Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

71045024 .. 71047162

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG443100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACCTTGAAACCTCAGATTTTGTTGATTTTGCAACAACCGCTCAAGTTTGCAATGGTTCCAGGAGAACTTCATCTTGGGAAATTGCATCAAGATTTACTGGACCTGCGCGGTCATTTTGAGAAGTTAGTCCTTGAGCTTCAAAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGATCTTGAGAAACAACTTGACGAGAGCGAAAATAAAAGAGAAGAGCTTAACAAGCTAGTCCTGGACTATGAAGGTAATATCAAGGATCTTAAGGATGATCTTGAGCAACGTGAAGCTCAAACAAAGGATCCTAAGAATAGTGTTGATCAGAGTGAAGATGGCATTAAGAAAGAACTTGATCAGGTTAGCTTTTATGAGTCGAGGATTGAAAATATGACCAAAGAGCGTGATGGCTTAATTAACAAGTTGAAAAGCGTTGGAGCAGAGCTAAAGGAAGCCCAAGAGGACTTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAAGATGGAACTGACTAAAAAGCTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAAAGGAGCTCAGAGAGGAGTTGTCTGACTTGGAGAAGATCCACAAGCAGTACATTCAAGAAAATGAGAACGCATATTGCTCAGGGTACCTGACTGGTTGGTTCAAGGAGCCTCATGCCTACATTTCCCTGCCAAGCCATGGGGCCAAGGAAGTTACTCTTCTAGATCATGAACCTCTGGAGGCCACGTCTCCACTCTCTCACACTAGTGCCTTAATTAAAATTTTCGGAAGTGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

283

Amino Acids

32.66

Weight (kDa)

5.19

Isoelectric Point (pI)

37.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
Acc65I	GGTACC	1 cut(s)	693
AccB1I	GGYRCC	1 cut(s)	693
AccB7I	CCANNNNNTGG	1 cut(s)	746
AccBSI	CCGCTC	1 cut(s)	43
AccII	CGCG	1 cut(s)	111
AciI	CCGC	2 cut(s)	41, 111
AclWI	GGATC	5 cut(s)	270, 299, 312, 640, 839
AcsI	RAATTY	1 cut(s)	828
AfaI	GTAC	2 cut(s)	659, 695
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflII	CTTAAG	1 cut(s)	266
AgsI	TTSAA	6 cut(s)	10, 143, 386, 427, 665, 712
AhlI	ACTAGT	1 cut(s)	812
AjiI	CACGTC	1 cut(s)	795
AjnI	CCWGG	2 cut(s)	61, 237
AjuI	GAANNNNNNNTTGG	2 cut(s)	60, 92
AleI	CACNNNNGTG	1 cut(s)	813
AluBI	AGCT	9 cut(s)	139, 149, 223, 232, 293, 366, 445, 574, 616
AluI	AGCT	9 cut(s)	139, 149, 223, 232, 293, 366, 445, 574, 616
Alw21I	GWGCWC	1 cut(s)	618
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	5 cut(s)	270, 299, 312, 640, 839
AoxI	GGCC	2 cut(s)	750, 789
ApoI	RAATTY	1 cut(s)	828
Asp718I	GGTACC	1 cut(s)	693
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	2 cut(s)	103, 750
AvaII	GGWCC	1 cut(s)	103
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	693
BanII	GRGCYC	1 cut(s)	618
Bbv12I	GWGCWC	1 cut(s)	618
BccI	CCATC	3 cut(s)	329, 401, 550
BciT130I	CCWGG	2 cut(s)	63, 239
BclI	TGATCA	2 cut(s)	322, 355
BcoDI	GTCTC	1 cut(s)	801
BcuI	ACTAGT	1 cut(s)	812
BfaI	CTAG	3 cut(s)	233, 770, 813
BfrI	CTTAAG	1 cut(s)	266
BfuAI	ACCTGC	1 cut(s)	114
BglII	AGATCT	1 cut(s)	178
Bme1390I	CCNGG	2 cut(s)	63, 239
Bme18I	GGWCC	1 cut(s)	103
BmgBI	CACGTC	1 cut(s)	795
BmgT120I	GGNCC	2 cut(s)	103, 750
BmiI	GGNNCC	5 cut(s)	60, 306, 695, 717, 751
BmrFI	CCNGG	2 cut(s)	63, 239
BmsI	GCATC	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	806
Bpu10I	CCTNAGC	1 cut(s)	688
BpuEI	CTTGAG	5 cut(s)	29, 147, 155, 203, 299
BsaJI	CCNNGG	2 cut(s)	745, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	779, 809
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse1I	ACTGG	3 cut(s)	105, 513, 706
Bse3DI	GCAATG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	63, 239
BseDI	CCNNGG	2 cut(s)	745, 753
BseGI	GGATG	1 cut(s)	277
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	1 cut(s)	60
BseMII	CTCAG	5 cut(s)	29, 504, 540, 631, 702
BseNI	ACTGG	3 cut(s)	105, 513, 706
BseRI	GAGGAG	1 cut(s)	638
Bsh1236I	CGCG	1 cut(s)	111
BshFI	GGCC	2 cut(s)	752, 791
BshNI	GGYRCC	1 cut(s)	693
BsiHKAI	GWGCWC	1 cut(s)	618
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmAI	GTCTC	1 cut(s)	801
BsmBI	CGTCTC	1 cut(s)	801
BsnI	GGCC	2 cut(s)	752, 791
Bsp1286I	GDGCHC	1 cut(s)	618
Bsp143I	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
Bsp19I	CCATGG	1 cut(s)	745
BspACI	CCGC	2 cut(s)	41, 111
BspANI	GGCC	2 cut(s)	752, 791
BspCNI	CTCAG	5 cut(s)	28, 505, 541, 630, 701
BspFNI	CGCG	1 cut(s)	111
BspHI	TCATGA	1 cut(s)	775
BspLI	GGNNCC	5 cut(s)	60, 306, 695, 717, 751
BspMI	ACCTGC	1 cut(s)	114
BspPI	GGATC	5 cut(s)	270, 299, 312, 640, 839
BspQI	GCTCTTC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	693
BspTI	CTTAAG	1 cut(s)	266
BsrBI	CCGCTC	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	60
BsrI	ACTGG	3 cut(s)	105, 513, 706
BssECI	CCNNGG	2 cut(s)	745, 753
BssMI	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
BssT1I	CCWWGG	2 cut(s)	745, 753
Bst2UI	CCWGG	2 cut(s)	63, 239
Bst6I	CTCTTC	2 cut(s)	213, 771
BstAFI	CTTAAG	1 cut(s)	266
BstDEI	CTNAG	6 cut(s)	15, 309, 513, 549, 617, 688
BstDSI	CCRYGG	1 cut(s)	745
BstF5I	GGATG	1 cut(s)	277
BstFNI	CGCG	1 cut(s)	111
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	9 cut(s)	181, 265, 277, 307, 325, 358, 648, 775, 847
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 229
BstNI	CCWGG	2 cut(s)	63, 239
BstSCI	CCNGG	2 cut(s)	61, 237
BstUI	CGCG	1 cut(s)	111
BstX2I	RGATCY	4 cut(s)	178, 262, 304, 645
BstYI	RGATCY	4 cut(s)	178, 262, 304, 645
BsuRI	GGCC	2 cut(s)	752, 791
BtgI	CCRYGG	1 cut(s)	745
BtrI	CACGTC	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	506
BveI	ACCTGC	1 cut(s)	114
CciI	TCATGA	1 cut(s)	775
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	103, 750
Csp6I	GTAC	2 cut(s)	658, 694
CviAII	CATG	4 cut(s)	581, 722, 746, 776
CviQI	GTAC	2 cut(s)	658, 694
DdeI	CTNAG	6 cut(s)	15, 309, 513, 549, 617, 688
DpnI	GATC	9 cut(s)	180, 264, 276, 306, 324, 357, 647, 774, 846
DpnII	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
Eam1104I	CTCTTC	2 cut(s)	213, 771
EarI	CTCTTC	2 cut(s)	213, 771
Ecl136II	GAGCTC	1 cut(s)	616
Eco130I	CCWWGG	2 cut(s)	745, 753
Eco24I	GRGCYC	1 cut(s)	618
Eco47I	GGWCC	1 cut(s)	103
Eco53kI	GAGCTC	1 cut(s)	616
EcoICRI	GAGCTC	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	61, 237
EcoT14I	CCWWGG	2 cut(s)	745, 753
EcoT38I	GRGCYC	1 cut(s)	618
ErhI	CCWWGG	2 cut(s)	745, 753
Esp3I	CGTCTC	1 cut(s)	801
FaeI	CATG	4 cut(s)	584, 725, 749, 779
FaiI	YATR	9 cut(s)	246, 372, 392, 582, 682, 723, 747, 777, 850
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FatI	CATG	4 cut(s)	580, 721, 745, 775
FbaI	TGATCA	2 cut(s)	322, 355
FokI	GGATG	1 cut(s)	284
FriOI	GRGCYC	1 cut(s)	618
FspBI	CTAG	3 cut(s)	233, 770, 813
GlaI	GCGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	806
HaeIII	GGCC	2 cut(s)	752, 791
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	584, 725, 749, 779
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	572
HinfI	GANTC	1 cut(s)	374
Hpy188I	TCNGA	5 cut(s)	18, 327, 620, 634, 836
Hpy188III	TCNNGA	8 cut(s)	92, 164, 182, 278, 665, 770, 776, 785
HpyAV	CCTTC	2 cut(s)	242, 475
HpyCH4IV	ACGT	2 cut(s)	286, 794
HpyCH4V	TGCA	4 cut(s)	34, 53, 88, 530
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 229
HpyF3I	CTNAG	6 cut(s)	15, 309, 513, 549, 617, 688
HpySE526I	ACGT	2 cut(s)	286, 794
Hsp92II	CATG	4 cut(s)	584, 725, 749, 779
HspAI	GCGC	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	697
Ksp22I	TGATCA	2 cut(s)	322, 355
Kzo9I	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
LguI	GCTCTTC	1 cut(s)	213
LmnI	GCTCC	3 cut(s)	437, 613, 715
LweI	GCATC	1 cut(s)	97
MaeI	CTAG	3 cut(s)	233, 770, 813
MaeII	ACGT	2 cut(s)	286, 794
MaeIII	GTNAC	1 cut(s)	760
MalI	GATC	9 cut(s)	180, 264, 276, 306, 324, 357, 647, 774, 846
MbiI	CCGCTC	1 cut(s)	43
MboI	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
MboII	GAAGA	5 cut(s)	230, 344, 565, 655, 758
MflI	RGATCY	4 cut(s)	178, 262, 304, 645
MhlI	GDGCHC	1 cut(s)	618
MluCI	AATT	5 cut(s)	83, 414, 470, 822, 828
MlyI	GAGTC	1 cut(s)	383
MmeI	TCCRAC	1 cut(s)	415
MslI	CAYNNNNRTG	1 cut(s)	813
MspCI	CTTAAG	1 cut(s)	266
MspR9I	CCNGG	2 cut(s)	63, 239
MvaI	CCWGG	2 cut(s)	63, 239
MvnI	CGCG	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	40, 229
NcoI	CCATGG	1 cut(s)	745
NdeII	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
NlaIII	CATG	4 cut(s)	584, 725, 749, 779
NlaIV	GGNNCC	5 cut(s)	60, 306, 695, 717, 751
OliI	CACNNNNGTG	1 cut(s)	813
PacI	TTAATTAA	2 cut(s)	417, 825
PagI	TCATGA	1 cut(s)	775
PciSI	GCTCTTC	1 cut(s)	213
PflMI	CCANNNNNTGG	1 cut(s)	746
PfoI	TCCNGGA	2 cut(s)	61, 237
PleI	GAGTC	1 cut(s)	382
PpsI	GAGTC	1 cut(s)	382
Psp124BI	GAGCTC	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	61, 237
PspGI	CCWGG	2 cut(s)	61, 237
PspN4I	GGNNCC	5 cut(s)	60, 306, 695, 717, 751
PspPI	GGNCC	2 cut(s)	103, 750
PsuI	RGATCY	4 cut(s)	178, 262, 304, 645
RsaI	GTAC	2 cut(s)	659, 695
RsaNI	GTAC	2 cut(s)	658, 694
RseI	CAYNNNNRTG	1 cut(s)	813
SacI	GAGCTC	1 cut(s)	618
SapI	GCTCTTC	1 cut(s)	213
Sau3AI	GATC	9 cut(s)	178, 262, 274, 304, 322, 355, 645, 772, 844
Sau96I	GGNCC	2 cut(s)	103, 750
SchI	GAGTC	1 cut(s)	383
ScrFI	CCNGG	2 cut(s)	63, 239
SduI	GDGCHC	1 cut(s)	618
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	813
SmlI	CTYRAG	6 cut(s)	44, 134, 162, 182, 266, 278
SmoI	CTYRAG	6 cut(s)	44, 134, 162, 182, 266, 278
SpeI	ACTAGT	1 cut(s)	812
Sse9I	AATT	5 cut(s)	83, 414, 470, 822, 828
SsiI	CCGC	2 cut(s)	41, 111
SspMI	CTAG	3 cut(s)	233, 770, 813
SstI	GAGCTC	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	61, 237
StyI	CCWWGG	2 cut(s)	745, 753
TaiI	ACGT	2 cut(s)	289, 797
TaqI	TCGA	1 cut(s)	377
TasI	AATT	5 cut(s)	83, 414, 470, 822, 828
TatI	WGTACW	1 cut(s)	657
TscAI	CASTG	1 cut(s)	513
TspDTI	ATGAA	3 cut(s)	62, 261, 792
TspRI	CASTG	1 cut(s)	513
Van91I	CCANNNNNTGG	1 cut(s)	746
Vha464I	CTTAAG	1 cut(s)	266
VpaK11BI	GGWCC	1 cut(s)	103
XapI	RAATTY	1 cut(s)	828
XbaI	TCTAGA	1 cut(s)	769
XspI	CTAG	3 cut(s)	233, 770, 813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.