Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000956.1

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

23950 .. 25943

Gene Structure 1994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000956.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgaatgaggggaaccctggtatcttagacaatgttaatccagctggcacgtgcaattttcatcaagttttactgaacctacgtagccaggttgagaagataatcaatgaggggcagagagctctgttagaatctccagagcaaaaggaagacctaagaaaacagcttgagaaaagtgaagctcaaaacaaagatcttgagaaagaacttgagaagagtgaggctcaaaataaagagcttcacaatatagtcttagaccagcatacagccttgtcaagctatgaagatcaaatcaagaatctaaagaaagaacttgatcaggctggctctcatgagtcgaggagtgcaattaagaccaaagagcgtgatggcttgattagcaagtacaaccaggcattgaagcagcgagactcagccttagagaagttgaataccattggagcagagctaaaggacttggaattgagcaagaatgtctgggatgctgagaggatagctttggctgagaggcttactaaggcgaaaaaggcgtgggaggctgagaggatggcactgacaagtacaattttgacgcaccaggactccacttggaaatacaaccaagctttaaaggagcgagactcagccttgaaggaggtccaaaaagatttgtccaagtcccaggttgagttggaatcaggaaagaaggacctcaacacagccatgaacgagctgaacattttgggagcagagctaaatgaggttcgaaaggacttgtccgagtcccgggctaagttgcaattaggcaagaaggtgtgggaggctgagaagatggaactgactaagaagcttaacaagtttggaacaggaaactctgatctcagagaggagttgtatgacttggccaagatccacgagaagcacattaaagaaaatgagaatgcgtattgtacagggtacctgactgggtggttcagggagcctcatgaatatatttccctgcgaggctatgaggccaaggaagttactcttccggttcacaatcctctggaggccacatcttcacattctcattctcgtgccacaattagacgtttcggaagtgctggtccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

364

Amino Acids

41.48

Weight (kDa)

6.31

Isoelectric Point (pI)

35.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	936
AccB1I	GGYRCC	1 cut(s)	936
AclWI	GGATC	1 cut(s)	883
AcoI	YGGCCR	1 cut(s)	882
AcvI	CACGTG	1 cut(s)	51
AfaI	GTAC	4 cut(s)	386, 562, 931, 938
AfiI	CCNNNNNNNGG	1 cut(s)	765
AgsI	TTSAA	3 cut(s)	400, 430, 631
AjnI	CCWGG	5 cut(s)	16, 87, 390, 576, 660
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	2 cut(s)	402, 612
AlwI	GGATC	1 cut(s)	883
Ama87I	CYCGRG	1 cut(s)	765
AoxI	GGCC	3 cut(s)	882, 993, 1032
ApeKI	GCWGC	1 cut(s)	403
Asp718I	GGTACC	1 cut(s)	936
AspS9I	GGNCC	3 cut(s)	637, 688, 1088
AsuC2I	CCSGG	2 cut(s)	766, 767
AsuII	TTCGAA	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	765
AvaII	GGWCC	3 cut(s)	637, 688, 1088
BaeI	ACNNNNGTAYC	1 cut(s)	37
BalI	TGGCCA	1 cut(s)	884
BanI	GGYRCC	1 cut(s)	936
BanII	GRGCYC	1 cut(s)	124
BauI	CACGAG	2 cut(s)	893, 1056
BbrPI	CACGTG	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	156
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	1 cut(s)	415
BccI	CCATC	3 cut(s)	362, 541, 805
BciT130I	CCWGG	5 cut(s)	18, 89, 392, 578, 662
BclI	TGATCA	1 cut(s)	316
BcnI	CCSGG	2 cut(s)	766, 767
BcoDI	GTCTC	2 cut(s)	402, 612
BglII	AGATCT	1 cut(s)	193
BisI	GCNGC	1 cut(s)	404
BlsI	GCNGC	1 cut(s)	405
Bme1390I	CCNGG	7 cut(s)	18, 89, 392, 578, 662, 766, 767
Bme18I	GGWCC	3 cut(s)	637, 688, 1088
BmeT110I	CYCGRG	1 cut(s)	765
BmgT120I	GGNCC	3 cut(s)	637, 688, 1088
BmiI	GGNNCC	3 cut(s)	14, 938, 960
BmrFI	CCNGG	7 cut(s)	18, 89, 392, 578, 662, 766, 767
BmrI	ACTGGG	1 cut(s)	954
BmsI	GCATC	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	954
BpiI	GAAGAC	1 cut(s)	156
BplI	GAGNNNNNCTC	4 cut(s)	208, 240, 605, 637
BpmI	CTGGAG	2 cut(s)	120, 1049
Bpu14I	TTCGAA	1 cut(s)	745
BpuEI	CTTGAG	3 cut(s)	188, 218, 230
BpuMI	CCSGG	2 cut(s)	766, 767
BsaAI	YACGTR	2 cut(s)	51, 83
BsaJI	CCNNGG	4 cut(s)	16, 660, 765, 996
BsaWI	WCCGGW	1 cut(s)	1012
BsaXI	ACNNNNNCTCC	2 cut(s)	566, 596
Bsc4I	CCNNNNNNNGG	1 cut(s)	765
Bse1I	ACTGG	1 cut(s)	949
BseBI	CCWGG	5 cut(s)	18, 89, 392, 578, 662
BseDI	CCNNGG	4 cut(s)	16, 660, 765, 996
BseGI	GGATG	2 cut(s)	487, 552
BseLI	CCNNNNNNNGG	1 cut(s)	765
BseMII	CTCAG	7 cut(s)	426, 477, 495, 531, 636, 795, 874
BseNI	ACTGG	1 cut(s)	949
BseRI	GAGGAG	2 cut(s)	355, 881
BseXI	GCAGC	1 cut(s)	415
BshFI	GGCC	3 cut(s)	884, 995, 1034
BshNI	GGYRCC	1 cut(s)	936
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	765
BsiSI	CCGG	2 cut(s)	766, 1013
BslFI	GGGAC	2 cut(s)	643, 748
BslI	CCNNNNNNNGG	1 cut(s)	765
BsmAI	GTCTC	2 cut(s)	402, 612
BsmFI	GGGAC	2 cut(s)	643, 748
BsmI	GAATGC	1 cut(s)	925
BsnI	GGCC	3 cut(s)	884, 995, 1034
BsoBI	CYCGRG	1 cut(s)	765
Bsp119I	TTCGAA	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp1407I	TGTACA	1 cut(s)	929
Bsp143I	GATC	5 cut(s)	193, 286, 316, 856, 888
BspANI	GGCC	3 cut(s)	884, 995, 1034
BspCNI	CTCAG	7 cut(s)	425, 478, 496, 532, 635, 796, 873
BspHI	TCATGA	2 cut(s)	331, 964
BspLI	GGNNCC	3 cut(s)	14, 938, 960
BspPI	GGATC	1 cut(s)	883
BspT104I	TTCGAA	1 cut(s)	745
BspT107I	GGYRCC	1 cut(s)	936
BsrGI	TGTACA	1 cut(s)	929
BsrI	ACTGG	1 cut(s)	949
BssECI	CCNNGG	4 cut(s)	16, 660, 765, 996
BssMI	GATC	5 cut(s)	193, 286, 316, 856, 888
BssSI	CACGAG	2 cut(s)	893, 1056
BssT1I	CCWWGG	1 cut(s)	996
Bst2BI	CACGAG	2 cut(s)	893, 1056
Bst2UI	CCWGG	5 cut(s)	18, 89, 392, 578, 662
Bst6I	CTCTTC	2 cut(s)	209, 1014
BstAUI	TGTACA	1 cut(s)	929
BstBAI	YACGTR	2 cut(s)	51, 83
BstBI	TTCGAA	1 cut(s)	745
BstC8I	GCNNGC	2 cut(s)	46, 325
BstF5I	GGATG	2 cut(s)	487, 552
BstKTI	GATC	5 cut(s)	196, 289, 319, 859, 891
BstMAI	GTCTC	2 cut(s)	402, 612
BstMBI	GATC	5 cut(s)	193, 286, 316, 856, 888
BstMWI	GCNNNNNNNGC	3 cut(s)	378, 527, 536
BstNI	CCWGG	5 cut(s)	18, 89, 392, 578, 662
BstSCI	CCNGG	7 cut(s)	16, 87, 390, 576, 660, 764, 765
BstSNI	TACGTA	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	415
BstV2I	GAAGAC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	193, 888
BstYI	RGATCY	2 cut(s)	193, 888
BsuRI	GGCC	3 cut(s)	884, 995, 1034
BtsCI	GGATG	2 cut(s)	487, 552
BtsIMutI	CAGTG	1 cut(s)	551
Cac8I	GCNNGC	2 cut(s)	46, 325
CciI	TCATGA	2 cut(s)	331, 964
Cfr13I	GGNCC	3 cut(s)	637, 688, 1088
Cfr9I	CCCGGG	1 cut(s)	765
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	4 cut(s)	385, 561, 930, 937
CviAII	CATG	3 cut(s)	332, 703, 965
CviQI	GTAC	4 cut(s)	385, 561, 930, 937
DpnI	GATC	5 cut(s)	195, 288, 318, 858, 890
DpnII	GATC	5 cut(s)	193, 286, 316, 856, 888
DraI	TTTAAA	1 cut(s)	609
EaeI	YGGCCR	1 cut(s)	882
Eam1104I	CTCTTC	2 cut(s)	209, 1014
EarI	CTCTTC	2 cut(s)	209, 1014
Ecl136II	GAGCTC	1 cut(s)	122
Eco105I	TACGTA	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	996
Eco24I	GRGCYC	1 cut(s)	124
Eco47I	GGWCC	3 cut(s)	637, 688, 1088
Eco53kI	GAGCTC	1 cut(s)	122
Eco72I	CACGTG	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	765
EcoICRI	GAGCTC	1 cut(s)	122
EcoO109I	RGGNCCY	1 cut(s)	688
EcoRII	CCWGG	5 cut(s)	16, 87, 390, 576, 660
EcoT14I	CCWWGG	1 cut(s)	996
EcoT38I	GRGCYC	1 cut(s)	124
ErhI	CCWWGG	1 cut(s)	996
FaeI	CATG	3 cut(s)	335, 706, 968
FalI	AAGNNNNNCTT	2 cut(s)	993, 1025
FaqI	GGGAC	2 cut(s)	643, 748
FatI	CATG	3 cut(s)	331, 702, 964
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	404
FokI	GGATG	2 cut(s)	494, 559
FriOI	GRGCYC	1 cut(s)	124
Fsp4HI	GCNGC	1 cut(s)	404
GluI	GCNGC	1 cut(s)	404
GsuI	CTGGAG	2 cut(s)	120, 1049
HaeIII	GGCC	3 cut(s)	884, 995, 1034
HapII	CCGG	2 cut(s)	766, 1013
HgaI	GACGC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	335, 706, 968
HindIII	AAGCTT	2 cut(s)	603, 827
HinfI	GANTC	8 cut(s)	131, 298, 335, 410, 581, 620, 674, 761
HpaII	CCGG	2 cut(s)	766, 1013
Hpy166II	GTNNAC	1 cut(s)	1018
Hpy188I	TCNGA	4 cut(s)	760, 856, 863, 1079
Hpy188III	TCNNGA	7 cut(s)	137, 197, 295, 332, 678, 965, 1028
Hpy8I	GTNNAC	1 cut(s)	1018
HpyAV	CCTTC	3 cut(s)	625, 679, 784
HpyCH4IV	ACGT	3 cut(s)	50, 82, 1072
HpyCH4V	TGCA	3 cut(s)	54, 347, 778
HpyF10VI	GCNNNNNNNGC	3 cut(s)	378, 527, 536
HpySE526I	ACGT	3 cut(s)	50, 82, 1072
Hsp92II	CATG	3 cut(s)	335, 706, 968
KpnI	GGTACC	1 cut(s)	940
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	193, 286, 316, 856, 888
LmnI	GCTCC	4 cut(s)	440, 613, 725, 958
Lsp1109I	GCAGC	1 cut(s)	415
LweI	GCATC	1 cut(s)	472
MaeII	ACGT	3 cut(s)	50, 82, 1072
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	5 cut(s)	195, 288, 318, 858, 890
MboI	GATC	5 cut(s)	193, 286, 316, 856, 888
MboII	GAAGA	7 cut(s)	109, 161, 226, 296, 820, 1001, 1032
MflI	RGATCY	2 cut(s)	193, 888
MhlI	GDGCHC	1 cut(s)	124
MlsI	TGGCCA	1 cut(s)	884
MluCI	AATT	6 cut(s)	55, 348, 461, 564, 779, 1065
MluNI	TGGCCA	1 cut(s)	884
MlyI	GAGTC	5 cut(s)	344, 404, 575, 614, 770
MmeI	TCCRAC	1 cut(s)	651
Mox20I	TGGCCA	1 cut(s)	884
MscI	TGGCCA	1 cut(s)	884
MseI	TTAA	5 cut(s)	36, 351, 608, 831, 906
MslI	CAYNNNNRTG	2 cut(s)	701, 1056
Msp20I	TGGCCA	1 cut(s)	884
MspA1I	CMGCKG	1 cut(s)	44
MspI	CCGG	2 cut(s)	766, 1013
MspR9I	CCNGG	7 cut(s)	18, 89, 392, 578, 662, 766, 767
Mva1269I	GAATGC	1 cut(s)	925
MvaI	CCWGG	5 cut(s)	18, 89, 392, 578, 662
MwoI	GCNNNNNNNGC	3 cut(s)	378, 527, 536
NciI	CCSGG	2 cut(s)	766, 767
NdeII	GATC	5 cut(s)	193, 286, 316, 856, 888
NlaIII	CATG	3 cut(s)	335, 706, 968
NlaIV	GGNNCC	3 cut(s)	14, 938, 960
NspV	TTCGAA	1 cut(s)	745
PagI	TCATGA	2 cut(s)	331, 964
PctI	GAATGC	1 cut(s)	925
PfeI	GAWTC	3 cut(s)	131, 298, 674
PkrI	GCNGC	1 cut(s)	405
PleI	GAGTC	5 cut(s)	343, 404, 575, 614, 769
PmaCI	CACGTG	1 cut(s)	51
PmlI	CACGTG	1 cut(s)	51
PpsI	GAGTC	5 cut(s)	343, 404, 575, 614, 769
Ppu21I	YACGTR	2 cut(s)	51, 83
PpuMI	RGGWCCY	1 cut(s)	688
Psp124BI	GAGCTC	1 cut(s)	124
Psp5II	RGGWCCY	1 cut(s)	688
Psp6I	CCWGG	5 cut(s)	16, 87, 390, 576, 660
PspCI	CACGTG	1 cut(s)	51
PspGI	CCWGG	5 cut(s)	16, 87, 390, 576, 660
PspN4I	GGNNCC	3 cut(s)	14, 938, 960
PspPI	GGNCC	3 cut(s)	637, 688, 1088
PspPPI	RGGWCCY	1 cut(s)	688
PsuI	RGATCY	2 cut(s)	193, 888
PvuII	CAGCTG	1 cut(s)	44
RsaI	GTAC	4 cut(s)	386, 562, 931, 938
RsaNI	GTAC	4 cut(s)	385, 561, 930, 937
RseI	CAYNNNNRTG	2 cut(s)	701, 1056
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	5 cut(s)	36, 351, 608, 831, 906
SatI	GCNGC	1 cut(s)	404
Sau3AI	GATC	5 cut(s)	193, 286, 316, 856, 888
Sau96I	GGNCC	3 cut(s)	637, 688, 1088
SchI	GAGTC	5 cut(s)	344, 404, 575, 614, 770
ScrFI	CCNGG	7 cut(s)	18, 89, 392, 578, 662, 766, 767
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	1 cut(s)	472
SfuI	TTCGAA	1 cut(s)	745
SinI	GGWCC	3 cut(s)	637, 688, 1088
SmaI	CCCGGG	1 cut(s)	767
SmiMI	CAYNNNNRTG	2 cut(s)	701, 1056
SmlI	CTYRAG	3 cut(s)	167, 197, 209
SmoI	CTYRAG	3 cut(s)	167, 197, 209
SnaBI	TACGTA	1 cut(s)	83
Sse9I	AATT	6 cut(s)	55, 348, 461, 564, 779, 1065
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	7 cut(s)	16, 87, 390, 576, 660, 764, 765
StyI	CCWWGG	1 cut(s)	996
TaiI	ACGT	3 cut(s)	53, 85, 1075
TaqI	TCGA	2 cut(s)	338, 745
TasI	AATT	6 cut(s)	55, 348, 461, 564, 779, 1065
TatI	WGTACW	3 cut(s)	384, 560, 929
TfiI	GAWTC	3 cut(s)	131, 298, 674
Tru1I	TTAA	5 cut(s)	36, 351, 608, 831, 906
Tru9I	TTAA	5 cut(s)	36, 351, 608, 831, 906
TscAI	CASTG	1 cut(s)	558
TseI	GCWGC	1 cut(s)	403
TspDTI	ATGAA	5 cut(s)	17, 50, 297, 719, 981
TspMI	CCCGGG	1 cut(s)	765
TspRI	CASTG	1 cut(s)	558
VpaK11BI	GGWCC	3 cut(s)	637, 688, 1088
XmaI	CCCGGG	1 cut(s)	765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.