Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002544

Physical Location & Seq

Genomic Coordinates Reverse (-)

73606530 .. 73608137

Gene Structure 1608 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG427800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGTTCCAGGAGAACTTCAATTTGGGAAATTTCATCAAGTTTTACTGGACCTACGTAGCCAGGTTGAGAAGGTACTCAATGAGCAGCAGAAAGCTCTGTTAAAATCTCAAGAGCAAAAGAAAGACCTGAGAAAACAGCTTGAGAAAAGTGAAGCTCGAAACAAAGATCTTGAGAAAGAACTTGAGAAATGTGAGGCTCAAAATAAAGAGCTTAACAATATAGTCTTAGACCAGCATACAGCCTTGTCAAGCTATGAAGATCAAATCAAGACTCTAAAGAAAGAACTGGATCAGGTTGGCTCTCATGAGTCGAGGAGTGAAATTATGACCAAAGAGCGCAATGACTTGATTAGCAAGTACAATTACAACCAAGTATTGAAGCAGCGAGACTCAACCTTAGCAAAGTTGAACACCATTGGAGCAGAGCTACAGGAGGCACAAAATGACTTGGAATTAGGCAAGAAGGTTTGGGATGCTGAGAGGATAGCTTTGGCTGAGAGTATTTCCAATGCAAAGCAGGCATGGGAGGCTGACAAGATAGCACTGATTGATAATATTTTGACAAAAGAGCGTCAGGACTCCAATTTGAAATACAACCAAGCTTTGAAGGAGCTAGACACAGCCTTGAGTGAGCTGCAAAACCTGGGAGTAAAGCTGAAGGGGGTCCAAAAAGACTTATACAAGTCCAATGATGAGTTGGAATCAGGAAAGAAGGAGCTCGACATGGCCTTGAATGAACTGAAGATCTTGGGAGCACAGCTAAATGGGGTCCGAAAGGACTTGTCCAAGTCCCAGGCTAAGTTGGAATTTGGTAAGAAGGTGTGGGAGGCTGAGAAAATGGAACTGACTAAGAAGCTTAACAAGTTTGGAACAGAGATAAAGGGGATCAGAGAGGAGTTGTCTGACTTGGCCAAGATCCACGAGAAGCACATTCAAGAAAATGAGAATGCATATTGCGCAGGGTACCTGACTGGATGGTTCAGGGAACCCCATGAATATGTTTCCCTGCGAAGCCATGAGGCCAAGGAAGTTACTCTTCCGGTTGATAAACCTCTGGAGGCCACATCTTCACTTTCTCATTCTCGTGCCTTAATTAGACGTTTCGGAAGTGCTGGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

373

Amino Acids

42.63

Weight (kDa)

6.51

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002544)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g36370 FvH4_3g36370 FvH4_3g36370 FvH4_3g36370
rosa_chinensis	RchiOBHm_Chr5g0065181 RchiOBHm_Chr5g0065201 RchiOBHm_Chr5g0065211
rosa_laevigata	RLG00000035765 RLG00000035766 RLG00000035768 RLG00000035769
rosa_multiflora	Rmu_co8107252.1_g000001 Rmu_sc0000956.1_g000008 Rmu_sc0003122.1_g000003 Rmu_sc0003122.1_g000004 Rmu_sc0005450.1_g000014 Rmu_sc0028188.1_g000001
rosa_roxburghii	Rroxscaffold_1G00016090 Rroxscaffold_1G00016100 Rroxscaffold_1G00016130
rosa_rugosa	Rorug05G0369200 Rorug05G0369300 Rorug05G0369400 Rorug05G0369400 Rorug05G0369400
rosa_samantha	Rh5AG427300 Rh5AG427800 Rh5AG427900 Rh5BG442400 Rh5BG443000 Rh5BG443100 Rh5CG464900 Rh5CG465300 Rh5CG465400 Rh5DG455000 Rh5DG455100 Rh5DG455500 Rh5DG455600
rosa_wichuraiana	Rw5G040120 Rw5G040140 Rw5G040150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	958
Acc65I	GGTACC	1 cut(s)	963
AccB1I	GGYRCC	1 cut(s)	963
AclWI	GGATC	3 cut(s)	297, 893, 910
AcoI	YGGCCR	1 cut(s)	909
AcsI	RAATTY	2 cut(s)	29, 806
AcuI	CTGAAG	2 cut(s)	677, 761
AfaI	GTAC	3 cut(s)	75, 359, 965
AgsI	TTSAA	7 cut(s)	20, 379, 409, 589, 607, 733, 935
AjnI	CCWGG	4 cut(s)	7, 60, 642, 792
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
Alw21I	GWGCWC	2 cut(s)	720, 757
Alw26I	GTCTC	1 cut(s)	381
AlwI	GGATC	3 cut(s)	297, 893, 910
AoxI	GGCC	4 cut(s)	726, 909, 1020, 1059
ApeKI	GCWGC	3 cut(s)	85, 382, 634
ApoI	RAATTY	2 cut(s)	29, 806
Asp718I	GGTACC	1 cut(s)	963
AspLEI	GCGC	2 cut(s)	339, 959
AspS9I	GGNCC	4 cut(s)	49, 664, 769, 1115
AvaII	GGWCC	4 cut(s)	49, 664, 769, 1115
BalI	TGGCCA	1 cut(s)	911
BanI	GGYRCC	1 cut(s)	963
BanII	GRGCYC	1 cut(s)	720
BauI	CACGAG	2 cut(s)	920, 1083
Bbv12I	GWGCWC	2 cut(s)	720, 757
BbvI	GCAGC	3 cut(s)	97, 394, 621
BccI	CCATC	1 cut(s)	969
BciT130I	CCWGG	4 cut(s)	9, 62, 644, 794
BcoDI	GTCTC	1 cut(s)	381
BfaI	CTAG	1 cut(s)	614
BfmI	CTRYAG	1 cut(s)	428
BglII	AGATCT	2 cut(s)	166, 744
BisI	GCNGC	3 cut(s)	86, 383, 635
BlsI	GCNGC	3 cut(s)	87, 384, 636
Bme1390I	CCNGG	4 cut(s)	9, 62, 644, 794
Bme18I	GGWCC	4 cut(s)	49, 664, 769, 1115
BmgT120I	GGNCC	4 cut(s)	49, 664, 769, 1115
BmiI	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
BmrFI	CCNGG	4 cut(s)	9, 62, 644, 794
BmsI	GCATC	1 cut(s)	463
BpmI	CTGGAG	1 cut(s)	1076
Bpu10I	CCTNAGC	1 cut(s)	397
BpuEI	CTTGAG	5 cut(s)	93, 161, 191, 203, 646
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	3 cut(s)	643, 792, 1023
BsaWI	WCCGGW	1 cut(s)	1039
Bse1I	ACTGG	3 cut(s)	51, 291, 976
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	4 cut(s)	9, 62, 644, 794
BseDI	CCNNGG	3 cut(s)	643, 792, 1023
BseGI	GGATG	2 cut(s)	478, 980
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	4 cut(s)	119, 468, 486, 822
BseNI	ACTGG	3 cut(s)	51, 291, 976
BseRI	GAGGAG	2 cut(s)	328, 908
BseXI	GCAGC	3 cut(s)	97, 394, 621
BshFI	GGCC	4 cut(s)	728, 911, 1022, 1061
BshNI	GGYRCC	1 cut(s)	963
BsiHKAI	GWGCWC	2 cut(s)	720, 757
BsiSI	CCGG	1 cut(s)	1040
BslFI	GGGAC	1 cut(s)	775
BsmAI	GTCTC	1 cut(s)	381
BsmFI	GGGAC	1 cut(s)	775
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	4 cut(s)	728, 911, 1022, 1061
Bsp1286I	GDGCHC	2 cut(s)	720, 757
Bsp143I	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BspANI	GGCC	4 cut(s)	728, 911, 1022, 1061
BspCNI	CTCAG	4 cut(s)	120, 469, 487, 823
BspHI	TCATGA	1 cut(s)	304
BspLI	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
BspPI	GGATC	3 cut(s)	297, 893, 910
BspT107I	GGYRCC	1 cut(s)	963
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	3 cut(s)	51, 291, 976
BssECI	CCNNGG	3 cut(s)	643, 792, 1023
BssMI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BssSI	CACGAG	2 cut(s)	920, 1083
BssT1I	CCWWGG	1 cut(s)	1023
Bst2BI	CACGAG	2 cut(s)	920, 1083
Bst2UI	CCWGG	4 cut(s)	9, 62, 644, 794
Bst6I	CTCTTC	1 cut(s)	1041
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	8 cut(s)	128, 226, 397, 477, 495, 798, 831, 849
BstF5I	GGATG	2 cut(s)	478, 980
BstHHI	GCGC	2 cut(s)	339, 959
BstKTI	GATC	6 cut(s)	169, 262, 292, 747, 888, 918
BstMAI	GTCTC	1 cut(s)	381
BstMBI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
BstMWI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
BstNI	CCWGG	4 cut(s)	9, 62, 644, 794
BstSCI	CCNGG	4 cut(s)	7, 60, 642, 792
BstSFI	CTRYAG	1 cut(s)	428
BstSNI	TACGTA	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	97, 394, 621
BstX2I	RGATCY	3 cut(s)	166, 744, 915
BstYI	RGATCY	3 cut(s)	166, 744, 915
BsuRI	GGCC	4 cut(s)	728, 911, 1022, 1061
BtsCI	GGATG	2 cut(s)	478, 980
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	1 cut(s)	519
CciI	TCATGA	1 cut(s)	304
CfoI	GCGC	2 cut(s)	339, 959
Cfr13I	GGNCC	4 cut(s)	49, 664, 769, 1115
CseI	GACGC	1 cut(s)	560
Csp6I	GTAC	3 cut(s)	74, 358, 964
CviAII	CATG	5 cut(s)	305, 522, 724, 992, 1016
CviQI	GTAC	3 cut(s)	74, 358, 964
DdeI	CTNAG	8 cut(s)	128, 226, 397, 477, 495, 798, 831, 849
DpnI	GATC	6 cut(s)	168, 261, 291, 746, 887, 917
DpnII	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
EaeI	YGGCCR	1 cut(s)	909
Eam1104I	CTCTTC	1 cut(s)	1041
EarI	CTCTTC	1 cut(s)	1041
Ecl136II	GAGCTC	1 cut(s)	718
Eco105I	TACGTA	1 cut(s)	56
Eco130I	CCWWGG	1 cut(s)	1023
Eco24I	GRGCYC	1 cut(s)	720
Eco47I	GGWCC	4 cut(s)	49, 664, 769, 1115
Eco53kI	GAGCTC	1 cut(s)	718
Eco57I	CTGAAG	2 cut(s)	677, 761
EcoICRI	GAGCTC	1 cut(s)	718
EcoRII	CCWGG	4 cut(s)	7, 60, 642, 792
EcoT14I	CCWWGG	1 cut(s)	1023
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	720
ErhI	CCWWGG	1 cut(s)	1023
FaeI	CATG	5 cut(s)	308, 525, 727, 995, 1019
FalI	AAGNNNNNCTT	2 cut(s)	1020, 1052
FaqI	GGGAC	1 cut(s)	775
FatI	CATG	5 cut(s)	304, 521, 723, 991, 1015
Fnu4HI	GCNGC	3 cut(s)	86, 383, 635
FokI	GGATG	2 cut(s)	485, 987
FriOI	GRGCYC	1 cut(s)	720
Fsp4HI	GCNGC	3 cut(s)	86, 383, 635
FspBI	CTAG	1 cut(s)	614
FspI	TGCGCA	1 cut(s)	958
GlaI	GCGC	2 cut(s)	338, 958
GluI	GCNGC	3 cut(s)	86, 383, 635
GsuI	CTGGAG	1 cut(s)	1076
HaeIII	GGCC	4 cut(s)	728, 911, 1022, 1061
HapII	CCGG	1 cut(s)	1040
HgaI	GACGC	1 cut(s)	560
HhaI	GCGC	2 cut(s)	339, 959
Hin1II	CATG	5 cut(s)	308, 525, 727, 995, 1019
Hin6I	GCGC	2 cut(s)	337, 957
HinP1I	GCGC	2 cut(s)	337, 957
HindIII	AAGCTT	2 cut(s)	600, 854
HinfI	GANTC	5 cut(s)	271, 308, 389, 578, 701
HpaII	CCGG	1 cut(s)	1040
Hpy188I	TCNGA	4 cut(s)	773, 890, 904, 1106
Hpy188III	TCNNGA	8 cut(s)	110, 170, 268, 305, 575, 705, 935, 1055
HpyAV	CCTTC	6 cut(s)	64, 457, 601, 652, 706, 811
HpyCH4IV	ACGT	2 cut(s)	55, 1099
HpyCH4V	TGCA	3 cut(s)	512, 637, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
HpyF3I	CTNAG	8 cut(s)	128, 226, 397, 477, 495, 798, 831, 849
HpySE526I	ACGT	2 cut(s)	55, 1099
Hsp92II	CATG	5 cut(s)	308, 525, 727, 995, 1019
HspAI	GCGC	2 cut(s)	337, 957
KpnI	GGTACC	1 cut(s)	967
Kzo9I	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
LmnI	GCTCC	4 cut(s)	419, 610, 715, 752
Lsp1109I	GCAGC	3 cut(s)	97, 394, 621
LweI	GCATC	1 cut(s)	463
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	2 cut(s)	55, 1099
MaeIII	GTNAC	1 cut(s)	1030
MalI	GATC	6 cut(s)	168, 261, 291, 746, 887, 917
MboI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
MboII	GAAGA	4 cut(s)	269, 754, 1028, 1059
MflI	RGATCY	3 cut(s)	166, 744, 915
MhlI	GDGCHC	2 cut(s)	720, 757
MlsI	TGGCCA	1 cut(s)	911
MluCI	AATT	8 cut(s)	20, 29, 321, 361, 452, 583, 806, 1092
MluNI	TGGCCA	1 cut(s)	911
MlyI	GAGTC	4 cut(s)	265, 317, 383, 572
MmeI	TCCRAC	2 cut(s)	678, 783
Mox20I	TGGCCA	1 cut(s)	911
Mph1103I	ATGCAT	1 cut(s)	952
MscI	TGGCCA	1 cut(s)	911
MseI	TTAA	4 cut(s)	101, 213, 858, 1091
MslI	CAYNNNNRTG	2 cut(s)	996, 1083
Msp20I	TGGCCA	1 cut(s)	911
MspI	CCGG	1 cut(s)	1040
MspR9I	CCNGG	4 cut(s)	9, 62, 644, 794
Mva1269I	GAATGC	1 cut(s)	952
MvaI	CCWGG	4 cut(s)	9, 62, 644, 794
MwoI	GCNNNNNNNGC	3 cut(s)	518, 527, 956
NdeII	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
NlaIII	CATG	5 cut(s)	308, 525, 727, 995, 1019
NlaIV	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
NsbI	TGCGCA	1 cut(s)	958
NsiI	ATGCAT	1 cut(s)	952
PagI	TCATGA	1 cut(s)	304
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	1 cut(s)	701
PfoI	TCCNGGA	1 cut(s)	7
PkrI	GCNGC	3 cut(s)	87, 384, 636
PleI	GAGTC	4 cut(s)	265, 316, 383, 572
PpsI	GAGTC	4 cut(s)	265, 316, 383, 572
Ppu21I	YACGTR	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	720
Psp6I	CCWGG	4 cut(s)	7, 60, 642, 792
PspGI	CCWGG	4 cut(s)	7, 60, 642, 792
PspN4I	GGNNCC	5 cut(s)	6, 665, 770, 965, 987
PspPI	GGNCC	4 cut(s)	49, 664, 769, 1115
PsuI	RGATCY	3 cut(s)	166, 744, 915
RsaI	GTAC	3 cut(s)	75, 359, 965
RsaNI	GTAC	3 cut(s)	74, 358, 964
RseI	CAYNNNNRTG	2 cut(s)	996, 1083
SacI	GAGCTC	1 cut(s)	720
SaqAI	TTAA	4 cut(s)	101, 213, 858, 1091
SatI	GCNGC	3 cut(s)	86, 383, 635
Sau3AI	GATC	6 cut(s)	166, 259, 289, 744, 885, 915
Sau96I	GGNCC	4 cut(s)	49, 664, 769, 1115
SchI	GAGTC	4 cut(s)	265, 317, 383, 572
ScrFI	CCNGG	4 cut(s)	9, 62, 644, 794
SduI	GDGCHC	2 cut(s)	720, 757
SfaNI	GCATC	1 cut(s)	463
SfcI	CTRYAG	1 cut(s)	428
SinI	GGWCC	4 cut(s)	49, 664, 769, 1115
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1083
SmlI	CTYRAG	5 cut(s)	108, 140, 170, 182, 625
SmoI	CTYRAG	5 cut(s)	108, 140, 170, 182, 625
SnaBI	TACGTA	1 cut(s)	56
Sse9I	AATT	8 cut(s)	20, 29, 321, 361, 452, 583, 806, 1092
SspI	AATATT	1 cut(s)	556
SspMI	CTAG	1 cut(s)	614
SstI	GAGCTC	1 cut(s)	720
StyD4I	CCNGG	4 cut(s)	7, 60, 642, 792
StyI	CCWWGG	1 cut(s)	1023
TaiI	ACGT	2 cut(s)	58, 1102
TaqI	TCGA	3 cut(s)	157, 311, 720
TasI	AATT	8 cut(s)	20, 29, 321, 361, 452, 583, 806, 1092
TatI	WGTACW	1 cut(s)	357
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	4 cut(s)	101, 213, 858, 1091
Tru9I	TTAA	4 cut(s)	101, 213, 858, 1091
TscAI	CASTG	1 cut(s)	549
TseI	GCWGC	3 cut(s)	85, 382, 634
TspDTI	ATGAA	4 cut(s)	23, 270, 750, 1008
TspRI	CASTG	1 cut(s)	549
VpaK11BI	GGWCC	4 cut(s)	49, 664, 769, 1115
XapI	RAATTY	2 cut(s)	29, 806
XcmI	CCANNNNNNNNNTGG	1 cut(s)	694
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.