Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Forward (+)

605313 .. 605624

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG008900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTCCCAAATCTTCTCATACACAACACCCTCGTACTTGGCCGCCGCCGAGTTATCCTTGACGGCGGTGACGAGCTGGTAGTTCTCGCCGGCGACAACCTGAGTCTCGCCCTTCACCACGCTCTGAAACTCCAGCTTCTTCCCGGATTTCTTGTTGTACTCCGACACCACGAACTCCGCGATCTCCTTCACGTGGGGGTCATTGATGTCCTTAATCGGCTTCCATCCGCCGGCCAGTCTGACGCGTGCGGCGGCCGCCAGAGGGAGGAGGACGGCGAAGAGGCAGAAGAATGGACGCATCGTGACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

103

Amino Acids

11.54

Weight (kDa)

5.73

Isoelectric Point (pI)

59.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	180, 245
AciI	CCGC	8 cut(s)	43, 46, 66, 178, 228, 249, 252, 256
AcoI	YGGCCR	3 cut(s)	40, 232, 253
AcvI	CACGTG	1 cut(s)	193
AfaI	GTAC	2 cut(s)	36, 159
AfiI	CCNNNNNNNGG	4 cut(s)	193, 230, 262, 265
AflIII	ACRYGT	1 cut(s)	243
AluBI	AGCT	2 cut(s)	76, 136
AluI	AGCT	2 cut(s)	76, 136
Alw26I	GTCTC	1 cut(s)	110
AoxI	GGCC	3 cut(s)	40, 232, 253
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	80, 107
BbrPI	CACGTG	1 cut(s)	193
BccI	CCATC	1 cut(s)	232
BceAI	ACGGC	2 cut(s)	79, 289
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	110
BisI	GCNGC	5 cut(s)	43, 46, 250, 253, 256
BlsI	GCNGC	5 cut(s)	44, 47, 251, 254, 257
Bme1390I	CCNGG	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	1 cut(s)	307
BpmI	CTGGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	193
Bsc4I	CCNNNNNNNGG	4 cut(s)	193, 230, 262, 265
Bse118I	RCCGGY	2 cut(s)	89, 230
Bse1I	ACTGG	1 cut(s)	235
BseGI	GGATG	1 cut(s)	224
BseLI	CCNNNNNNNGG	4 cut(s)	193, 230, 262, 265
BseMII	CTCAG	1 cut(s)	92
BseNI	ACTGG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	281
BseX3I	CGGCCG	1 cut(s)	253
Bsh1236I	CGCG	2 cut(s)	180, 245
Bsh1285I	CGRYCG	1 cut(s)	256
BshFI	GGCC	3 cut(s)	42, 234, 255
BsiEI	CGRYCG	1 cut(s)	256
BsiSI	CCGG	3 cut(s)	90, 144, 231
BslI	CCNNNNNNNGG	4 cut(s)	193, 230, 262, 265
BsmAI	GTCTC	1 cut(s)	110
BsnI	GGCC	3 cut(s)	42, 234, 255
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	8 cut(s)	43, 46, 66, 178, 228, 249, 252, 256
BspANI	GGCC	3 cut(s)	42, 234, 255
BspCNI	CTCAG	1 cut(s)	93
BspFNI	CGCG	2 cut(s)	180, 245
BsrFI	RCCGGY	2 cut(s)	89, 230
BsrI	ACTGG	1 cut(s)	235
BssAI	RCCGGY	2 cut(s)	89, 230
BssMI	GATC	1 cut(s)	181
Bst4CI	ACNGT	1 cut(s)	308
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	91, 232, 247
BstDEI	CTNAG	1 cut(s)	101
BstF5I	GGATG	1 cut(s)	224
BstFNI	CGCG	2 cut(s)	180, 245
BstKTI	GATC	1 cut(s)	184
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	1 cut(s)	181
BstMCI	CGRYCG	1 cut(s)	256
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	2 cut(s)	180, 245
BstZI	CGGCCG	1 cut(s)	253
BsuRI	GGCC	3 cut(s)	42, 234, 255
BtsCI	GGATG	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	91, 232, 247
CciNI	GCGGCCGC	1 cut(s)	253
Cfr10I	RCCGGY	2 cut(s)	89, 230
CseI	GACGC	2 cut(s)	251, 304
Csp6I	GTAC	2 cut(s)	35, 158
CviJI	RGCY	6 cut(s)	42, 76, 136, 220, 234, 255
CviKI_1	RGCY	6 cut(s)	42, 76, 136, 220, 234, 255
CviQI	GTAC	2 cut(s)	35, 158
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
EaeI	YGGCCR	3 cut(s)	40, 232, 253
EagI	CGGCCG	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
EciI	GGCGGA	1 cut(s)	217
EclXI	CGGCCG	1 cut(s)	253
Eco52I	CGGCCG	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	193
FaiI	YATR	1 cut(s)	20
Fnu4HI	GCNGC	5 cut(s)	43, 46, 250, 253, 256
FokI	GGATG	1 cut(s)	211
Fsp4HI	GCNGC	5 cut(s)	43, 46, 250, 253, 256
GluI	GCNGC	5 cut(s)	43, 46, 250, 253, 256
GsuI	CTGGAG	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	42, 234, 255
HapII	CCGG	3 cut(s)	90, 144, 231
HgaI	GACGC	2 cut(s)	251, 304
HinfI	GANTC	1 cut(s)	103
HpaII	CCGG	3 cut(s)	90, 144, 231
HphI	GGTGA	2 cut(s)	80, 107
Hpy188I	TCNGA	3 cut(s)	126, 164, 241
Hpy188III	TCNNGA	1 cut(s)	302
HpyAV	CCTTC	2 cut(s)	122, 197
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	192
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	1 cut(s)	192
KroI	GCCGGC	2 cut(s)	89, 230
KroNI	GCCGGC	2 cut(s)	91, 232
Kzo9I	GATC	1 cut(s)	181
LpnPI	CCDG	8 cut(s)	62, 103, 113, 146, 157, 244, 248, 272
LweI	GCATC	1 cut(s)	307
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	68, 302
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	4 cut(s)	5, 131, 290, 299
MluI	ACGCGT	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	112
MmeI	TCCRAC	1 cut(s)	187
MnlI	CCTC	5 cut(s)	41, 255, 259, 262, 274
MreI	CGCCGGCG	1 cut(s)	89
MroNI	GCCGGC	2 cut(s)	89, 230
MseI	TTAA	1 cut(s)	213
MspI	CCGG	3 cut(s)	90, 144, 231
MspR9I	CCNGG	1 cut(s)	144
MvnI	CGCG	2 cut(s)	180, 245
MwoI	GCNNNNNNNGC	1 cut(s)	255
NaeI	GCCGGC	2 cut(s)	91, 232
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	181
NgoMIV	GCCGGC	2 cut(s)	89, 230
NmeAIII	GCCGAG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	68, 302
NotI	GCGGCCGC	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 177
PdiI	GCCGGC	2 cut(s)	91, 232
PfoI	TCCNGGA	1 cut(s)	142
PkrI	GCNGC	5 cut(s)	44, 47, 251, 254, 257
PleI	GAGTC	1 cut(s)	111
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	111
Ppu21I	YACGTR	1 cut(s)	193
PspCI	CACGTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	36, 159
RsaNI	GTAC	2 cut(s)	35, 158
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	5 cut(s)	43, 46, 250, 253, 256
Sau3AI	GATC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	112
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	4 cut(s)	78, 102, 138, 195
SfaNI	GCATC	1 cut(s)	307
SgrAI	CRCCGGYG	1 cut(s)	89
SsiI	CCGC	8 cut(s)	43, 46, 66, 178, 228, 249, 252, 256
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	195
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	5 cut(s)	45, 48, 252, 255, 258
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	2 cut(s)	68, 302
Tsp45I	GTSAC	2 cut(s)	68, 302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.