Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

62986631 .. 62987510

Gene Structure 880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015202

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCAGCTCCATAATATTCTGTATGGTGATGCTAAAGGATGGTTTAAAAGAACCTGTTCTTTTCTGTATCCATATGTTCTCGGAGTTGTGAACCCTGATGCTAAAGCTGTACGAGGATGGAACAAGTTCTTTGTCATATCTGTAATAGAGATAGTAGACCAACCATATAAAATTGCTCTCAATTATCTCCATGGAAACTTTTTAGTCGACTTAATTATTGTTTTGCCACTTCCTCAGATCATAATGTTGTCGGTTGTTCCTTTGGGATCATTTCGAGCAAATCAAACAAAGAATCTTCTCCGCCTGGCAGTTTTTTTTTCAATATTTGCCCAGGTTTATGGGGTTCTGCCCCTGCTTGCTGGTCAATCTCCAAATGGCTTCTTTGTATTCGAGTCAGCTTGGACAAATTTTTTTATAAACACTCTCACTGCCATGTTATTGGGTCATGCTGGTACCTCCTTCGCTTATAGAGGGTTAACCAATGTCTTCGAGATGCCTGCCATAACTCTAATCTGCAGTCATGCGGGAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

178

Amino Acids

19.74

Weight (kDa)

9.2

Isoelectric Point (pI)

24.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	416
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	1 cut(s)	452
AccI	GTMKAC	2 cut(s)	156, 207
AciI	CCGC	2 cut(s)	301, 524
AclWI	GGATC	1 cut(s)	274
AcsI	RAATTY	1 cut(s)	406
AfaI	GTAC	2 cut(s)	111, 454
AgsI	TTSAA	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	303, 330
AluBI	AGCT	3 cut(s)	7, 107, 398
AluI	AGCT	3 cut(s)	7, 107, 398
AlwI	GGATC	1 cut(s)	274
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	1 cut(s)	406
Asp700I	GAANNNNTTC	2 cut(s)	55, 125
Asp718I	GGTACC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	452
BbsI	GAAGAC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	33, 111
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BciT130I	CCWGG	2 cut(s)	305, 332
BciVI	GTATCC	1 cut(s)	78
BfmI	CTRYAG	1 cut(s)	514
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	305, 332
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	2 cut(s)	305, 332
BmsI	GCATC	3 cut(s)	19, 88, 483
BpiI	GAAGAC	1 cut(s)	478
BsaJI	CCNNGG	2 cut(s)	190, 330
BseBI	CCWGG	2 cut(s)	305, 332
BseDI	CCNNGG	2 cut(s)	190, 330
BseGI	GGATG	2 cut(s)	44, 122
BseMII	CTCAG	1 cut(s)	248
BseXI	GCAGC	1 cut(s)	16
BshNI	GGYRCC	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	237, 266
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	2 cut(s)	301, 524
BspCNI	CTCAG	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	1 cut(s)	518
BspPI	GGATC	1 cut(s)	274
BspT107I	GGYRCC	1 cut(s)	452
BssECI	CCNNGG	2 cut(s)	190, 330
BssMI	GATC	2 cut(s)	237, 266
BssT1I	CCWWGG	1 cut(s)	190
Bst2UI	CCWGG	2 cut(s)	305, 332
BstC8I	GCNNGC	2 cut(s)	357, 498
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	44, 122
BstKTI	GATC	2 cut(s)	240, 269
BstMBI	GATC	2 cut(s)	237, 266
BstNI	CCWGG	2 cut(s)	305, 332
BstSCI	CCNGG	2 cut(s)	303, 330
BstSFI	CTRYAG	1 cut(s)	514
BstV1I	GCAGC	1 cut(s)	16
BstV2I	GAAGAC	1 cut(s)	478
BstXI	CCANNNNNNTGG	2 cut(s)	338, 439
BsuI	GTATCC	1 cut(s)	78
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	2 cut(s)	44, 122
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	357, 498
Csp6I	GTAC	2 cut(s)	110, 453
CviAII	CATG	4 cut(s)	191, 433, 446, 521
CviJI	RGCY	4 cut(s)	7, 107, 378, 398
CviKI_1	RGCY	4 cut(s)	7, 107, 378, 398
CviQI	GTAC	2 cut(s)	110, 453
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	2 cut(s)	239, 268
DpnII	GATC	2 cut(s)	237, 266
DraI	TTTAAA	1 cut(s)	46
EciI	GGCGGA	1 cut(s)	290
Eco130I	CCWWGG	1 cut(s)	190
EcoRII	CCWGG	2 cut(s)	303, 330
EcoT14I	CCWWGG	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	190
FaeI	CATG	4 cut(s)	194, 436, 449, 524
FatI	CATG	4 cut(s)	190, 432, 445, 520
FauI	CCCGC	1 cut(s)	517
FauNDI	CATATG	1 cut(s)	73
FblI	GTMKAC	2 cut(s)	156, 207
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	2 cut(s)	51, 129
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	194, 436, 449, 524
HincII	GTYRAC	2 cut(s)	208, 477
HindII	GTYRAC	2 cut(s)	208, 477
HinfI	GANTC	2 cut(s)	292, 392
HpaI	GTTAAC	1 cut(s)	477
HphI	GGTGA	1 cut(s)	38
Hpy166II	GTNNAC	4 cut(s)	91, 157, 208, 477
Hpy188I	TCNGA	2 cut(s)	83, 237
Hpy188III	TCNNGA	1 cut(s)	490
Hpy8I	GTNNAC	4 cut(s)	91, 157, 208, 477
HpyAV	CCTTC	1 cut(s)	469
HpyCH4V	TGCA	2 cut(s)	4, 516
HpyF3I	CTNAG	1 cut(s)	234
Hsp92II	CATG	4 cut(s)	194, 436, 449, 524
KpnI	GGTACC	1 cut(s)	456
KspAI	GTTAAC	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	237, 266
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	19, 88, 483
MalI	GATC	2 cut(s)	239, 268
MboI	GATC	2 cut(s)	237, 266
MboII	GAAGA	2 cut(s)	287, 478
MluCI	AATT	4 cut(s)	171, 181, 213, 406
MlyI	GAGTC	1 cut(s)	401
MnlI	CCTC	4 cut(s)	107, 243, 464, 466
MroXI	GAANNNNTTC	2 cut(s)	55, 125
MseI	TTAA	4 cut(s)	45, 212, 476, 532
MslI	CAYNNNNRTG	1 cut(s)	431
MspR9I	CCNGG	2 cut(s)	305, 332
MvaI	CCWGG	2 cut(s)	305, 332
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	2 cut(s)	237, 266
NlaIII	CATG	4 cut(s)	194, 436, 449, 524
NlaIV	GGNNCC	1 cut(s)	454
PdmI	GAANNNNTTC	2 cut(s)	55, 125
PfeI	GAWTC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
PsiI	TTATAA	1 cut(s)	416
Psp6I	CCWGG	2 cut(s)	303, 330
PspGI	CCWGG	2 cut(s)	303, 330
PspN4I	GGNNCC	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	518
RsaI	GTAC	2 cut(s)	111, 454
RsaNI	GTAC	2 cut(s)	110, 453
RseI	CAYNNNNRTG	1 cut(s)	431
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	4 cut(s)	45, 212, 476, 532
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	2 cut(s)	237, 266
SchI	GAGTC	1 cut(s)	401
ScrFI	CCNGG	2 cut(s)	305, 332
SetI	ASST	6 cut(s)	9, 56, 109, 336, 400, 458
SfaNI	GCATC	3 cut(s)	19, 88, 483
SfcI	CTRYAG	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	431
Sse9I	AATT	4 cut(s)	171, 181, 213, 406
SsiI	CCGC	2 cut(s)	301, 524
SspI	AATATT	2 cut(s)	16, 324
StyD4I	CCNGG	2 cut(s)	303, 330
StyI	CCWWGG	1 cut(s)	190
TaqI	TCGA	4 cut(s)	207, 274, 390, 489
TasI	AATT	4 cut(s)	171, 181, 213, 406
TfiI	GAWTC	1 cut(s)	292
Tru1I	TTAA	4 cut(s)	45, 212, 476, 532
Tru9I	TTAA	4 cut(s)	45, 212, 476, 532
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	1 cut(s)	433
XapI	RAATTY	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	156, 207
XmnI	GAANNNNTTC	2 cut(s)	55, 125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.