Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

321856 .. 327515

Gene Structure 5660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGTGTGGGATATTTGCGTACCTGAATTACAACGTGAATCGAGAGAGGAGTTATATTCTTCAGGTGCTATTCAATGGCCTCCGGCGATTGGAGTACCGGGGATACGATTCCGCCGGAATTTCGATCGATCATTCCTCCTCTGATCCCAAAACCTCCTCTCTCCCTCCCTCTCTCGTTTTTCGCCAGGAGGGAAACATCGAGTCGCTCGTCAAATCCGTCTACCAAGATGTGGCTGAAACAGACCTAAATTTGAAGCAATGTTTCTCTCACCATGCTGGAATAGCACATACCCGGTGGGCCACTCATGGAGAGCCCGCTCCAAGGAACAGCCACCCTCAGAGCTCTGATCCTGGAAATGAATTTTTGGTCGTTCACAATGGAGTTATTACTAATTACGAGGCCTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCTGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCGTTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGACATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTGGTTCATCTTAAGGATGGACACGTGTCAATCCTAAAGTTTGATAAAGAAAAGCATGGTGGCCTTTCAAAAGTTGCATCAGTACAACGAGCATTGTCCATTCTTGAGATGGAGGTTGAACAAATAAATAAAGGAAATTTTGAACACTACATGCAGAAAGAAATTCATGAGCAGCCTGAATCTCTAACTACCACAATGAGGGGTAGGCTTTTACGTGGTGGTTCCTGCAAAGCCAAGACTGTTCTCCTTGGCGGACTGAAGGACCACCTTAAAACAATTAGGCGAAGCAGGCGAATTGTTTTCATTGGCTGTGGTACAAGCTACAATGCTGCTTTAGCTGCGAGACCTATCTTGGAAGAACTTTCAGGTATCCCTGTTACAATGGAAATTGCTAGTGATCTGTTGGATCGGCAAGGACCTATTTACAGAGAAGATACAGCTGTGTTTGTCAGTCAATCTGGTGAAACAGCAGATACTTTGAGTGCATTGGAATATGCTTTAGAAAATGGTGCATTATGTGTTGGCATAACAAATACCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGGTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGGCTATGCTTGCCCTAGCAATTGGAGGTGACACAATTTCAAATCAAGCAAGAAGAGAGGCTATAATTGACGGTTTATTTGACCTGCCAAACAAAGTCAGAGAGGTCCTGAAGCTTGACCAGGTAATGAAGGATCTTGCAAAACAATTGATAGCAGAGCAATCACTTCTTGTTTTTGGGAGAGGATACAACTATGCATCGGCTTTGGAGGGTGCTTTGAAGGTAAAGGAAGTAGCACTCATGCATAGTGAAGGAATACTTGCCGGTGAAATGAAACATGGTCCTTTGGCTTTAGTTGATGAAAATCTCCCAACTTTTGTGATTGCTACCCGTGATGCTTGCTTCAGTAAGCAGCAATCAGTTATTCAGCAGCTTCATGCCCGCAAAGGTCGTCTGATTGTAATGTGTTCGAAAGGAGATGCTGCATCTGTTTGCCCTGCGGAATGGGAGTCTTGTCGAGTGATTGAAGTTCCTCAGCTTGAGGATTGTCTTCAACCTGTAGTTAATATAGTTCCCTTGCAGCTGCTAGCATACCATCTCACAGTTTTAAGAGGTTTTAATGTGGATCAGCCTCGGAATCTTGCAAAGAGTGTGACAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

684

Amino Acids

75.14

Weight (kDa)

6.37

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	89 - 195	1.5e-13	Glutamine amidotransferase domain
GATase_7	PF13537	108 - 196	2.4e-09	Glutamine amidotransferase domain
SIS	PF01380	362 - 490	2.1e-34	SIS domain
SIS	PF01380	533 - 666	9.3e-19	SIS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1542
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	5 cut(s)	111, 315, 1059, 1831, 1889
AclWI	GGATC	5 cut(s)	137, 341, 1221, 1590, 2022
AcsI	RAATTY	5 cut(s)	117, 247, 359, 943, 969
AcuI	CTGAAG	4 cut(s)	44, 1085, 1580, 1777
AcvI	CACGTG	1 cut(s)	832
AdeI	CACNNNGTG	1 cut(s)	1376
AfaI	GTAC	4 cut(s)	20, 95, 891, 1123
AfiI	CCNNNNNNNGG	4 cut(s)	88, 229, 321, 1005
AflII	CTTAAG	1 cut(s)	818
AflIII	ACRYGT	2 cut(s)	829, 831
AjnI	CCWGG	3 cut(s)	183, 349, 1569
AleI	CACNNNNGTG	1 cut(s)	1377
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	1144
AlwI	GGATC	5 cut(s)	137, 341, 1221, 1590, 2022
AoxI	GGCC	4 cut(s)	76, 297, 399, 868
ApeKI	GCWGC	8 cut(s)	979, 1136, 1145, 1801, 1819, 1871, 1969, 1972
ApoI	RAATTY	5 cut(s)	117, 247, 359, 943, 969
ArsI	GACNNNNNNTTYG	2 cut(s)	1511, 1543
Asp700I	GAANNNNTTC	2 cut(s)	462, 810
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	5 cut(s)	297, 1069, 1223, 1555, 1730
AsuC2I	CCSGG	2 cut(s)	98, 292
AsuHPI	GGTGA	8 cut(s)	260, 524, 802, 815, 1280, 1459, 1490, 1727
AsuII	TTCGAA	1 cut(s)	1859
AsuNHI	GCTAGC	2 cut(s)	674, 1975
AvaII	GGWCC	4 cut(s)	1069, 1223, 1555, 1730
BaeGI	GKGCMC	1 cut(s)	413
BaeI	ACNNNNGTAYC	2 cut(s)	1233, 1266
BanII	GRGCYC	2 cut(s)	315, 344
BbrPI	CACGTG	1 cut(s)	832
BbsI	GAAGAC	1 cut(s)	1931
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	1923
BbvI	GCAGC	8 cut(s)	991, 1123, 1132, 1813, 1831, 1858, 1959, 1981
BccI	CCATC	5 cut(s)	794, 818, 910, 1444, 1992
BceAI	ACGGC	1 cut(s)	746
BciT130I	CCWGG	3 cut(s)	185, 351, 1571
BciVI	GTATCC	3 cut(s)	95, 1187, 1628
BcnI	CCSGG	2 cut(s)	98, 292
BcoDI	GTCTC	1 cut(s)	1144
BfaI	CTAG	5 cut(s)	416, 675, 1200, 1466, 1976
BfmI	CTRYAG	1 cut(s)	1947
BfrI	CTTAAG	1 cut(s)	818
BfuAI	ACCTGC	1 cut(s)	1542
BfuI	GTATCC	3 cut(s)	95, 1187, 1628
BisI	GCNGC	8 cut(s)	980, 1137, 1146, 1802, 1820, 1872, 1970, 1973
BlsI	GCNGC	8 cut(s)	981, 1138, 1147, 1803, 1821, 1873, 1971, 1974
Bme1390I	CCNGG	5 cut(s)	98, 185, 292, 351, 1571
Bme18I	GGWCC	4 cut(s)	1069, 1223, 1555, 1730
BmgT120I	GGNCC	5 cut(s)	297, 1069, 1223, 1555, 1730
BmiI	GGNNCC	2 cut(s)	571, 1030
BmrFI	CCNGG	5 cut(s)	98, 185, 292, 351, 1571
BmrI	ACTGGG	1 cut(s)	2044
BmsI	GCATC	7 cut(s)	568, 742, 893, 1655, 1774, 1858, 1883
BmtI	GCTAGC	2 cut(s)	678, 1979
BmuI	ACTGGG	1 cut(s)	2044
BoxI	GACNNNNGTC	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	1931
Bpu10I	CCTNAGC	1 cut(s)	1923
Bpu14I	TTCGAA	1 cut(s)	1859
BpuEI	CTTGAG	2 cut(s)	932, 1949
BpuMI	CCSGG	2 cut(s)	98, 292
Bsa29I	ATCGAT	1 cut(s)	126
BsaAI	YACGTR	2 cut(s)	832, 1022
BsaBI	GATNNNNATC	1 cut(s)	1752
BsaI	GGTCTC	1 cut(s)	1144
BsaJI	CCNNGG	6 cut(s)	97, 320, 646, 1054, 1422, 2021
Bsc4I	CCNNNNNNNGG	4 cut(s)	88, 229, 321, 1005
Bse118I	RCCGGY	1 cut(s)	1712
Bse1I	ACTGG	2 cut(s)	747, 2050
Bse3DI	GCAATG	2 cut(s)	263, 685
Bse8I	GATNNNNATC	1 cut(s)	1752
BseBI	CCWGG	3 cut(s)	185, 351, 1571
BseCI	ATCGAT	1 cut(s)	126
BseDI	CCNNGG	6 cut(s)	97, 320, 646, 1054, 1422, 2021
BseGI	GGATG	3 cut(s)	724, 805, 829
BseJI	GATNNNNATC	1 cut(s)	1752
BseLI	CCNNNNNNNGG	4 cut(s)	88, 229, 321, 1005
BseMI	GCAATG	2 cut(s)	263, 685
BseMII	CTCAG	3 cut(s)	350, 1392, 1937
BseNI	ACTGG	2 cut(s)	747, 2050
BseRI	GAGGAG	3 cut(s)	61, 127, 145
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	8 cut(s)	991, 1123, 1132, 1813, 1831, 1858, 1959, 1981
Bsh1285I	CGRYCG	1 cut(s)	126
BshFI	GGCC	4 cut(s)	78, 299, 401, 870
BshVI	ATCGAT	1 cut(s)	126
BsiEI	CGRYCG	1 cut(s)	126
BsiHKAI	GWGCWC	1 cut(s)	344
BsiSI	CCGG	5 cut(s)	82, 97, 114, 292, 1713
BslI	CCNNNNNNNGG	4 cut(s)	88, 229, 321, 1005
BsmAI	GTCTC	1 cut(s)	1144
BsnI	GGCC	4 cut(s)	78, 299, 401, 870
Bso31I	GGTCTC	1 cut(s)	1144
Bsp119I	TTCGAA	1 cut(s)	1859
Bsp1286I	GDGCHC	3 cut(s)	315, 344, 413
Bsp143I	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
BspACI	CCGC	5 cut(s)	111, 315, 1059, 1831, 1889
BspANI	GGCC	4 cut(s)	78, 299, 401, 870
BspCNI	CTCAG	3 cut(s)	349, 1393, 1936
BspDI	ATCGAT	1 cut(s)	126
BspHI	TCATGA	2 cut(s)	694, 973
BspLI	GGNNCC	2 cut(s)	571, 1030
BspMI	ACCTGC	1 cut(s)	1542
BspOI	GCTAGC	2 cut(s)	678, 1979
BspPI	GGATC	5 cut(s)	137, 341, 1221, 1590, 2022
BspT104I	TTCGAA	1 cut(s)	1859
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	1144
BsrBI	CCGCTC	1 cut(s)	317
BsrDI	GCAATG	2 cut(s)	263, 685
BsrFI	RCCGGY	1 cut(s)	1712
BsrI	ACTGG	2 cut(s)	747, 2050
BssAI	RCCGGY	1 cut(s)	1712
BssECI	CCNNGG	6 cut(s)	97, 320, 646, 1054, 1422, 2021
BssMI	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
BssT1I	CCWWGG	4 cut(s)	320, 646, 1054, 1422
Bst2UI	CCWGG	3 cut(s)	185, 351, 1571
Bst4CI	ACNGT	5 cut(s)	1048, 1345, 1376, 1523, 1993
Bst6I	CTCTTC	2 cut(s)	743, 1498
BstAFI	CTTAAG	1 cut(s)	818
BstBAI	YACGTR	2 cut(s)	832, 1022
BstBI	TTCGAA	1 cut(s)	1859
BstDEI	CTNAG	3 cut(s)	336, 1401, 1923
BstEII	GGTNACC	1 cut(s)	512
BstF5I	GGATG	3 cut(s)	724, 805, 829
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	8 cut(s)	126, 130, 145, 349, 1207, 1216, 1585, 2017
BstMAI	GTCTC	1 cut(s)	1144
BstMBI	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
BstMCI	CGRYCG	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	281, 1096, 1142, 1145, 1460
BstNI	CCWGG	3 cut(s)	185, 351, 1571
BstNSI	RCATGY	1 cut(s)	961
BstPAI	GACNNNNGTC	1 cut(s)	832
BstPI	GGTNACC	1 cut(s)	512
BstSCI	CCNGG	5 cut(s)	96, 183, 290, 349, 1569
BstSFI	CTRYAG	1 cut(s)	1947
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	8 cut(s)	991, 1123, 1132, 1813, 1831, 1858, 1959, 1981
BstV2I	GAAGAC	1 cut(s)	1931
BstX2I	RGATCY	1 cut(s)	1582
BstYI	RGATCY	1 cut(s)	1582
Bsu15I	ATCGAT	1 cut(s)	126
BsuI	GTATCC	3 cut(s)	95, 1187, 1628
BsuRI	GGCC	4 cut(s)	78, 299, 401, 870
BsuTUI	ATCGAT	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	724, 805, 829
BtsIMutI	CAGTG	2 cut(s)	754, 1372
BveI	ACCTGC	1 cut(s)	1542
CciI	TCATGA	2 cut(s)	694, 973
CfoI	GCGC	1 cut(s)	580
Cfr10I	RCCGGY	1 cut(s)	1712
Cfr13I	GGNCC	5 cut(s)	297, 1069, 1223, 1555, 1730
ClaI	ATCGAT	1 cut(s)	126
CsiI	ACCWGGT	1 cut(s)	1569
Csp6I	GTAC	4 cut(s)	19, 94, 890, 1122
CviQI	GTAC	4 cut(s)	19, 94, 890, 1122
DdeI	CTNAG	3 cut(s)	336, 1401, 1923
DpnI	GATC	8 cut(s)	125, 129, 144, 348, 1206, 1215, 1584, 2016
DpnII	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
DraI	TTTAAA	1 cut(s)	589
DraIII	CACNNNGTG	1 cut(s)	1376
Eam1104I	CTCTTC	2 cut(s)	743, 1498
EarI	CTCTTC	2 cut(s)	743, 1498
EciI	GGCGGA	2 cut(s)	100, 1074
Ecl136II	GAGCTC	1 cut(s)	342
Eco130I	CCWWGG	4 cut(s)	320, 646, 1054, 1422
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	2 cut(s)	315, 344
Eco31I	GGTCTC	1 cut(s)	1144
Eco47I	GGWCC	4 cut(s)	1069, 1223, 1555, 1730
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	4 cut(s)	44, 1085, 1580, 1777
Eco72I	CACGTG	1 cut(s)	832
Eco91I	GGTNACC	1 cut(s)	512
EcoICRI	GAGCTC	1 cut(s)	342
EcoO109I	RGGNCCY	2 cut(s)	1223, 1555
EcoO65I	GGTNACC	1 cut(s)	512
EcoRII	CCWGG	3 cut(s)	183, 349, 1569
EcoT14I	CCWWGG	4 cut(s)	320, 646, 1054, 1422
EcoT22I	ATGCAT	2 cut(s)	1648, 1695
EcoT38I	GRGCYC	2 cut(s)	315, 344
ErhI	CCWWGG	4 cut(s)	320, 646, 1054, 1422
FalI	AAGNNNNNCTT	2 cut(s)	1692, 1724
FauI	CCCGC	2 cut(s)	322, 1838
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	8 cut(s)	980, 1137, 1146, 1802, 1820, 1872, 1970, 1973
FokI	GGATG	3 cut(s)	711, 812, 836
FriOI	GRGCYC	2 cut(s)	315, 344
Fsp4HI	GCNGC	8 cut(s)	980, 1137, 1146, 1802, 1820, 1872, 1970, 1973
FspBI	CTAG	5 cut(s)	416, 675, 1200, 1466, 1976
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	8 cut(s)	980, 1137, 1146, 1802, 1820, 1872, 1970, 1973
HaeIII	GGCC	4 cut(s)	78, 299, 401, 870
HapII	CCGG	5 cut(s)	82, 97, 114, 292, 1713
HhaI	GCGC	1 cut(s)	580
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	2 cut(s)	470, 1562
HinfI	GANTC	6 cut(s)	37, 107, 200, 986, 1898, 2026
HpaII	CCGG	5 cut(s)	82, 97, 114, 292, 1713
HphI	GGTGA	8 cut(s)	260, 524, 802, 815, 1280, 1459, 1490, 1727
Hpy166II	GTNNAC	4 cut(s)	220, 373, 626, 722
Hpy188I	TCNGA	7 cut(s)	142, 339, 346, 445, 1550, 1845, 2025
Hpy188III	TCNNGA	6 cut(s)	41, 563, 695, 911, 974, 1558
Hpy8I	GTNNAC	4 cut(s)	220, 373, 626, 722
HpyAV	CCTTC	7 cut(s)	497, 503, 560, 1060, 1573, 1663, 1694
HpyCH4III	ACNGT	5 cut(s)	1048, 1345, 1376, 1523, 1993
HpyCH4IV	ACGT	4 cut(s)	33, 628, 831, 1021
HpyF10VI	GCNNNNNNNGC	5 cut(s)	281, 1096, 1142, 1145, 1460
HpyF3I	CTNAG	3 cut(s)	336, 1401, 1923
HpySE526I	ACGT	4 cut(s)	33, 628, 831, 1021
HspAI	GCGC	1 cut(s)	578
Kzo9I	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
LmnI	GCTCC	3 cut(s)	322, 569, 648
Lsp1109I	GCAGC	8 cut(s)	991, 1123, 1132, 1813, 1831, 1858, 1959, 1981
LweI	GCATC	7 cut(s)	568, 742, 893, 1655, 1774, 1858, 1883
MabI	ACCWGGT	1 cut(s)	1569
MaeI	CTAG	5 cut(s)	416, 675, 1200, 1466, 1976
MaeII	ACGT	4 cut(s)	33, 628, 831, 1021
MaeIII	GTNAC	5 cut(s)	512, 1183, 1364, 1478, 2041
MalI	GATC	8 cut(s)	125, 129, 144, 348, 1206, 1215, 1584, 2016
MbiI	CCGCTC	1 cut(s)	317
MboI	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
MboII	GAAGA	6 cut(s)	50, 730, 1175, 1250, 1515, 1931
MfeI	CAATTG	2 cut(s)	1470, 1595
MflI	RGATCY	1 cut(s)	1582
MhlI	GDGCHC	3 cut(s)	315, 344, 413
MlyI	GAGTC	2 cut(s)	209, 1907
MmeI	TCCRAC	1 cut(s)	1191
Mph1103I	ATGCAT	2 cut(s)	1648, 1695
MroXI	GAANNNNTTC	2 cut(s)	462, 810
MseI	TTAA	8 cut(s)	404, 588, 663, 819, 1077, 1953, 1997, 2007
MslI	CAYNNNNRTG	2 cut(s)	1377, 1389
MspA1I	CMGCKG	2 cut(s)	1247, 1972
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	5 cut(s)	82, 97, 114, 292, 1713
MspR9I	CCNGG	5 cut(s)	98, 185, 292, 351, 1571
MunI	CAATTG	2 cut(s)	1470, 1595
MvaI	CCWGG	3 cut(s)	185, 351, 1571
MwoI	GCNNNNNNNGC	5 cut(s)	281, 1096, 1142, 1145, 1460
NciI	CCSGG	2 cut(s)	98, 292
NdeII	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
NheI	GCTAGC	2 cut(s)	674, 1975
NlaIV	GGNNCC	2 cut(s)	571, 1030
NmuCI	GTSAC	3 cut(s)	512, 1478, 2041
NsiI	ATGCAT	2 cut(s)	1648, 1695
NspI	RCATGY	1 cut(s)	961
NspV	TTCGAA	1 cut(s)	1859
OliI	CACNNNNGTG	1 cut(s)	1377
PagI	TCATGA	2 cut(s)	694, 973
PceI	AGGCCT	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	2 cut(s)	204, 213
PdmI	GAANNNNTTC	2 cut(s)	462, 810
PfeI	GAWTC	4 cut(s)	37, 107, 986, 2026
PflMI	CCANNNNNTGG	1 cut(s)	229
PfoI	TCCNGGA	1 cut(s)	349
PkrI	GCNGC	8 cut(s)	981, 1138, 1147, 1803, 1821, 1873, 1971, 1974
Ple19I	CGATCG	1 cut(s)	126
PleI	GAGTC	2 cut(s)	208, 1906
PmaCI	CACGTG	1 cut(s)	832
PmlI	CACGTG	1 cut(s)	832
PpsI	GAGTC	2 cut(s)	208, 1906
Ppu21I	YACGTR	2 cut(s)	832, 1022
PpuMI	RGGWCCY	2 cut(s)	1223, 1555
PshAI	GACNNNNGTC	1 cut(s)	832
Psp124BI	GAGCTC	1 cut(s)	344
Psp5II	RGGWCCY	2 cut(s)	1223, 1555
Psp6I	CCWGG	3 cut(s)	183, 349, 1569
PspCI	CACGTG	1 cut(s)	832
PspEI	GGTNACC	1 cut(s)	512
PspGI	CCWGG	3 cut(s)	183, 349, 1569
PspN4I	GGNNCC	2 cut(s)	571, 1030
PspPI	GGNCC	5 cut(s)	297, 1069, 1223, 1555, 1730
PspPPI	RGGWCCY	2 cut(s)	1223, 1555
PsuI	RGATCY	1 cut(s)	1582
PvuI	CGATCG	1 cut(s)	126
PvuII	CAGCTG	2 cut(s)	1247, 1972
RsaI	GTAC	4 cut(s)	20, 95, 891, 1123
RsaNI	GTAC	4 cut(s)	19, 94, 890, 1122
RseI	CAYNNNNRTG	2 cut(s)	1377, 1389
SacI	GAGCTC	1 cut(s)	344
SaqAI	TTAA	8 cut(s)	404, 588, 663, 819, 1077, 1953, 1997, 2007
SatI	GCNGC	8 cut(s)	980, 1137, 1146, 1802, 1820, 1872, 1970, 1973
Sau3AI	GATC	8 cut(s)	123, 127, 142, 346, 1204, 1213, 1582, 2014
Sau96I	GGNCC	5 cut(s)	297, 1069, 1223, 1555, 1730
SchI	GAGTC	2 cut(s)	209, 1907
ScrFI	CCNGG	5 cut(s)	98, 185, 292, 351, 1571
SduI	GDGCHC	3 cut(s)	315, 344, 413
SexAI	ACCWGGT	1 cut(s)	1569
SfaNI	GCATC	7 cut(s)	568, 742, 893, 1655, 1774, 1858, 1883
SfcI	CTRYAG	1 cut(s)	1947
SfuI	TTCGAA	1 cut(s)	1859
SinI	GGWCC	4 cut(s)	1069, 1223, 1555, 1730
SmiMI	CAYNNNNRTG	2 cut(s)	1377, 1389
SmlI	CTYRAG	3 cut(s)	818, 911, 1928
SmoI	CTYRAG	3 cut(s)	818, 911, 1928
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	5 cut(s)	111, 315, 1059, 1831, 1889
SspMI	CTAG	5 cut(s)	416, 675, 1200, 1466, 1976
SstI	GAGCTC	1 cut(s)	344
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	5 cut(s)	96, 183, 290, 349, 1569
StyI	CCWWGG	4 cut(s)	320, 646, 1054, 1422
TaaI	ACNGT	5 cut(s)	1048, 1345, 1376, 1523, 1993
TaiI	ACGT	4 cut(s)	36, 631, 834, 1024
TaqI	TCGA	6 cut(s)	40, 122, 126, 198, 1859, 1906
TatI	WGTACW	1 cut(s)	889
TfiI	GAWTC	4 cut(s)	37, 107, 986, 2026
Tru1I	TTAA	8 cut(s)	404, 588, 663, 819, 1077, 1953, 1997, 2007
Tru9I	TTAA	8 cut(s)	404, 588, 663, 819, 1077, 1953, 1997, 2007
TscAI	CASTG	2 cut(s)	754, 1379
TseFI	GTSAC	3 cut(s)	512, 1478, 2041
TseI	GCWGC	8 cut(s)	979, 1136, 1145, 1801, 1819, 1871, 1969, 1972
Tsp45I	GTSAC	3 cut(s)	512, 1478, 2041
TspGWI	ACGGA	2 cut(s)	205, 627
TspRI	CASTG	2 cut(s)	754, 1379
Van91I	CCANNNNNTGG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	818
VpaK11BI	GGWCC	4 cut(s)	1069, 1223, 1555, 1730
XapI	RAATTY	5 cut(s)	117, 247, 359, 943, 969
XceI	RCATGY	1 cut(s)	961
XcmI	CCANNNNNNNNNTGG	2 cut(s)	784, 913
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	462, 810
XspI	CTAG	5 cut(s)	416, 675, 1200, 1466, 1976
Zsp2I	ATGCAT	2 cut(s)	1648, 1695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.