Rroxscaffold_1G00016130

F-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0002544
Physical Location & Seq
Forward (+)
20102262 .. 20105427
3166 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016130.1

Sequence Viewer

Length: 873 bp
ATGGTTGAGTCCGAAGAGAAAAACGTTGCGTCACTTGCTCCTCGAAAGACCACGACAGTCCGCACGAGAATGCGATCCGTTGAGAAGATACTCAATGAGGAGCAGAAAGCTCTGTTAGAATCTCTAGAGCAAAAGGAAGACCCAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAAGAAAGATCTTGAGAAAGAACTTGAGAAGAGTGAGACTCAAAATAAAGAGCTTCACTTTATAGTCTTAGACCAGCATACAGCCTTGTCAGGCTATGAAGATCAAATCAAGAATCTAAACAAAGAACTTGATCAGGTTGGCTCTCATGAGTCAAGGAGTGAAATTATGACCAAAGAGCGTGATGGTTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCGTAGAGAAGTTGAATACCATTGGAGCAGAGCTCAAGGAGGCGCAAAAAGACTTGGAAATGAGCAAGAATGTCTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTACTAAGGCAAAAAAGGCGTGGGAGGCTGAGAGGATGGCACTGAGAACTTTAAAGGAGCGAGACTCGGCCTTGAAGGAGGTCCAAAAAGATTTGTCCAAGTCCCAGGTTGAGTTGGAATCAGGAAAGAAGAACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGATTCGCAAGGACTTGTCCAAGTCCCGAGCTAAGTTGGAATTAGGCAAGAAGGTGTGGGAGGCTGAGAAGATGGAACTAACTAAGAAGCTTAACAAGTTTGGAACAGGAAACCCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGAAGCACATTAAAGAAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

290

Amino Acids

33.49

Weight (kDa)

7.02

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 61
AclI AACGTT 1 cut(s) 24
AclWI GGATC 2 cut(s) 69, 838
AcoI YGGCCR 1 cut(s) 837
AfaI GTAC 1 cut(s) 374
AgsI TTSAA 3 cut(s) 388, 418, 586
AjnI CCWGG 1 cut(s) 615
Alw21I GWGCWC 1 cut(s) 438
Alw26I GTCTC 3 cut(s) 203, 390, 567
AlwI GGATC 2 cut(s) 69, 838
Ama87I CYCGRG 1 cut(s) 720
AoxI GGCC 2 cut(s) 579, 837
ApeKI GCWGC 1 cut(s) 391
AspLEI GCGC 1 cut(s) 448
AspS9I GGNCC 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 839
BanII GRGCYC 1 cut(s) 438
BauI CACGAG 2 cut(s) 64, 848
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 438
BbvI GCAGC 1 cut(s) 403
BccI CCATC 3 cut(s) 350, 541, 760
BceAI ACGGC 1 cut(s) 389
BciT130I CCWGG 1 cut(s) 617
BclI TGATCA 1 cut(s) 304
BcoDI GTCTC 3 cut(s) 203, 390, 567
BfaI CTAG 1 cut(s) 125
BglII AGATCT 1 cut(s) 181
BisI GCNGC 1 cut(s) 392
BlsI GCNGC 1 cut(s) 393
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 592
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 1 cut(s) 592
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 1 cut(s) 472
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 6 cut(s) 196, 228, 420, 452, 560, 592
BpuEI CTTGAG 4 cut(s) 176, 206, 218, 422
BsaJI CCNNGG 1 cut(s) 615
BseBI CCWGG 1 cut(s) 617
BseDI CCNNGG 1 cut(s) 615
BseGI GGATG 2 cut(s) 487, 552
BseMII CTCAG 7 cut(s) 414, 477, 495, 531, 545, 750, 829
BseRI GAGGAG 3 cut(s) 30, 113, 836
BseXI GCAGC 1 cut(s) 403
BshFI GGCC 2 cut(s) 581, 839
BsiHKAI GWGCWC 1 cut(s) 438
BsiHKCI CYCGRG 1 cut(s) 720
BslFI GGGAC 2 cut(s) 598, 703
BsmAI GTCTC 3 cut(s) 203, 390, 567
BsmFI GGGAC 2 cut(s) 598, 703
BsmI GAATGC 1 cut(s) 75
BsnI GGCC 2 cut(s) 581, 839
BsoBI CYCGRG 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 438
Bsp143I GATC 6 cut(s) 74, 181, 274, 304, 811, 843
BspACI CCGC 1 cut(s) 61
BspANI GGCC 2 cut(s) 581, 839
BspCNI CTCAG 7 cut(s) 413, 478, 496, 532, 546, 751, 828
BspHI TCATGA 1 cut(s) 319
BspPI GGATC 2 cut(s) 69, 838
BssECI CCNNGG 1 cut(s) 615
BssMI GATC 6 cut(s) 74, 181, 274, 304, 811, 843
BssSI CACGAG 2 cut(s) 64, 848
Bst2BI CACGAG 2 cut(s) 64, 848
Bst2UI CCWGG 1 cut(s) 617
Bst4CI ACNGT 1 cut(s) 58
Bst6I CTCTTC 2 cut(s) 9, 197
BstF5I GGATG 2 cut(s) 487, 552
BstHHI GCGC 1 cut(s) 448
BstKTI GATC 6 cut(s) 77, 184, 277, 307, 814, 846
BstMAI GTCTC 3 cut(s) 203, 390, 567
BstMBI GATC 6 cut(s) 74, 181, 274, 304, 811, 843
BstMWI GCNNNNNNNGC 3 cut(s) 35, 527, 536
BstNI CCWGG 1 cut(s) 617
BstSCI CCNGG 1 cut(s) 615
BstV1I GCAGC 1 cut(s) 403
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 2 cut(s) 181, 843
BstYI RGATCY 2 cut(s) 181, 843
BsuRI GGCC 2 cut(s) 581, 839
BtsCI GGATG 2 cut(s) 487, 552
BtsIMutI CAGTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 319
CfoI GCGC 1 cut(s) 448
Cfr13I GGNCC 1 cut(s) 592
CseI GACGC 1 cut(s) 18
Csp6I GTAC 1 cut(s) 373
CviAII CATG 2 cut(s) 320, 658
CviQI GTAC 1 cut(s) 373
DpnI GATC 6 cut(s) 76, 183, 276, 306, 813, 845
DpnII GATC 6 cut(s) 74, 181, 274, 304, 811, 843
DraI TTTAAA 1 cut(s) 564
EaeI YGGCCR 1 cut(s) 837
Eam1104I CTCTTC 2 cut(s) 9, 197
EarI CTCTTC 2 cut(s) 9, 197
Ecl136II GAGCTC 1 cut(s) 436
Eco24I GRGCYC 1 cut(s) 438
Eco47I GGWCC 1 cut(s) 592
Eco53kI GAGCTC 1 cut(s) 436
Eco88I CYCGRG 1 cut(s) 720
EcoICRI GAGCTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 615
EcoT38I GRGCYC 1 cut(s) 438
FaeI CATG 2 cut(s) 323, 661
FaiI YATR 7 cut(s) 236, 252, 270, 321, 341, 659, 831
FaqI GGGAC 2 cut(s) 598, 703
FatI CATG 2 cut(s) 319, 657
FbaI TGATCA 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 392
FokI GGATG 2 cut(s) 494, 559
FriOI GRGCYC 1 cut(s) 438
Fsp4HI GCNGC 1 cut(s) 392
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 447
GluI GCNGC 1 cut(s) 392
HaeIII GGCC 2 cut(s) 581, 839
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 448
Hin1II CATG 2 cut(s) 323, 661
Hin6I GCGC 1 cut(s) 446
HinP1I GCGC 1 cut(s) 446
HindIII AAGCTT 1 cut(s) 782
HinfI GANTC 9 cut(s) 8, 119, 211, 286, 323, 398, 575, 629, 697
Hpy188I TCNGA 2 cut(s) 13, 818
Hpy188III TCNNGA 6 cut(s) 125, 185, 283, 320, 633, 720
HpyAV CCTTC 2 cut(s) 580, 739
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4IV ACGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 527, 536
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 2 cut(s) 323, 661
HspAI GCGC 1 cut(s) 446
Ksp22I TGATCA 1 cut(s) 304
Kzo9I GATC 6 cut(s) 74, 181, 274, 304, 811, 843
LmnI GCTCC 5 cut(s) 43, 100, 428, 568, 680
LpnPI CCDG 9 cut(s) 249, 260, 293, 463, 602, 618, 629, 786, 822
Lsp1109I GCAGC 1 cut(s) 403
LweI GCATC 1 cut(s) 472
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 1 cut(s) 30
MalI GATC 6 cut(s) 76, 183, 276, 306, 813, 845
MboI GATC 6 cut(s) 74, 181, 274, 304, 811, 843
MboII GAAGA 7 cut(s) 26, 97, 149, 214, 284, 652, 775
MflI RGATCY 2 cut(s) 181, 843
MhlI GDGCHC 1 cut(s) 438
MlsI TGGCCA 1 cut(s) 839
MluCI AATT 3 cut(s) 336, 734, 868
MluNI TGGCCA 1 cut(s) 839
MlyI GAGTC 5 cut(s) 17, 205, 332, 392, 569
MmeI TCCRAC 2 cut(s) 606, 711
Mox20I TGGCCA 1 cut(s) 839
MscI TGGCCA 1 cut(s) 839
MseI TTAA 3 cut(s) 563, 786, 861
MslI CAYNNNNRTG 2 cut(s) 68, 656
Msp20I TGGCCA 1 cut(s) 839
MspR9I CCNGG 1 cut(s) 617
Mva1269I GAATGC 1 cut(s) 75
MvaI CCWGG 1 cut(s) 617
MwoI GCNNNNNNNGC 3 cut(s) 35, 527, 536
NdeII GATC 6 cut(s) 74, 181, 274, 304, 811, 843
NlaIII CATG 2 cut(s) 323, 661
NmeAIII GCCGAG 1 cut(s) 557
NmuCI GTSAC 1 cut(s) 30
PagI TCATGA 1 cut(s) 319
PctI GAATGC 1 cut(s) 75
PfeI GAWTC 4 cut(s) 119, 286, 629, 697
PkrI GCNGC 1 cut(s) 393
PleI GAGTC 5 cut(s) 16, 205, 331, 392, 569
PpsI GAGTC 5 cut(s) 16, 205, 331, 392, 569
Psp124BI GAGCTC 1 cut(s) 438
Psp1406I AACGTT 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 615
PspGI CCWGG 1 cut(s) 615
PspPI GGNCC 1 cut(s) 592
PsuI RGATCY 2 cut(s) 181, 843
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 2 cut(s) 68, 656
SacI GAGCTC 1 cut(s) 438
SaqAI TTAA 3 cut(s) 563, 786, 861
SatI GCNGC 1 cut(s) 392
Sau3AI GATC 6 cut(s) 74, 181, 274, 304, 811, 843
Sau96I GGNCC 1 cut(s) 592
SchI GAGTC 5 cut(s) 17, 205, 332, 392, 569
ScrFI CCNGG 1 cut(s) 617
SduI GDGCHC 1 cut(s) 438
SfaNI GCATC 1 cut(s) 472
SinI GGWCC 1 cut(s) 592
SmiMI CAYNNNNRTG 2 cut(s) 68, 656
SmlI CTYRAG 4 cut(s) 155, 185, 197, 437
SmoI CTYRAG 4 cut(s) 155, 185, 197, 437
Sse9I AATT 3 cut(s) 336, 734, 868
SsiI CCGC 1 cut(s) 61
SspMI CTAG 1 cut(s) 125
SstI GAGCTC 1 cut(s) 438
StyD4I CCNGG 1 cut(s) 615
TaaI ACNGT 1 cut(s) 58
TaiI ACGT 1 cut(s) 27
TaqI TCGA 1 cut(s) 43
TasI AATT 3 cut(s) 336, 734, 868
TatI WGTACW 1 cut(s) 372
TfiI GAWTC 4 cut(s) 119, 286, 629, 697
Tru1I TTAA 3 cut(s) 563, 786, 861
Tru9I TTAA 3 cut(s) 563, 786, 861
TscAI CASTG 1 cut(s) 558
TseFI GTSAC 1 cut(s) 30
TseI GCWGC 1 cut(s) 391
Tsp45I GTSAC 1 cut(s) 30
TspDTI ATGAA 2 cut(s) 285, 674
TspGWI ACGGA 1 cut(s) 67
TspRI CASTG 1 cut(s) 558
VpaK11BI GGWCC 1 cut(s) 592
XbaI TCTAGA 1 cut(s) 124
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.