Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

16275201 .. 16276801

Gene Structure 1601 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12600.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGGGTTATGACGTGGTTGCCAGAACGATCATGATGTTTCTGTTTTCATCATCAACAGCGGCTCATGCAAACAACGTCGAGGTTGCCAAGATCTTCCACGAATGGACCATCCAACACCAGAAGGTGTACCTGAACGACTTCCACAAGGAAGAACGCTTTCAGATATTCAAAACCAACTGGGAATACGTTGAGAACTTTAAGAAGCTCCCAAATCAGACCTATACCGTAGGTCTCAATAAGTTCTCTGACTTAACCATAGAAGAATTCCTGGAAGCTTATAGTTGCGGCGGCTCAGATCCCACTCCCACAAGTACCCACTCAAACTCGACGTCCTCATCTCCTTATATCGGCATCGATTATATTGACTATGATACTTGCAATGAATCAATCGACTGGACGAAAGAAGGATATGTGTCCCGCCCTGGGCAACAAAGTCATGGTTCCACGGATTGTGGTTCATGCTGGGCGTTTGCGGCTGTAGCAGGAGTGGAAGGGATTGTACAAATTAGCAGGAACAATAAAAACATACCTCGACTATCCGTGCAGCAGCTCGTTGATTGTGATAGAAAGTATAACAATGGATGCCATGGAGGTCTCGCAATAGATGCTTATGACTATATACTAAAGAACGGAGGTATCACAAGTGCCGATAATTACCCTTATACCTATATGGAAGGACAATGCGACGTCGCTAAGGAAAAGCAGTTTGAGGCAGGCATCACCGGGTTTACTCTTGTTCCGCCCAATGACGAGTTTGCGCTGATGAAGGCAGTATGCAGGCAGCCTGTAACGGCCAGAATGACGGTGGCAAAAGGACTTCGGTGGTACACTGGTGGAGTATTCATGGAAGAGTGTGGACCCAAGTTAGGGCACGCACGCTGTGACCATTGTTGGAATGGGGAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

304

Amino Acids

33.95

Weight (kDa)

5.29

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	33 - 90	5.6e-16	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	128 - 293	3.7e-39	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	335, 693
AciI	CCGC	7 cut(s)	5, 62, 288, 291, 421, 476, 743
AclWI	GGATC	1 cut(s)	293
AcoI	YGGCCR	1 cut(s)	795
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	332, 690
AdeI	CACNNNGTG	1 cut(s)	884
AfaI	GTAC	4 cut(s)	131, 316, 504, 830
AfiI	CCNNNNNNNGG	4 cut(s)	350, 426, 869, 870
AgsI	TTSAA	1 cut(s)	172
AjiI	CACGTC	1 cut(s)	16
AjnI	CCWGG	2 cut(s)	270, 424
AluBI	AGCT	3 cut(s)	208, 278, 553
AluI	AGCT	3 cut(s)	208, 278, 553
Alw26I	GTCTC	2 cut(s)	239, 602
AlwI	GGATC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	795
ApeKI	GCWGC	3 cut(s)	547, 550, 784
ApoI	RAATTY	1 cut(s)	266
ArsI	GACNNNNNNTTYG	2 cut(s)	317, 349
Asp700I	GAANNNNTTC	2 cut(s)	140, 159
AspLEI	GCGC	1 cut(s)	763
AspS9I	GGNCC	2 cut(s)	108, 860
AsuC2I	CCSGG	1 cut(s)	727
AsuHPI	GGTGA	1 cut(s)	715
AvaII	GGWCC	2 cut(s)	108, 860
BaeGI	GKGCMC	1 cut(s)	876
BaeI	ACNNNNGTAYC	4 cut(s)	622, 655, 820, 853
BarI	GAAGNNNNNNTAC	2 cut(s)	486, 518
BbvI	GCAGC	3 cut(s)	559, 562, 796
BccI	CCATC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	810
BciT130I	CCWGG	2 cut(s)	272, 426
BcnI	CCSGG	1 cut(s)	727
BcoDI	GTCTC	2 cut(s)	239, 602
BfmI	CTRYAG	1 cut(s)	480
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	7 cut(s)	63, 289, 292, 477, 548, 551, 785
BlsI	GCNGC	7 cut(s)	64, 290, 293, 478, 549, 552, 786
Bme1390I	CCNGG	3 cut(s)	272, 426, 727
Bme18I	GGWCC	2 cut(s)	108, 860
BmgBI	CACGTC	1 cut(s)	16
BmgT120I	GGNCC	2 cut(s)	108, 860
BmiI	GGNNCC	2 cut(s)	445, 862
BmrFI	CCNGG	3 cut(s)	272, 426, 727
BmrI	ACTGGG	1 cut(s)	190
BmsI	GCATC	4 cut(s)	363, 575, 598, 729
BmuI	ACTGGG	1 cut(s)	190
Bpu10I	CCTNAGC	1 cut(s)	696
BpuMI	CCSGG	1 cut(s)	727
Bsa29I	ATCGAT	1 cut(s)	357
BsaHI	GRCGYC	2 cut(s)	332, 690
BsaI	GGTCTC	2 cut(s)	239, 602
BsaJI	CCNNGG	4 cut(s)	424, 425, 447, 589
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 426, 869, 870
Bse1I	ACTGG	3 cut(s)	185, 401, 838
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	2 cut(s)	272, 426
BseCI	ATCGAT	1 cut(s)	357
BseDI	CCNNGG	4 cut(s)	424, 425, 447, 589
BseGI	GGATG	2 cut(s)	111, 590
BseLI	CCNNNNNNNGG	4 cut(s)	350, 426, 869, 870
BseMI	GCAATG	1 cut(s)	388
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	3 cut(s)	185, 401, 838
BseSI	GKGCMC	1 cut(s)	876
BseXI	GCAGC	3 cut(s)	559, 562, 796
BseYI	CCCAGC	1 cut(s)	465
BsgI	GTGCAG	1 cut(s)	566
BshFI	GGCC	1 cut(s)	797
BshVI	ATCGAT	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	726
BslFI	GGGAC	1 cut(s)	403
BslI	CCNNNNNNNGG	4 cut(s)	350, 426, 869, 870
BsmAI	GTCTC	2 cut(s)	239, 602
BsmFI	GGGAC	1 cut(s)	403
BsnI	GGCC	1 cut(s)	797
Bso31I	GGTCTC	2 cut(s)	239, 602
Bsp1286I	GDGCHC	1 cut(s)	876
Bsp1407I	TGTACA	1 cut(s)	502
Bsp143I	GATC	3 cut(s)	30, 93, 298
Bsp19I	CCATGG	1 cut(s)	589
BspACI	CCGC	7 cut(s)	5, 62, 288, 291, 421, 476, 743
BspANI	GGCC	1 cut(s)	797
BspCNI	CTCAG	1 cut(s)	308
BspDI	ATCGAT	1 cut(s)	357
BspHI	TCATGA	1 cut(s)	33
BspLI	GGNNCC	2 cut(s)	445, 862
BspPI	GGATC	1 cut(s)	293
BspTNI	GGTCTC	2 cut(s)	239, 602
BsrDI	GCAATG	1 cut(s)	388
BsrGI	TGTACA	1 cut(s)	502
BsrI	ACTGG	3 cut(s)	185, 401, 838
BssECI	CCNNGG	4 cut(s)	424, 425, 447, 589
BssMI	GATC	3 cut(s)	30, 93, 298
BssNI	GRCGYC	2 cut(s)	332, 690
BssT1I	CCWWGG	1 cut(s)	589
Bst2UI	CCWGG	2 cut(s)	272, 426
Bst4CI	ACNGT	2 cut(s)	229, 808
Bst6I	CTCTTC	1 cut(s)	846
BstACI	GRCGYC	2 cut(s)	332, 690
BstAPI	GCANNNNNTGC	1 cut(s)	608
BstAUI	TGTACA	1 cut(s)	502
BstC8I	GCNNGC	4 cut(s)	718, 782, 876, 880
BstDEI	CTNAG	2 cut(s)	295, 696
BstDSI	CCRYGG	2 cut(s)	447, 589
BstF5I	GGATG	2 cut(s)	111, 590
BstHHI	GCGC	1 cut(s)	763
BstKTI	GATC	3 cut(s)	33, 96, 301
BstMAI	GTCTC	2 cut(s)	239, 602
BstMBI	GATC	3 cut(s)	30, 93, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 476, 482, 608
BstNI	CCWGG	2 cut(s)	272, 426
BstSCI	CCNGG	3 cut(s)	270, 424, 725
BstSFI	CTRYAG	1 cut(s)	480
BstSLI	GKGCMC	1 cut(s)	876
BstV1I	GCAGC	3 cut(s)	559, 562, 796
BstX2I	RGATCY	2 cut(s)	93, 298
BstYI	RGATCY	2 cut(s)	93, 298
Bsu15I	ATCGAT	1 cut(s)	357
BsuRI	GGCC	1 cut(s)	797
BsuTUI	ATCGAT	1 cut(s)	357
BtgI	CCRYGG	2 cut(s)	447, 589
BtrI	CACGTC	1 cut(s)	16
BtsCI	GGATG	2 cut(s)	111, 590
BtsIMutI	CAGTG	1 cut(s)	831
Cac8I	GCNNGC	4 cut(s)	718, 782, 876, 880
CciI	TCATGA	1 cut(s)	33
CfoI	GCGC	1 cut(s)	763
Cfr13I	GGNCC	2 cut(s)	108, 860
ClaI	ATCGAT	1 cut(s)	357
Csp6I	GTAC	4 cut(s)	130, 315, 503, 829
CviAII	CATG	6 cut(s)	34, 68, 440, 462, 590, 847
CviJI	RGCY	8 cut(s)	65, 208, 278, 294, 479, 553, 787, 797
CviKI_1	RGCY	8 cut(s)	65, 208, 278, 294, 479, 553, 787, 797
CviQI	GTAC	4 cut(s)	130, 315, 503, 829
DdeI	CTNAG	2 cut(s)	295, 696
DpnI	GATC	3 cut(s)	32, 95, 300
DpnII	GATC	3 cut(s)	30, 93, 298
DraIII	CACNNNGTG	1 cut(s)	884
EaeI	YGGCCR	1 cut(s)	795
Eam1104I	CTCTTC	1 cut(s)	846
EarI	CTCTTC	1 cut(s)	846
EciI	GGCGGA	1 cut(s)	732
Eco130I	CCWWGG	1 cut(s)	589
Eco31I	GGTCTC	2 cut(s)	239, 602
Eco47I	GGWCC	2 cut(s)	108, 860
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	270, 424
EcoT14I	CCWWGG	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	589
FaeI	CATG	6 cut(s)	37, 71, 443, 465, 593, 850
FaqI	GGGAC	1 cut(s)	403
FatI	CATG	6 cut(s)	33, 67, 439, 461, 589, 846
FauI	CCCGC	1 cut(s)	428
Fnu4HI	GCNGC	7 cut(s)	63, 289, 292, 477, 548, 551, 785
FokI	GGATG	2 cut(s)	98, 597
Fsp4HI	GCNGC	7 cut(s)	63, 289, 292, 477, 548, 551, 785
GlaI	GCGC	1 cut(s)	762
GluI	GCNGC	7 cut(s)	63, 289, 292, 477, 548, 551, 785
GsaI	CCCAGC	1 cut(s)	469
HaeIII	GGCC	1 cut(s)	797
HapII	CCGG	1 cut(s)	726
HhaI	GCGC	1 cut(s)	763
Hin1I	GRCGYC	2 cut(s)	332, 690
Hin1II	CATG	6 cut(s)	37, 71, 443, 465, 593, 850
Hin6I	GCGC	1 cut(s)	761
HinP1I	GCGC	1 cut(s)	761
HindIII	AAGCTT	1 cut(s)	276
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	726
HphI	GGTGA	1 cut(s)	715
Hpy166II	GTNNAC	4 cut(s)	130, 732, 831, 860
Hpy188I	TCNGA	4 cut(s)	165, 219, 250, 298
Hpy188III	TCNNGA	1 cut(s)	34
Hpy8I	GTNNAC	4 cut(s)	130, 732, 831, 860
Hpy99I	CGWCG	4 cut(s)	83, 334, 692, 695
HpyAV	CCTTC	5 cut(s)	118, 401, 488, 671, 763
HpyCH4III	ACNGT	2 cut(s)	229, 808
HpyCH4IV	ACGT	5 cut(s)	15, 78, 189, 332, 690
HpyCH4V	TGCA	4 cut(s)	71, 381, 547, 780
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 476, 482, 608
HpyF3I	CTNAG	2 cut(s)	295, 696
HpySE526I	ACGT	5 cut(s)	15, 78, 189, 332, 690
Hsp92I	GRCGYC	2 cut(s)	332, 690
Hsp92II	CATG	6 cut(s)	37, 71, 443, 465, 593, 850
HspAI	GCGC	1 cut(s)	761
Kzo9I	GATC	3 cut(s)	30, 93, 298
LmnI	GCTCC	1 cut(s)	213
Lsp1109I	GCAGC	3 cut(s)	559, 562, 796
LweI	GCATC	4 cut(s)	363, 575, 598, 729
MaeII	ACGT	5 cut(s)	15, 78, 189, 332, 690
MaeIII	GTNAC	2 cut(s)	790, 884
MalI	GATC	3 cut(s)	32, 95, 300
MboI	GATC	3 cut(s)	30, 93, 298
MboII	GAAGA	4 cut(s)	88, 164, 275, 863
MflI	RGATCY	2 cut(s)	93, 298
MhlI	GDGCHC	1 cut(s)	876
MluCI	AATT	3 cut(s)	266, 507, 655
MmeI	TCCRAC	2 cut(s)	139, 875
MnlI	CCTC	6 cut(s)	76, 346, 543, 587, 629, 706
MroXI	GAANNNNTTC	2 cut(s)	140, 159
MseI	TTAA	2 cut(s)	201, 254
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	726
MspR9I	CCNGG	3 cut(s)	272, 426, 727
MvaI	CCWGG	2 cut(s)	272, 426
MwoI	GCNNNNNNNGC	4 cut(s)	68, 476, 482, 608
NciI	CCSGG	1 cut(s)	727
NcoI	CCATGG	1 cut(s)	589
NdeII	GATC	3 cut(s)	30, 93, 298
NlaIII	CATG	6 cut(s)	37, 71, 443, 465, 593, 850
NlaIV	GGNNCC	2 cut(s)	445, 862
NmuCI	GTSAC	1 cut(s)	884
PagI	TCATGA	1 cut(s)	33
PasI	CCCWGGG	1 cut(s)	425
PdmI	GAANNNNTTC	2 cut(s)	140, 159
PfeI	GAWTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	7 cut(s)	64, 290, 293, 478, 549, 552, 786
Psp6I	CCWGG	2 cut(s)	270, 424
PspFI	CCCAGC	1 cut(s)	465
PspGI	CCWGG	2 cut(s)	270, 424
PspN4I	GGNNCC	2 cut(s)	445, 862
PspPI	GGNCC	2 cut(s)	108, 860
PsuI	RGATCY	2 cut(s)	93, 298
RsaI	GTAC	4 cut(s)	131, 316, 504, 830
RsaNI	GTAC	4 cut(s)	130, 315, 503, 829
SaqAI	TTAA	2 cut(s)	201, 254
SatI	GCNGC	7 cut(s)	63, 289, 292, 477, 548, 551, 785
Sau3AI	GATC	3 cut(s)	30, 93, 298
Sau96I	GGNCC	2 cut(s)	108, 860
ScrFI	CCNGG	3 cut(s)	272, 426, 727
SduI	GDGCHC	1 cut(s)	876
SfaNI	GCATC	4 cut(s)	363, 575, 598, 729
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	108, 860
Sse9I	AATT	3 cut(s)	266, 507, 655
SsiI	CCGC	7 cut(s)	5, 62, 288, 291, 421, 476, 743
StyD4I	CCNGG	3 cut(s)	270, 424, 725
StyI	CCWWGG	1 cut(s)	589
TaaI	ACNGT	2 cut(s)	229, 808
TaiI	ACGT	5 cut(s)	18, 81, 192, 335, 693
TaqI	TCGA	5 cut(s)	81, 329, 357, 393, 535
TasI	AATT	3 cut(s)	266, 507, 655
TatI	WGTACW	1 cut(s)	502
TauI	GCSGC	4 cut(s)	65, 291, 294, 479
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	2 cut(s)	201, 254
Tru9I	TTAA	2 cut(s)	201, 254
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	1 cut(s)	884
TseI	GCWGC	3 cut(s)	547, 550, 784
Tsp45I	GTSAC	1 cut(s)	884
TspDTI	ATGAA	5 cut(s)	39, 399, 450, 782, 835
TspGWI	ACGGA	3 cut(s)	464, 532, 648
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	2 cut(s)	108, 860
XapI	RAATTY	1 cut(s)	266
XcmI	CCANNNNNNNNNTGG	2 cut(s)	805, 896
XmnI	GAANNNNTTC	2 cut(s)	140, 159
ZraI	GACGTC	2 cut(s)	333, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.