Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

64749769 .. 64751000

Gene Structure 1232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG465300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGTTCCAGGAGAACTTCAATTTGGGAAATTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGACCTGAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGAAATGTGAGGCTCAAAATAAAGAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAATCTATGAAGATCAAATCAAGAATCTCAAGAAAGAACTGGATCAGGTTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGCAATGACTTGATTAGCAAGTACAATTACAACCAAGTATTGAAGCAGCGAGACTCAACCTTAGGAAAGTTGAACACCATTGGAGCAGAGCTACAGGAAGCACAAAATGACTTGGAATTAGGCAAGAAGTTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTTCTAATGCAAAGCAGTTATGGGAGGCTGAGAAGATAGCACTGATTGATAATATTTTGACAAAAGAGCGTCAGGACTCCACTTTCAAATACAACCAAGCTTTGAAGGAGCGAGACACAGCCTTGGGTGAGCTGAAAAACCTGGGAGTAAAGCTGAAGGGGGTCCTAAAAGACTTATACAAGTCCAATGATGATTTGGAATCAGGAAAGAAGGAGCTCGACATGGCCTTGAACGAACTGAAGATCTTGGGAGCACAGCTAAATGGGGTCCGAAAGGACTTGTCCAAGTCCCGGTCTAAGTTGGAATTTGGTAAGAAGGTGTGGGAGACTGAGAAAATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGAGATAAAGGAGATCAGAGAGGAGTTGTCTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

302

Amino Acids

34.97

Weight (kDa)

7.66

Isoelectric Point (pI)

33.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	297
AcsI	RAATTY	2 cut(s)	29, 806
AcuI	CTGAAG	2 cut(s)	677, 761
AfaI	GTAC	2 cut(s)	75, 359
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	6 cut(s)	20, 379, 409, 589, 607, 733
AjnI	CCWGG	3 cut(s)	7, 60, 642
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
Alw21I	GWGCWC	2 cut(s)	720, 757
Alw26I	GTCTC	3 cut(s)	381, 609, 821
AlwI	GGATC	1 cut(s)	297
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	2 cut(s)	85, 382
ApoI	RAATTY	2 cut(s)	29, 806
AspLEI	GCGC	1 cut(s)	339
AspS9I	GGNCC	3 cut(s)	49, 664, 769
AsuC2I	CCSGG	1 cut(s)	793
AsuHPI	GGTGA	1 cut(s)	641
AvaII	GGWCC	3 cut(s)	49, 664, 769
AxyI	CCTNAGG	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	720
Bbv12I	GWGCWC	2 cut(s)	720, 757
BbvI	GCAGC	2 cut(s)	97, 394
BciT130I	CCWGG	3 cut(s)	9, 62, 644
BcnI	CCSGG	1 cut(s)	793
BcoDI	GTCTC	3 cut(s)	381, 609, 821
BfaI	CTAG	1 cut(s)	907
BfmI	CTRYAG	1 cut(s)	428
BglII	AGATCT	2 cut(s)	166, 744
BisI	GCNGC	2 cut(s)	86, 383
BlsI	GCNGC	2 cut(s)	87, 384
Bme1390I	CCNGG	4 cut(s)	9, 62, 644, 793
Bme18I	GGWCC	3 cut(s)	49, 664, 769
BmgT120I	GGNCC	3 cut(s)	49, 664, 769
BmiI	GGNNCC	3 cut(s)	6, 665, 770
BmrFI	CCNGG	4 cut(s)	9, 62, 644, 793
BmsI	GCATC	1 cut(s)	463
BpuEI	CTTGAG	5 cut(s)	93, 161, 191, 203, 260
BpuMI	CCSGG	1 cut(s)	793
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	2 cut(s)	624, 643
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	2 cut(s)	51, 291
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	9, 62, 644
BseDI	CCNNGG	2 cut(s)	624, 643
BseGI	GGATG	1 cut(s)	478
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	5 cut(s)	119, 468, 486, 522, 822
BseNI	ACTGG	2 cut(s)	51, 291
BseRI	GAGGAG	2 cut(s)	328, 908
BseXI	GCAGC	2 cut(s)	97, 394
BshFI	GGCC	1 cut(s)	728
BsiHKAI	GWGCWC	2 cut(s)	720, 757
BsiSI	CCGG	1 cut(s)	793
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	3 cut(s)	381, 609, 821
BsmFI	GGGAC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	728
Bsp1286I	GDGCHC	2 cut(s)	720, 757
Bsp143I	GATC	5 cut(s)	166, 259, 289, 744, 885
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	5 cut(s)	120, 469, 487, 523, 823
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	3 cut(s)	6, 665, 770
BspPI	GGATC	1 cut(s)	297
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	2 cut(s)	51, 291
BssECI	CCNNGG	2 cut(s)	624, 643
BssMI	GATC	5 cut(s)	166, 259, 289, 744, 885
BssT1I	CCWWGG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	9, 62, 644
BstBAI	YACGTR	1 cut(s)	56
BstDEI	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
BstF5I	GGATG	1 cut(s)	478
BstHHI	GCGC	1 cut(s)	339
BstKTI	GATC	5 cut(s)	169, 262, 292, 747, 888
BstMAI	GTCTC	3 cut(s)	381, 609, 821
BstMBI	GATC	5 cut(s)	166, 259, 289, 744, 885
BstNI	CCWGG	3 cut(s)	9, 62, 644
BstSCI	CCNGG	4 cut(s)	7, 60, 642, 791
BstSFI	CTRYAG	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	56
BstV1I	GCAGC	2 cut(s)	97, 394
BstX2I	RGATCY	2 cut(s)	166, 744
BstYI	RGATCY	2 cut(s)	166, 744
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	1 cut(s)	728
BtsCI	GGATG	1 cut(s)	478
BtsIMutI	CAGTG	1 cut(s)	542
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	1 cut(s)	339
Cfr13I	GGNCC	3 cut(s)	49, 664, 769
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	2 cut(s)	74, 358
CviAII	CATG	2 cut(s)	305, 724
CviQI	GTAC	2 cut(s)	74, 358
DdeI	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
DpnI	GATC	5 cut(s)	168, 261, 291, 746, 887
DpnII	GATC	5 cut(s)	166, 259, 289, 744, 885
Ecl136II	GAGCTC	1 cut(s)	718
Eco105I	TACGTA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	624
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	3 cut(s)	49, 664, 769
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	677, 761
Eco81I	CCTNAGG	1 cut(s)	397
EcoICRI	GAGCTC	1 cut(s)	718
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	3 cut(s)	7, 60, 642
EcoT14I	CCWWGG	1 cut(s)	624
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	624
FaeI	CATG	2 cut(s)	308, 727
FaiI	YATR	8 cut(s)	221, 237, 255, 306, 326, 523, 679, 725
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	2 cut(s)	304, 723
Fnu4HI	GCNGC	2 cut(s)	86, 383
FokI	GGATG	1 cut(s)	485
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	2 cut(s)	86, 383
FspBI	CTAG	1 cut(s)	907
GlaI	GCGC	1 cut(s)	338
GluI	GCNGC	2 cut(s)	86, 383
HaeIII	GGCC	1 cut(s)	728
HapII	CCGG	1 cut(s)	793
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	1 cut(s)	339
Hin1II	CATG	2 cut(s)	308, 727
Hin6I	GCGC	1 cut(s)	337
HinP1I	GCGC	1 cut(s)	337
HindIII	AAGCTT	2 cut(s)	600, 854
HinfI	GANTC	5 cut(s)	271, 308, 389, 578, 701
HpaII	CCGG	1 cut(s)	793
HphI	GGTGA	1 cut(s)	641
Hpy188I	TCNGA	3 cut(s)	773, 890, 904
Hpy188III	TCNNGA	7 cut(s)	110, 170, 268, 277, 305, 575, 705
HpyAV	CCTTC	5 cut(s)	64, 601, 652, 706, 811
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	1 cut(s)	512
HpyF3I	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	2 cut(s)	308, 727
HspAI	GCGC	1 cut(s)	337
Kzo9I	GATC	5 cut(s)	166, 259, 289, 744, 885
LmnI	GCTCC	4 cut(s)	419, 610, 715, 752
Lsp1109I	GCAGC	2 cut(s)	97, 394
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	907
MaeII	ACGT	1 cut(s)	55
MalI	GATC	5 cut(s)	168, 261, 291, 746, 887
MboI	GATC	5 cut(s)	166, 259, 289, 744, 885
MboII	GAAGA	3 cut(s)	269, 547, 754
MflI	RGATCY	2 cut(s)	166, 744
MhlI	GDGCHC	2 cut(s)	720, 757
MluCI	AATT	6 cut(s)	20, 29, 321, 361, 452, 806
MlyI	GAGTC	3 cut(s)	317, 383, 572
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	6 cut(s)	187, 306, 474, 492, 520, 886
MseI	TTAA	3 cut(s)	101, 213, 858
MspI	CCGG	1 cut(s)	793
MspR9I	CCNGG	4 cut(s)	9, 62, 644, 793
MvaI	CCWGG	3 cut(s)	9, 62, 644
NciI	CCSGG	1 cut(s)	793
NdeII	GATC	5 cut(s)	166, 259, 289, 744, 885
NlaIII	CATG	2 cut(s)	308, 727
NlaIV	GGNNCC	3 cut(s)	6, 665, 770
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	271, 701
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	87, 384
PleI	GAGTC	3 cut(s)	316, 383, 572
PpsI	GAGTC	3 cut(s)	316, 383, 572
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	7, 60, 642
PspGI	CCWGG	3 cut(s)	7, 60, 642
PspN4I	GGNNCC	3 cut(s)	6, 665, 770
PspPI	GGNCC	3 cut(s)	49, 664, 769
PspPPI	RGGWCCY	1 cut(s)	664
PsuI	RGATCY	2 cut(s)	166, 744
RsaI	GTAC	2 cut(s)	75, 359
RsaNI	GTAC	2 cut(s)	74, 358
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	3 cut(s)	101, 213, 858
SatI	GCNGC	2 cut(s)	86, 383
Sau3AI	GATC	5 cut(s)	166, 259, 289, 744, 885
Sau96I	GGNCC	3 cut(s)	49, 664, 769
SchI	GAGTC	3 cut(s)	317, 383, 572
ScrFI	CCNGG	4 cut(s)	9, 62, 644, 793
SduI	GDGCHC	2 cut(s)	720, 757
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	3 cut(s)	49, 664, 769
SmlI	CTYRAG	5 cut(s)	108, 140, 170, 182, 275
SmoI	CTYRAG	5 cut(s)	108, 140, 170, 182, 275
SnaBI	TACGTA	1 cut(s)	56
Sse9I	AATT	6 cut(s)	20, 29, 321, 361, 452, 806
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	907
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	4 cut(s)	7, 60, 642, 791
StyI	CCWWGG	1 cut(s)	624
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	3 cut(s)	157, 311, 720
TasI	AATT	6 cut(s)	20, 29, 321, 361, 452, 806
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	271, 701
Tru1I	TTAA	3 cut(s)	101, 213, 858
Tru9I	TTAA	3 cut(s)	101, 213, 858
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	2 cut(s)	85, 382
TspDTI	ATGAA	2 cut(s)	23, 270
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	3 cut(s)	49, 664, 769
XapI	RAATTY	2 cut(s)	29, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XspI	CTAG	1 cut(s)	907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.