Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Forward (+)

20057539 .. 20061885

Gene Structure 4347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00016090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGCCCATAAAAACAAAGGTCACTCTATTGTCTCCCAAAGCTTTGAAGGAAGACCAAACACCTGCACCACAGTCAGAACTTCAAATGTGTATTTGTGGCTGTAGAGAAGGAGAACGAAGCTTTAGCGCTATTTTCCTCATAGCTGTCATCACATACTCAACTCAACCCTTGATCCAAAGAGCTGAAAGATCAGACCTTGAAACTCCACGTTTTGAAAATCACTCAAGGAAATTGCATCAAGATTTACTGGACCTGCGCGGTCATTTTGAGAAGTTAGTCCTTGAGCTTCAAAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGATCTTGAGAAACAACTTGAGGAGAGCGAAAACAAAAGGGAAGAGCTTAACAAGCTAGTCTTGGACTATGAAGGTAATATCAAGGATCTTAAGGATGATCTTGAGCAACGTGAAGCTCAAACAAAGGACCCTAAGAATAGTGTTGATCAGAGTGAAGATGGCATTAAGAAAGAACTTGATCAGGTTGGCTTTTATGAGTCGAGGATTGAAAATATGACCAAAGAGCGTGATGGCTTAATTAACAAGTTGAAAAGCGTTGGAGCAGAGCTAAAGGAAGCCCAAGAGGACTTGGAATTAGGCAAGAAGGTTTGGGAGGTTGAGAGGATAGCACTGGCTGAGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAAGATAGCACTGACGAATGAAATTCTCACAAAAGAATGCCAGGACTCCACTTGCAAATACAACCAAGCTTTGAAGGAGCGAGACGCAGTCTTGAGTGATCTGAATAACCTGGGAGTAGAGCTAGAGGAGGTTCGAAAGGACTTGTCCGAGTCCCAGGCTAACTTGGAATTAGGCAAGAAGGTTTGGGAGGCTGAGAGGATAGCACTGGCTGCGAGGCTTACTAATGCAAAGGAGGTGTGGGAGGCTGAGAGGATGGAACTGACTAAAAAGCTTAACCATGAGTTAAACAAGTTTGGAATAGAGATAAAGGAGCTCAGAGAGGAGTTGTCTGACTTGGAGAAGATCCACAAGCAGCACATTCAAGAAAATGAGAACGCATATTGCTCAGGGTACCTGACTGGATGGTTCAAGGAGCCTCATGCCTACATTTCCCTGCCAAGCCATAAGGCCAAGGAAGTTACTCTTCTAGATCATGAACCTCTGGAGGCCACGTCTCCACTCTCTCACACTAGTGCCTTAATTAAACTTTTCGGAAGTGCTGATCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

415

Amino Acids

47.66

Weight (kDa)

5.2

Isoelectric Point (pI)

39.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	70
Acc36I	ACCTGC	2 cut(s)	70, 261
Acc65I	GGTACC	1 cut(s)	1089
AccB1I	GGYRCC	1 cut(s)	1089
AccII	CGCG	1 cut(s)	258
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	4 cut(s)	166, 417, 1036, 1235
AcsI	RAATTY	1 cut(s)	720
AfaI	GTAC	1 cut(s)	1091
AfeI	AGCGCT	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	413
AhlI	ACTAGT	1 cut(s)	1208
AjiI	CACGTC	1 cut(s)	1191
AjnI	CCWGG	3 cut(s)	738, 807, 852
AleI	CACNNNNGTG	1 cut(s)	1209
Alw21I	GWGCWC	1 cut(s)	1014
Alw26I	GTCTC	3 cut(s)	36, 774, 1197
AlwI	GGATC	4 cut(s)	166, 417, 1036, 1235
Aor51HI	AGCGCT	1 cut(s)	127
AoxI	GGCC	2 cut(s)	1146, 1185
ApeKI	GCWGC	2 cut(s)	908, 1051
ApoI	RAATTY	1 cut(s)	720
Asp718I	GGTACC	1 cut(s)	1089
AspLEI	GCGC	2 cut(s)	128, 258
AspS9I	GGNCC	2 cut(s)	250, 451
AsuII	TTCGAA	1 cut(s)	832
AvaII	GGWCC	2 cut(s)	250, 451
BanI	GGYRCC	1 cut(s)	1089
BanII	GRGCYC	1 cut(s)	1014
BbsI	GAAGAC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	1014
BbvI	GCAGC	2 cut(s)	895, 1063
BccI	CCATC	4 cut(s)	476, 548, 946, 1095
BciT130I	CCWGG	3 cut(s)	740, 809, 854
BclI	TGATCA	2 cut(s)	469, 502
BcoDI	GTCTC	3 cut(s)	36, 774, 1197
BcuI	ACTAGT	1 cut(s)	1208
BfaI	CTAG	4 cut(s)	380, 821, 1166, 1209
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	129
BfrI	CTTAAG	1 cut(s)	413
BfuAI	ACCTGC	2 cut(s)	70, 261
BglII	AGATCT	1 cut(s)	325
BisI	GCNGC	2 cut(s)	909, 1052
BlsI	GCNGC	2 cut(s)	910, 1053
Bme1390I	CCNGG	3 cut(s)	740, 809, 854
Bme18I	GGWCC	2 cut(s)	250, 451
BmgBI	CACGTC	1 cut(s)	1191
BmgT120I	GGNCC	2 cut(s)	250, 451
BmiI	GGNNCC	3 cut(s)	453, 1091, 1113
BmrFI	CCNGG	3 cut(s)	740, 809, 854
BmsI	GCATC	1 cut(s)	244
BpiI	GAAGAC	1 cut(s)	57
BpmI	CTGGAG	1 cut(s)	1202
Bpu10I	CCTNAGC	1 cut(s)	1084
Bpu14I	TTCGAA	1 cut(s)	832
BpuEI	CTTGAG	7 cut(s)	208, 294, 302, 350, 362, 446, 811
BsaJI	CCNNGG	3 cut(s)	808, 852, 1149
BsaXI	ACNNNNNCTCC	2 cut(s)	1175, 1205
Bse1I	ACTGG	4 cut(s)	252, 660, 909, 1102
BseBI	CCWGG	3 cut(s)	740, 809, 854
BseDI	CCNNGG	3 cut(s)	808, 852, 1149
BseGI	GGATG	3 cut(s)	424, 957, 1106
BseMII	CTCAG	6 cut(s)	651, 687, 882, 936, 1027, 1098
BseNI	ACTGG	4 cut(s)	252, 660, 909, 1102
BseRI	GAGGAG	3 cut(s)	359, 839, 1034
BseXI	GCAGC	2 cut(s)	895, 1063
BsgI	GTGCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	258
BshFI	GGCC	2 cut(s)	1148, 1187
BshNI	GGYRCC	1 cut(s)	1089
BsiHKAI	GWGCWC	1 cut(s)	1014
BslFI	GGGAC	1 cut(s)	835
BsmAI	GTCTC	3 cut(s)	36, 774, 1197
BsmBI	CGTCTC	2 cut(s)	774, 1197
BsmFI	GGGAC	1 cut(s)	835
BsmI	GAATGC	1 cut(s)	740
BsnI	GGCC	2 cut(s)	1148, 1187
Bsp119I	TTCGAA	1 cut(s)	832
Bsp1286I	GDGCHC	1 cut(s)	1014
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	2 cut(s)	1148, 1187
BspCNI	CTCAG	6 cut(s)	652, 688, 883, 937, 1026, 1097
BspFNI	CGCG	1 cut(s)	258
BspHI	TCATGA	1 cut(s)	1171
BspLI	GGNNCC	3 cut(s)	453, 1091, 1113
BspMI	ACCTGC	2 cut(s)	70, 261
BspPI	GGATC	4 cut(s)	166, 417, 1036, 1235
BspQI	GCTCTTC	1 cut(s)	360
BspT104I	TTCGAA	1 cut(s)	832
BspT107I	GGYRCC	1 cut(s)	1089
BspTI	CTTAAG	1 cut(s)	413
BsrI	ACTGG	4 cut(s)	252, 660, 909, 1102
BssECI	CCNNGG	3 cut(s)	808, 852, 1149
BssT1I	CCWWGG	1 cut(s)	1149
Bst2UI	CCWGG	3 cut(s)	740, 809, 854
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	360, 1167
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstBI	TTCGAA	1 cut(s)	832
BstDEI	CTNAG	7 cut(s)	456, 660, 696, 891, 945, 1013, 1084
BstF5I	GGATG	3 cut(s)	424, 957, 1106
BstFNI	CGCG	1 cut(s)	258
BstH2I	RGCGCY	1 cut(s)	129
BstHHI	GCGC	2 cut(s)	128, 258
BstMAI	GTCTC	3 cut(s)	36, 774, 1197
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 908
BstNI	CCWGG	3 cut(s)	740, 809, 854
BstSCI	CCNGG	3 cut(s)	738, 807, 852
BstSFI	CTRYAG	1 cut(s)	100
BstUI	CGCG	1 cut(s)	258
BstV1I	GCAGC	2 cut(s)	895, 1063
BstV2I	GAAGAC	1 cut(s)	57
BstX2I	RGATCY	3 cut(s)	325, 409, 1041
BstYI	RGATCY	3 cut(s)	325, 409, 1041
BsuRI	GGCC	2 cut(s)	1148, 1187
BtrI	CACGTC	1 cut(s)	1191
BtsCI	GGATG	3 cut(s)	424, 957, 1106
BtsIMutI	CAGTG	3 cut(s)	653, 707, 902
BveI	ACCTGC	2 cut(s)	70, 261
CciI	TCATGA	1 cut(s)	1171
CfoI	GCGC	2 cut(s)	128, 258
Cfr13I	GGNCC	2 cut(s)	250, 451
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	1 cut(s)	1090
CviAII	CATG	3 cut(s)	977, 1118, 1172
CviQI	GTAC	1 cut(s)	1090
DdeI	CTNAG	7 cut(s)	456, 660, 696, 891, 945, 1013, 1084
Eam1104I	CTCTTC	2 cut(s)	360, 1167
EarI	CTCTTC	2 cut(s)	360, 1167
Ecl136II	GAGCTC	1 cut(s)	1012
Eco130I	CCWWGG	1 cut(s)	1149
Eco24I	GRGCYC	1 cut(s)	1014
Eco47I	GGWCC	2 cut(s)	250, 451
Eco47III	AGCGCT	1 cut(s)	127
Eco53kI	GAGCTC	1 cut(s)	1012
EcoICRI	GAGCTC	1 cut(s)	1012
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	3 cut(s)	738, 807, 852
EcoT14I	CCWWGG	1 cut(s)	1149
EcoT38I	GRGCYC	1 cut(s)	1014
ErhI	CCWWGG	1 cut(s)	1149
Esp3I	CGTCTC	2 cut(s)	774, 1197
FaeI	CATG	3 cut(s)	980, 1121, 1175
FalI	AAGNNNNNCTT	4 cut(s)	368, 400, 1146, 1178
FaqI	GGGAC	1 cut(s)	835
FatI	CATG	3 cut(s)	976, 1117, 1171
FbaI	TGATCA	2 cut(s)	469, 502
Fnu4HI	GCNGC	2 cut(s)	909, 1052
FokI	GGATG	3 cut(s)	431, 964, 1113
FriOI	GRGCYC	1 cut(s)	1014
Fsp4HI	GCNGC	2 cut(s)	909, 1052
FspBI	CTAG	4 cut(s)	380, 821, 1166, 1209
GlaI	GCGC	2 cut(s)	127, 257
GluI	GCNGC	2 cut(s)	909, 1052
GsuI	CTGGAG	1 cut(s)	1202
HaeII	RGCGCY	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	1148, 1187
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	2 cut(s)	128, 258
Hin1II	CATG	3 cut(s)	980, 1121, 1175
Hin6I	GCGC	2 cut(s)	126, 256
HinP1I	GCGC	2 cut(s)	126, 256
HindIII	AAGCTT	4 cut(s)	39, 118, 765, 968
HinfI	GANTC	3 cut(s)	521, 743, 848
Hpy188I	TCNGA	8 cut(s)	76, 193, 474, 801, 847, 1016, 1030, 1232
Hpy188III	TCNNGA	9 cut(s)	239, 311, 329, 425, 790, 1061, 1166, 1172, 1181
HpyAV	CCTTC	6 cut(s)	40, 101, 389, 622, 766, 871
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	3 cut(s)	208, 433, 1190
HpyCH4V	TGCA	5 cut(s)	65, 235, 677, 753, 926
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 908
HpyF3I	CTNAG	7 cut(s)	456, 660, 696, 891, 945, 1013, 1084
HpySE526I	ACGT	3 cut(s)	208, 433, 1190
Hsp92II	CATG	3 cut(s)	980, 1121, 1175
HspAI	GCGC	2 cut(s)	126, 256
KpnI	GGTACC	1 cut(s)	1093
Ksp22I	TGATCA	2 cut(s)	469, 502
LguI	GCTCTTC	1 cut(s)	360
LmnI	GCTCC	4 cut(s)	584, 775, 1009, 1111
Lsp1109I	GCAGC	2 cut(s)	895, 1063
LweI	GCATC	1 cut(s)	244
MaeI	CTAG	4 cut(s)	380, 821, 1166, 1209
MaeII	ACGT	3 cut(s)	208, 433, 1190
MaeIII	GTNAC	2 cut(s)	19, 1156
MboII	GAAGA	6 cut(s)	62, 377, 491, 712, 1051, 1154
MflI	RGATCY	3 cut(s)	325, 409, 1041
MhlI	GDGCHC	1 cut(s)	1014
MluCI	AATT	6 cut(s)	230, 561, 617, 720, 866, 1218
MlyI	GAGTC	3 cut(s)	530, 737, 857
MmeI	TCCRAC	1 cut(s)	562
MslI	CAYNNNNRTG	1 cut(s)	1209
MspCI	CTTAAG	1 cut(s)	413
MspR9I	CCNGG	3 cut(s)	740, 809, 854
Mva1269I	GAATGC	1 cut(s)	740
MvaI	CCWGG	3 cut(s)	740, 809, 854
MvnI	CGCG	1 cut(s)	258
MwoI	GCNNNNNNNGC	2 cut(s)	376, 908
NlaIII	CATG	3 cut(s)	980, 1121, 1175
NlaIV	GGNNCC	3 cut(s)	453, 1091, 1113
NmuCI	GTSAC	1 cut(s)	19
NspV	TTCGAA	1 cut(s)	832
OliI	CACNNNNGTG	1 cut(s)	1209
PacI	TTAATTAA	2 cut(s)	564, 1221
PagI	TCATGA	1 cut(s)	1171
PaqCI	CACCTGC	1 cut(s)	70
PciSI	GCTCTTC	1 cut(s)	360
PctI	GAATGC	1 cut(s)	740
PflFI	GACNNNGTC	1 cut(s)	785
PkrI	GCNGC	2 cut(s)	910, 1053
PleI	GAGTC	3 cut(s)	529, 737, 856
PpsI	GAGTC	3 cut(s)	529, 737, 856
PpuMI	RGGWCCY	1 cut(s)	451
Psp124BI	GAGCTC	1 cut(s)	1014
Psp5II	RGGWCCY	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	738, 807, 852
PspGI	CCWGG	3 cut(s)	738, 807, 852
PspN4I	GGNNCC	3 cut(s)	453, 1091, 1113
PspPI	GGNCC	2 cut(s)	250, 451
PspPPI	RGGWCCY	1 cut(s)	451
PsuI	RGATCY	3 cut(s)	325, 409, 1041
PsyI	GACNNNGTC	1 cut(s)	785
RsaI	GTAC	1 cut(s)	1091
RsaNI	GTAC	1 cut(s)	1090
RseI	CAYNNNNRTG	1 cut(s)	1209
SacI	GAGCTC	1 cut(s)	1014
SapI	GCTCTTC	1 cut(s)	360
SatI	GCNGC	2 cut(s)	909, 1052
Sau96I	GGNCC	2 cut(s)	250, 451
SchI	GAGTC	3 cut(s)	530, 737, 857
ScrFI	CCNGG	3 cut(s)	740, 809, 854
SduI	GDGCHC	1 cut(s)	1014
SfaNI	GCATC	1 cut(s)	244
SfcI	CTRYAG	1 cut(s)	100
SfuI	TTCGAA	1 cut(s)	832
SinI	GGWCC	2 cut(s)	250, 451
SmiMI	CAYNNNNRTG	1 cut(s)	1209
SmlI	CTYRAG	8 cut(s)	223, 281, 309, 329, 341, 413, 425, 790
SmoI	CTYRAG	8 cut(s)	223, 281, 309, 329, 341, 413, 425, 790
SpeI	ACTAGT	1 cut(s)	1208
Sse9I	AATT	6 cut(s)	230, 561, 617, 720, 866, 1218
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	4 cut(s)	380, 821, 1166, 1209
SstI	GAGCTC	1 cut(s)	1014
StyD4I	CCNGG	3 cut(s)	738, 807, 852
StyI	CCWWGG	1 cut(s)	1149
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	3 cut(s)	211, 436, 1193
TaqI	TCGA	2 cut(s)	524, 832
TasI	AATT	6 cut(s)	230, 561, 617, 720, 866, 1218
TscAI	CASTG	3 cut(s)	660, 714, 909
TseFI	GTSAC	1 cut(s)	19
TseI	GCWGC	2 cut(s)	908, 1051
Tsp45I	GTSAC	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	408, 732, 1188
TspRI	CASTG	3 cut(s)	660, 714, 909
Tth111I	GACNNNGTC	1 cut(s)	785
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	2 cut(s)	250, 451
XapI	RAATTY	1 cut(s)	720
XbaI	TCTAGA	1 cut(s)	1165
XspI	CTAG	4 cut(s)	380, 821, 1166, 1209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.