Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

70804526 .. 70814940

Gene Structure 10415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAGCTCAGAGAGGAGTTGTCTGACTTGGAGAAGATCCACAAACAGGTTGAGAAGATAGTCAATGAGGGGCAGAAAGCTCTGTTAGAATCTCCAGAGCAAAAGGAAGACCTAAGAAAACAGCTTGAGAAAAGTGAAGCTCAAAACAAAGATCTTAAGAAAGAACTTGAGAAGAGTGAGGCTCAAAATAAAGAGCTTCACAATATAGTCTTAGACCAGCATGCAGCCTTGTCAAGCTATGAAGATCAAATCAAGAATCTAAAGAAAGAACTTGATCAGGCTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGTGATGGCTTGATTAGCAAGTACAACCAAGCATTGAAGCAGCGAGACTCAGCCTTAGAGAAGTTGAATACCATTGGAGCAGAGCTAAAGGAGGCGCAAAAAGACTTGGAATTGAGCAAGAATGTCTGGGATGCTGAGAGGATAGCTTTGACTGAGAGGCTTACTGAGGCGAAAAAGGCGTGGGAGGCTGAGAGGATGGCACTGACAAGTACAATTTTGACGCACCAGGACTCCACTTGGAAATACAACCAAGCTTTAAAGGAGCGAGACTCAGCCTTGAAGGAGGTCCAAAAAGATTTGTCCAAGTCCCGGGTTGAGTTGGAATCAGGAAAGAAGGACCTCAACACAGCCATGAACGAGCTGAACATTTTGGGAGCAGAGCTAAATGAGGTTCGAAAGGACTTGTCCAAGTCCCGGGCTAAGTTGGAATTAGGCCAGAAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGGAAACTCTGATCTCAGAGAGGAGTTGTATGACTTGGCCAAGATCCACGAGGAGCACATTAAAGAAAATGAGAATGCATATTGTACAGGGTACCTGACTGGGTGGTTCAGGGAGCCTCATGAATATATTTCCCTGCGAGGCTATGAGGCCAAGGAAGTTACTCTTCCGGTTCACAATCCTCTGGAGGCCACATCTTCACATTCTCATTCTCGTGCCACAATTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

354

Amino Acids

40.71

Weight (kDa)

5.89

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	906
AccB1I	GGYRCC	1 cut(s)	906
AclWI	GGATC	2 cut(s)	31, 853
AcoI	YGGCCR	1 cut(s)	852
AfaI	GTAC	4 cut(s)	344, 532, 901, 908
AfiI	CCNNNNNNNGG	3 cut(s)	46, 630, 735
AflII	CTTAAG	1 cut(s)	155
AgsI	TTSAA	3 cut(s)	358, 388, 601
AjnI	CCWGG	1 cut(s)	546
Alw21I	GWGCWC	2 cut(s)	9, 873
Alw26I	GTCTC	2 cut(s)	360, 582
AlwI	GGATC	2 cut(s)	31, 853
Ama87I	CYCGRG	2 cut(s)	630, 735
AoxI	GGCC	4 cut(s)	754, 852, 963, 1002
ApeKI	GCWGC	2 cut(s)	224, 361
Asp718I	GGTACC	1 cut(s)	906
AspLEI	GCGC	1 cut(s)	418
AspS9I	GGNCC	3 cut(s)	607, 658, 1058
AsuC2I	CCSGG	4 cut(s)	631, 632, 736, 737
AsuII	TTCGAA	1 cut(s)	715
AvaI	CYCGRG	2 cut(s)	630, 735
AvaII	GGWCC	3 cut(s)	607, 658, 1058
BalI	TGGCCA	1 cut(s)	854
BanI	GGYRCC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	9
BauI	CACGAG	2 cut(s)	863, 1026
BbsI	GAAGAC	1 cut(s)	114
Bbv12I	GWGCWC	2 cut(s)	9, 873
BbvI	GCAGC	2 cut(s)	236, 373
BccI	CCATC	3 cut(s)	320, 511, 775
BciT130I	CCWGG	1 cut(s)	548
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	4 cut(s)	631, 632, 736, 737
BcoDI	GTCTC	2 cut(s)	360, 582
BfrI	CTTAAG	1 cut(s)	155
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	2 cut(s)	225, 362
BlsI	GCNGC	2 cut(s)	226, 363
Bme1390I	CCNGG	5 cut(s)	548, 631, 632, 736, 737
Bme18I	GGWCC	3 cut(s)	607, 658, 1058
BmeT110I	CYCGRG	2 cut(s)	630, 735
BmgT120I	GGNCC	3 cut(s)	607, 658, 1058
BmiI	GGNNCC	2 cut(s)	908, 930
BmrFI	CCNGG	5 cut(s)	548, 631, 632, 736, 737
BmrI	ACTGGG	1 cut(s)	924
BmsI	GCATC	1 cut(s)	442
BmuI	ACTGGG	1 cut(s)	924
BpiI	GAAGAC	1 cut(s)	114
BplI	GAGNNNNNCTC	4 cut(s)	166, 198, 575, 607
BpmI	CTGGAG	2 cut(s)	78, 1019
Bpu14I	TTCGAA	1 cut(s)	715
BpuEI	CTTGAG	2 cut(s)	146, 188
BpuMI	CCSGG	4 cut(s)	631, 632, 736, 737
BsaJI	CCNNGG	3 cut(s)	630, 735, 966
BsaWI	WCCGGW	1 cut(s)	982
BsaXI	ACNNNNNCTCC	2 cut(s)	536, 566
Bsc4I	CCNNNNNNNGG	3 cut(s)	46, 630, 735
Bse1I	ACTGG	1 cut(s)	919
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	3 cut(s)	630, 735, 966
BseGI	GGATG	2 cut(s)	457, 522
BseLI	CCNNNNNNNGG	3 cut(s)	46, 630, 735
BseMII	CTCAG	9 cut(s)	22, 384, 447, 465, 477, 501, 606, 765, 844
BseNI	ACTGG	1 cut(s)	919
BseRI	GAGGAG	4 cut(s)	29, 313, 851, 881
BseXI	GCAGC	2 cut(s)	236, 373
BshFI	GGCC	4 cut(s)	756, 854, 965, 1004
BshNI	GGYRCC	1 cut(s)	906
BsiHKAI	GWGCWC	2 cut(s)	9, 873
BsiHKCI	CYCGRG	2 cut(s)	630, 735
BsiSI	CCGG	3 cut(s)	631, 736, 983
BslFI	GGGAC	2 cut(s)	613, 718
BslI	CCNNNNNNNGG	3 cut(s)	46, 630, 735
BsmAI	GTCTC	2 cut(s)	360, 582
BsmFI	GGGAC	2 cut(s)	613, 718
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	4 cut(s)	756, 854, 965, 1004
BsoBI	CYCGRG	2 cut(s)	630, 735
Bsp119I	TTCGAA	1 cut(s)	715
Bsp1286I	GDGCHC	2 cut(s)	9, 873
Bsp1407I	TGTACA	1 cut(s)	899
Bsp143I	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
BspANI	GGCC	4 cut(s)	756, 854, 965, 1004
BspCNI	CTCAG	9 cut(s)	21, 383, 448, 466, 478, 502, 605, 766, 843
BspHI	TCATGA	2 cut(s)	289, 934
BspLI	GGNNCC	2 cut(s)	908, 930
BspPI	GGATC	2 cut(s)	31, 853
BspT104I	TTCGAA	1 cut(s)	715
BspT107I	GGYRCC	1 cut(s)	906
BspTI	CTTAAG	1 cut(s)	155
BsrGI	TGTACA	1 cut(s)	899
BsrI	ACTGG	1 cut(s)	919
BssECI	CCNNGG	3 cut(s)	630, 735, 966
BssMI	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
BssSI	CACGAG	2 cut(s)	863, 1026
BssT1I	CCWWGG	1 cut(s)	966
Bst2BI	CACGAG	2 cut(s)	863, 1026
Bst2UI	CCWGG	1 cut(s)	548
Bst6I	CTCTTC	2 cut(s)	167, 984
BstAFI	CTTAAG	1 cut(s)	155
BstAUI	TGTACA	1 cut(s)	899
BstBI	TTCGAA	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	222, 283
BstF5I	GGATG	2 cut(s)	457, 522
BstHHI	GCGC	1 cut(s)	418
BstKTI	GATC	6 cut(s)	39, 154, 247, 277, 829, 861
BstMAI	GTCTC	2 cut(s)	360, 582
BstMBI	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
BstMWI	GCNNNNNNNGC	3 cut(s)	336, 497, 506
BstNI	CCWGG	1 cut(s)	548
BstNSI	RCATGY	1 cut(s)	224
BstSCI	CCNGG	5 cut(s)	546, 629, 630, 734, 735
BstV1I	GCAGC	2 cut(s)	236, 373
BstV2I	GAAGAC	1 cut(s)	114
BstX2I	RGATCY	3 cut(s)	36, 151, 858
BstYI	RGATCY	3 cut(s)	36, 151, 858
BsuRI	GGCC	4 cut(s)	756, 854, 965, 1004
BtsCI	GGATG	2 cut(s)	457, 522
BtsIMutI	CAGTG	1 cut(s)	521
Cac8I	GCNNGC	2 cut(s)	222, 283
CciI	TCATGA	2 cut(s)	289, 934
CfoI	GCGC	1 cut(s)	418
Cfr13I	GGNCC	3 cut(s)	607, 658, 1058
Cfr9I	CCCGGG	2 cut(s)	630, 735
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	4 cut(s)	343, 531, 900, 907
CviAII	CATG	4 cut(s)	221, 290, 673, 935
CviQI	GTAC	4 cut(s)	343, 531, 900, 907
DpnI	GATC	6 cut(s)	38, 153, 246, 276, 828, 860
DpnII	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
DraI	TTTAAA	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	852
Eam1104I	CTCTTC	2 cut(s)	167, 984
EarI	CTCTTC	2 cut(s)	167, 984
Ecl136II	GAGCTC	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	966
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	3 cut(s)	607, 658, 1058
Eco53kI	GAGCTC	1 cut(s)	7
Eco88I	CYCGRG	2 cut(s)	630, 735
EcoICRI	GAGCTC	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	966
EcoT22I	ATGCAT	1 cut(s)	895
EcoT38I	GRGCYC	1 cut(s)	9
ErhI	CCWWGG	1 cut(s)	966
FaeI	CATG	4 cut(s)	224, 293, 676, 938
FalI	AAGNNNNNCTT	2 cut(s)	963, 995
FaqI	GGGAC	2 cut(s)	613, 718
FatI	CATG	4 cut(s)	220, 289, 672, 934
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	225, 362
FokI	GGATG	2 cut(s)	464, 529
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	2 cut(s)	225, 362
GlaI	GCGC	1 cut(s)	417
GluI	GCNGC	2 cut(s)	225, 362
GsuI	CTGGAG	2 cut(s)	78, 1019
HaeIII	GGCC	4 cut(s)	756, 854, 965, 1004
HapII	CCGG	3 cut(s)	631, 736, 983
HgaI	GACGC	1 cut(s)	550
HhaI	GCGC	1 cut(s)	418
Hin1II	CATG	4 cut(s)	224, 293, 676, 938
Hin6I	GCGC	1 cut(s)	416
HinP1I	GCGC	1 cut(s)	416
HindIII	AAGCTT	2 cut(s)	573, 797
HinfI	GANTC	7 cut(s)	89, 256, 293, 368, 551, 590, 644
HpaII	CCGG	3 cut(s)	631, 736, 983
Hpy166II	GTNNAC	1 cut(s)	988
Hpy188I	TCNGA	5 cut(s)	11, 25, 826, 833, 1049
Hpy188III	TCNNGA	6 cut(s)	95, 253, 290, 648, 935, 998
Hpy8I	GTNNAC	1 cut(s)	988
HpyAV	CCTTC	3 cut(s)	595, 649, 754
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	2 cut(s)	224, 893
HpyF10VI	GCNNNNNNNGC	3 cut(s)	336, 497, 506
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	4 cut(s)	224, 293, 676, 938
HspAI	GCGC	1 cut(s)	416
KpnI	GGTACC	1 cut(s)	910
Ksp22I	TGATCA	1 cut(s)	274
Kzo9I	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
LmnI	GCTCC	6 cut(s)	4, 398, 583, 695, 868, 928
Lsp1109I	GCAGC	2 cut(s)	236, 373
LweI	GCATC	1 cut(s)	442
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	1 cut(s)	973
MalI	GATC	6 cut(s)	38, 153, 246, 276, 828, 860
MboI	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
MboII	GAAGA	8 cut(s)	46, 67, 119, 184, 254, 790, 971, 1002
MflI	RGATCY	3 cut(s)	36, 151, 858
MhlI	GDGCHC	2 cut(s)	9, 873
MlsI	TGGCCA	1 cut(s)	854
MluCI	AATT	5 cut(s)	306, 431, 534, 749, 1035
MluNI	TGGCCA	1 cut(s)	854
MlyI	GAGTC	4 cut(s)	302, 362, 545, 584
MmeI	TCCRAC	2 cut(s)	621, 726
Mox20I	TGGCCA	1 cut(s)	854
Mph1103I	ATGCAT	1 cut(s)	895
MscI	TGGCCA	1 cut(s)	854
MseI	TTAA	4 cut(s)	156, 578, 801, 876
MslI	CAYNNNNRTG	2 cut(s)	671, 1026
Msp20I	TGGCCA	1 cut(s)	854
MspCI	CTTAAG	1 cut(s)	155
MspI	CCGG	3 cut(s)	631, 736, 983
MspR9I	CCNGG	5 cut(s)	548, 631, 632, 736, 737
Mva1269I	GAATGC	1 cut(s)	895
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	3 cut(s)	336, 497, 506
NciI	CCSGG	4 cut(s)	631, 632, 736, 737
NdeII	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
NlaIII	CATG	4 cut(s)	224, 293, 676, 938
NlaIV	GGNNCC	2 cut(s)	908, 930
NsiI	ATGCAT	1 cut(s)	895
NspI	RCATGY	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	715
PaeI	GCATGC	1 cut(s)	224
PagI	TCATGA	2 cut(s)	289, 934
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	3 cut(s)	89, 256, 644
PkrI	GCNGC	2 cut(s)	226, 363
PleI	GAGTC	4 cut(s)	301, 362, 545, 584
PpsI	GAGTC	4 cut(s)	301, 362, 545, 584
PpuMI	RGGWCCY	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	9
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	2 cut(s)	908, 930
PspPI	GGNCC	3 cut(s)	607, 658, 1058
PspPPI	RGGWCCY	1 cut(s)	658
PsuI	RGATCY	3 cut(s)	36, 151, 858
RsaI	GTAC	4 cut(s)	344, 532, 901, 908
RsaNI	GTAC	4 cut(s)	343, 531, 900, 907
RseI	CAYNNNNRTG	2 cut(s)	671, 1026
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	156, 578, 801, 876
SatI	GCNGC	2 cut(s)	225, 362
Sau3AI	GATC	6 cut(s)	36, 151, 244, 274, 826, 858
Sau96I	GGNCC	3 cut(s)	607, 658, 1058
SchI	GAGTC	4 cut(s)	302, 362, 545, 584
ScrFI	CCNGG	5 cut(s)	548, 631, 632, 736, 737
SduI	GDGCHC	2 cut(s)	9, 873
SfaNI	GCATC	1 cut(s)	442
SfuI	TTCGAA	1 cut(s)	715
SinI	GGWCC	3 cut(s)	607, 658, 1058
SmaI	CCCGGG	2 cut(s)	632, 737
SmiMI	CAYNNNNRTG	2 cut(s)	671, 1026
SmlI	CTYRAG	3 cut(s)	125, 155, 167
SmoI	CTYRAG	3 cut(s)	125, 155, 167
SphI	GCATGC	1 cut(s)	224
Sse9I	AATT	5 cut(s)	306, 431, 534, 749, 1035
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	5 cut(s)	546, 629, 630, 734, 735
StyI	CCWWGG	1 cut(s)	966
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	2 cut(s)	296, 715
TasI	AATT	5 cut(s)	306, 431, 534, 749, 1035
TatI	WGTACW	3 cut(s)	342, 530, 899
TfiI	GAWTC	3 cut(s)	89, 256, 644
Tru1I	TTAA	4 cut(s)	156, 578, 801, 876
Tru9I	TTAA	4 cut(s)	156, 578, 801, 876
TscAI	CASTG	1 cut(s)	528
TseI	GCWGC	2 cut(s)	224, 361
TspDTI	ATGAA	3 cut(s)	255, 689, 951
TspMI	CCCGGG	2 cut(s)	630, 735
TspRI	CASTG	1 cut(s)	528
Vha464I	CTTAAG	1 cut(s)	155
VpaK11BI	GGWCC	3 cut(s)	607, 658, 1058
XceI	RCATGY	1 cut(s)	224
XmaI	CCCGGG	2 cut(s)	630, 735
Zsp2I	ATGCAT	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.