Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

70829404 .. 70830848

Gene Structure 1445 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTTCCAGGAGAACTTCAATTTGGGAAAGTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGACCTGAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGAAATGTGAGGCTCAAAATAAAGAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAATCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTGGATCAGGTTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGCAATGACTTGATTAGCAAGTACAATTACAACCAAGTATTGAAGCAGCGAGACTCAACCTTAGGAAAGTTGAACACCATTGGAGCAGAGCTACAGGAAGCACAAAATGACTTGGAATTAGGCAAGAAGGTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGGCTTTCTAATGCAAAGCAGGCATGGGAGGCTGAGAAGATAGCACTGATTGATAATATTTTGACAAAAGAGCGTCAGGACTCCACTTTCAAATACAACCAAGCTTTGAAGGAGCGAGACACAGCCTTGGGTGAGCTGAAAAACCTGGGAGTAAAGCTGAAGGGGGTCCTAAAAGACTTATACAAGTCCAATGATGATTTGGAATCAGGAAAGAAGGAGCTCGACATGGCCTTGAACGAACTGAAGATCTTGGGAGCACAGCTAAATGGGGTCCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTTGGTAAGAAGGTGTGGGAGACTGAGAAAATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGAGATAAAGGAGATCAGAGAGGAGTTGTCTGACTTGGCCAAGATCCACGAGAAGCACATTCAAGAAAATGAGAAAGCATATTGCGCGGGGTACCTGACTGGATGGTTCAGGGAGCCCCATGAATATGTTTCCCTGCGAAGCCATGAGGCCAAGGAAGTTACTCTTCCGGTTCATAAACCTCTGGAGGCCACATCTTCACTTTCTCATTCTCGTGTCTTAATTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

373

Amino Acids

42.89

Weight (kDa)

8.46

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	963
AccB1I	GGYRCC	1 cut(s)	963
AccII	CGCG	1 cut(s)	959
AciI	CCGC	1 cut(s)	959
AclWI	GGATC	2 cut(s)	297, 910
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	1 cut(s)	806
AcuI	CTGAAG	2 cut(s)	677, 761
AfaI	GTAC	3 cut(s)	75, 359, 965
AfiI	CCNNNNNNNGG	1 cut(s)	792
AgsI	TTSAA	7 cut(s)	20, 379, 409, 589, 607, 733, 935
AjnI	CCWGG	3 cut(s)	7, 60, 642
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
Alw21I	GWGCWC	2 cut(s)	720, 757
Alw26I	GTCTC	3 cut(s)	381, 609, 821
AlwI	GGATC	2 cut(s)	297, 910
Ama87I	CYCGRG	1 cut(s)	792
AoxI	GGCC	4 cut(s)	726, 909, 1020, 1059
ApeKI	GCWGC	2 cut(s)	85, 382
ApoI	RAATTY	1 cut(s)	806
Asp718I	GGTACC	1 cut(s)	963
AspLEI	GCGC	2 cut(s)	339, 959
AspS9I	GGNCC	4 cut(s)	49, 664, 769, 1115
AsuC2I	CCSGG	2 cut(s)	793, 794
AsuHPI	GGTGA	1 cut(s)	641
AvaI	CYCGRG	1 cut(s)	792
AvaII	GGWCC	4 cut(s)	49, 664, 769, 1115
AxyI	CCTNAGG	1 cut(s)	397
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	963
BanII	GRGCYC	2 cut(s)	720, 990
BauI	CACGAG	2 cut(s)	920, 1083
Bbv12I	GWGCWC	2 cut(s)	720, 757
BbvI	GCAGC	2 cut(s)	97, 394
BccI	CCATC	1 cut(s)	969
BciT130I	CCWGG	3 cut(s)	9, 62, 644
BcnI	CCSGG	2 cut(s)	793, 794
BcoDI	GTCTC	3 cut(s)	381, 609, 821
BfmI	CTRYAG	1 cut(s)	428
BglII	AGATCT	2 cut(s)	166, 744
BisI	GCNGC	2 cut(s)	86, 383
BlsI	GCNGC	2 cut(s)	87, 384
Bme1390I	CCNGG	5 cut(s)	9, 62, 644, 793, 794
Bme18I	GGWCC	4 cut(s)	49, 664, 769, 1115
BmeT110I	CYCGRG	1 cut(s)	792
BmgT120I	GGNCC	4 cut(s)	49, 664, 769, 1115
BmiI	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
BmrFI	CCNGG	5 cut(s)	9, 62, 644, 793, 794
BmsI	GCATC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	1076
BpuEI	CTTGAG	4 cut(s)	93, 161, 191, 203
BpuMI	CCSGG	2 cut(s)	793, 794
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	4 cut(s)	624, 643, 792, 1023
BsaWI	WCCGGW	1 cut(s)	1039
Bsc4I	CCNNNNNNNGG	1 cut(s)	792
Bse1I	ACTGG	3 cut(s)	51, 291, 976
Bse21I	CCTNAGG	1 cut(s)	397
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	3 cut(s)	9, 62, 644
BseDI	CCNNGG	4 cut(s)	624, 643, 792, 1023
BseGI	GGATG	2 cut(s)	478, 980
BseLI	CCNNNNNNNGG	1 cut(s)	792
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	5 cut(s)	119, 468, 486, 522, 822
BseNI	ACTGG	3 cut(s)	51, 291, 976
BseRI	GAGGAG	2 cut(s)	328, 908
BseXI	GCAGC	2 cut(s)	97, 394
Bsh1236I	CGCG	1 cut(s)	959
BshFI	GGCC	4 cut(s)	728, 911, 1022, 1061
BshNI	GGYRCC	1 cut(s)	963
BsiHKAI	GWGCWC	2 cut(s)	720, 757
BsiHKCI	CYCGRG	1 cut(s)	792
BsiSI	CCGG	2 cut(s)	793, 1040
BslFI	GGGAC	1 cut(s)	775
BslI	CCNNNNNNNGG	1 cut(s)	792
BsmAI	GTCTC	3 cut(s)	381, 609, 821
BsmFI	GGGAC	1 cut(s)	775
BsnI	GGCC	4 cut(s)	728, 911, 1022, 1061
BsoBI	CYCGRG	1 cut(s)	792
Bsp1286I	GDGCHC	3 cut(s)	720, 757, 990
Bsp143I	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BspACI	CCGC	1 cut(s)	959
BspANI	GGCC	4 cut(s)	728, 911, 1022, 1061
BspCNI	CTCAG	5 cut(s)	120, 469, 487, 523, 823
BspFNI	CGCG	1 cut(s)	959
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
BspPI	GGATC	2 cut(s)	297, 910
BspT107I	GGYRCC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	3 cut(s)	51, 291, 976
BssECI	CCNNGG	4 cut(s)	624, 643, 792, 1023
BssMI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BssSI	CACGAG	2 cut(s)	920, 1083
BssT1I	CCWWGG	2 cut(s)	624, 1023
Bst2BI	CACGAG	2 cut(s)	920, 1083
Bst2UI	CCWGG	3 cut(s)	9, 62, 644
Bst6I	CTCTTC	1 cut(s)	1041
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
BstF5I	GGATG	2 cut(s)	478, 980
BstFNI	CGCG	1 cut(s)	959
BstHHI	GCGC	2 cut(s)	339, 959
BstKTI	GATC	6 cut(s)	169, 262, 292, 747, 888, 918
BstMAI	GTCTC	3 cut(s)	381, 609, 821
BstMBI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
BstNI	CCWGG	3 cut(s)	9, 62, 644
BstSCI	CCNGG	5 cut(s)	7, 60, 642, 791, 792
BstSFI	CTRYAG	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	56
BstUI	CGCG	1 cut(s)	959
BstV1I	GCAGC	2 cut(s)	97, 394
BstX2I	RGATCY	3 cut(s)	166, 744, 915
BstYI	RGATCY	3 cut(s)	166, 744, 915
Bsu36I	CCTNAGG	1 cut(s)	397
BsuRI	GGCC	4 cut(s)	728, 911, 1022, 1061
BtsCI	GGATG	2 cut(s)	478, 980
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	519
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	339, 959
Cfr13I	GGNCC	4 cut(s)	49, 664, 769, 1115
Cfr9I	CCCGGG	1 cut(s)	792
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	74, 358, 964
CviAII	CATG	5 cut(s)	305, 522, 724, 992, 1016
CviQI	GTAC	3 cut(s)	74, 358, 964
DdeI	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
DpnI	GATC	6 cut(s)	168, 261, 291, 746, 887, 917
DpnII	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Ecl136II	GAGCTC	1 cut(s)	718
Eco105I	TACGTA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	624, 1023
Eco24I	GRGCYC	2 cut(s)	720, 990
Eco47I	GGWCC	4 cut(s)	49, 664, 769, 1115
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	677, 761
Eco81I	CCTNAGG	1 cut(s)	397
Eco88I	CYCGRG	1 cut(s)	792
EcoICRI	GAGCTC	1 cut(s)	718
EcoO109I	RGGNCCY	1 cut(s)	664
EcoRII	CCWGG	3 cut(s)	7, 60, 642
EcoT14I	CCWWGG	2 cut(s)	624, 1023
EcoT38I	GRGCYC	2 cut(s)	720, 990
ErhI	CCWWGG	2 cut(s)	624, 1023
FaeI	CATG	5 cut(s)	308, 525, 727, 995, 1019
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	5 cut(s)	304, 521, 723, 991, 1015
FauI	CCCGC	1 cut(s)	952
Fnu4HI	GCNGC	2 cut(s)	86, 383
FokI	GGATG	2 cut(s)	485, 987
FriOI	GRGCYC	2 cut(s)	720, 990
Fsp4HI	GCNGC	2 cut(s)	86, 383
GlaI	GCGC	2 cut(s)	338, 958
GluI	GCNGC	2 cut(s)	86, 383
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	4 cut(s)	728, 911, 1022, 1061
HapII	CCGG	2 cut(s)	793, 1040
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	339, 959
Hin1II	CATG	5 cut(s)	308, 525, 727, 995, 1019
Hin6I	GCGC	2 cut(s)	337, 957
HinP1I	GCGC	2 cut(s)	337, 957
HindIII	AAGCTT	2 cut(s)	600, 854
HinfI	GANTC	5 cut(s)	271, 308, 389, 578, 701
HpaII	CCGG	2 cut(s)	793, 1040
HphI	GGTGA	1 cut(s)	641
Hpy188I	TCNGA	4 cut(s)	773, 890, 904, 1106
Hpy188III	TCNNGA	8 cut(s)	110, 170, 268, 305, 575, 705, 935, 1055
HpyAV	CCTTC	6 cut(s)	64, 457, 601, 652, 706, 811
HpyCH4IV	ACGT	2 cut(s)	55, 1099
HpyCH4V	TGCA	1 cut(s)	512
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
HpyF3I	CTNAG	9 cut(s)	128, 226, 397, 477, 495, 531, 798, 831, 849
HpySE526I	ACGT	2 cut(s)	55, 1099
Hsp92II	CATG	5 cut(s)	308, 525, 727, 995, 1019
HspAI	GCGC	2 cut(s)	337, 957
KpnI	GGTACC	1 cut(s)	967
Kzo9I	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
LmnI	GCTCC	5 cut(s)	419, 610, 715, 752, 985
Lsp1109I	GCAGC	2 cut(s)	97, 394
LweI	GCATC	1 cut(s)	463
MaeII	ACGT	2 cut(s)	55, 1099
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	6 cut(s)	168, 261, 291, 746, 887, 917
MboI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
MboII	GAAGA	5 cut(s)	269, 547, 754, 1028, 1059
MflI	RGATCY	3 cut(s)	166, 744, 915
MhlI	GDGCHC	3 cut(s)	720, 757, 990
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	6 cut(s)	20, 321, 361, 452, 806, 1092
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	3 cut(s)	317, 383, 572
MmeI	TCCRAC	1 cut(s)	783
MnlI	CCTC	9 cut(s)	187, 306, 474, 492, 520, 886, 1012, 1051, 1062
Mox20I	TGGCCA	1 cut(s)	911
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	4 cut(s)	101, 213, 858, 1091
MslI	CAYNNNNRTG	2 cut(s)	996, 1083
Msp20I	TGGCCA	1 cut(s)	911
MspI	CCGG	2 cut(s)	793, 1040
MspR9I	CCNGG	5 cut(s)	9, 62, 644, 793, 794
MvaI	CCWGG	3 cut(s)	9, 62, 644
MvnI	CGCG	1 cut(s)	959
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
NciI	CCSGG	2 cut(s)	793, 794
NdeII	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
NlaIII	CATG	5 cut(s)	308, 525, 727, 995, 1019
NlaIV	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
PagI	TCATGA	1 cut(s)	304
PfeI	GAWTC	2 cut(s)	271, 701
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	2 cut(s)	87, 384
PleI	GAGTC	3 cut(s)	316, 383, 572
PpsI	GAGTC	3 cut(s)	316, 383, 572
Ppu21I	YACGTR	1 cut(s)	56
PpuMI	RGGWCCY	1 cut(s)	664
Psp124BI	GAGCTC	1 cut(s)	720
Psp5II	RGGWCCY	1 cut(s)	664
Psp6I	CCWGG	3 cut(s)	7, 60, 642
PspGI	CCWGG	3 cut(s)	7, 60, 642
PspN4I	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
PspPI	GGNCC	4 cut(s)	49, 664, 769, 1115
PspPPI	RGGWCCY	1 cut(s)	664
PsuI	RGATCY	3 cut(s)	166, 744, 915
RsaI	GTAC	3 cut(s)	75, 359, 965
RsaNI	GTAC	3 cut(s)	74, 358, 964
RseI	CAYNNNNRTG	2 cut(s)	996, 1083
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	101, 213, 858, 1091
SatI	GCNGC	2 cut(s)	86, 383
Sau3AI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
Sau96I	GGNCC	4 cut(s)	49, 664, 769, 1115
SchI	GAGTC	3 cut(s)	317, 383, 572
ScrFI	CCNGG	5 cut(s)	9, 62, 644, 793, 794
SduI	GDGCHC	3 cut(s)	720, 757, 990
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	4 cut(s)	49, 664, 769, 1115
SmaI	CCCGGG	1 cut(s)	794
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1083
SmlI	CTYRAG	4 cut(s)	108, 140, 170, 182
SmoI	CTYRAG	4 cut(s)	108, 140, 170, 182
SnaBI	TACGTA	1 cut(s)	56
Sse9I	AATT	6 cut(s)	20, 321, 361, 452, 806, 1092
SsiI	CCGC	1 cut(s)	959
SspI	AATATT	1 cut(s)	556
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	5 cut(s)	7, 60, 642, 791, 792
StyI	CCWWGG	2 cut(s)	624, 1023
TaiI	ACGT	2 cut(s)	58, 1102
TaqI	TCGA	3 cut(s)	157, 311, 720
TasI	AATT	6 cut(s)	20, 321, 361, 452, 806, 1092
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	2 cut(s)	271, 701
Tru1I	TTAA	4 cut(s)	101, 213, 858, 1091
Tru9I	TTAA	4 cut(s)	101, 213, 858, 1091
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	2 cut(s)	85, 382
TspDTI	ATGAA	4 cut(s)	23, 270, 1008, 1034
TspMI	CCCGGG	1 cut(s)	792
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	4 cut(s)	49, 664, 769, 1115
XapI	RAATTY	1 cut(s)	806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XmaI	CCCGGG	1 cut(s)	792

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.