cyclic nucleotide-gated ion channel
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g12600 FvH4_4g12601 |
| rosa_chinensis | RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711 |
| rosa_laevigata | RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693 |
| rosa_multiflora | Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010 |
| rosa_roxburghii | Rroxscaffold_1G00066450 Rroxscaffold_6G00404920 |
| rosa_rugosa | Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500 |
| rosa_samantha | Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700 |
| rosa_wichuraiana | Rw3G018960 Rw3G018970 Rw3G019000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 138, 189 |
| AciI | CCGC | 1 cut(s) | 273 |
| AfaI | GTAC | 1 cut(s) | 93 |
| AjnI | CCWGG | 1 cut(s) | 459 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 469, 501 |
| AluBI | AGCT | 1 cut(s) | 89 |
| AluI | AGCT | 1 cut(s) | 89 |
| ApeKI | GCWGC | 1 cut(s) | 344 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 37, 107 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| BbsI | GAAGAC | 1 cut(s) | 227 |
| BbvI | GCAGC | 1 cut(s) | 331 |
| BccI | CCATC | 2 cut(s) | 15, 93 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 228, 262 |
| BciT130I | CCWGG | 1 cut(s) | 461 |
| BciVI | GTATCC | 2 cut(s) | 60, 471 |
| BfaI | CTAG | 1 cut(s) | 395 |
| BfmI | CTRYAG | 1 cut(s) | 263 |
| BfuI | GTATCC | 2 cut(s) | 60, 471 |
| BisI | GCNGC | 1 cut(s) | 345 |
| BlsI | GCNGC | 1 cut(s) | 346 |
| Bme1390I | CCNGG | 1 cut(s) | 461 |
| BmrFI | CCNGG | 1 cut(s) | 461 |
| BmsI | GCATC | 2 cut(s) | 70, 232 |
| BpiI | GAAGAC | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 460, 473 |
| Bse3DI | GCAATG | 1 cut(s) | 301 |
| BseBI | CCWGG | 1 cut(s) | 461 |
| BseDI | CCNNGG | 3 cut(s) | 172, 460, 473 |
| BseGI | GGATG | 2 cut(s) | 26, 104 |
| BseMI | GCAATG | 1 cut(s) | 301 |
| BseMII | CTCAG | 2 cut(s) | 230, 496 |
| BseRI | GAGGAG | 1 cut(s) | 353 |
| BseXI | GCAGC | 1 cut(s) | 331 |
| BsmI | GAATGC | 1 cut(s) | 507 |
| Bsp19I | CCATGG | 2 cut(s) | 172, 473 |
| BspACI | CCGC | 1 cut(s) | 273 |
| BspCNI | CTCAG | 2 cut(s) | 229, 495 |
| BspHI | TCATGA | 1 cut(s) | 490 |
| BspMAI | CTGCAG | 1 cut(s) | 267 |
| BsrDI | GCAATG | 1 cut(s) | 301 |
| BssECI | CCNNGG | 3 cut(s) | 172, 460, 473 |
| BssT1I | CCWWGG | 2 cut(s) | 172, 473 |
| Bst2UI | CCWGG | 1 cut(s) | 461 |
| Bst4CI | ACNGT | 1 cut(s) | 447 |
| BstC8I | GCNNGC | 1 cut(s) | 247 |
| BstDEI | CTNAG | 2 cut(s) | 216, 482 |
| BstDSI | CCRYGG | 2 cut(s) | 172, 473 |
| BstF5I | GGATG | 2 cut(s) | 26, 104 |
| BstNI | CCWGG | 1 cut(s) | 461 |
| BstSCI | CCNGG | 1 cut(s) | 459 |
| BstSFI | CTRYAG | 1 cut(s) | 263 |
| BstV1I | GCAGC | 1 cut(s) | 331 |
| BstV2I | GAAGAC | 1 cut(s) | 227 |
| BsuI | GTATCC | 2 cut(s) | 60, 471 |
| BtgI | CCRYGG | 2 cut(s) | 172, 473 |
| BtsCI | GGATG | 2 cut(s) | 26, 104 |
| BtsIMutI | CAGTG | 2 cut(s) | 443, 518 |
| Cac8I | GCNNGC | 1 cut(s) | 247 |
| CciI | TCATGA | 1 cut(s) | 490 |
| Csp6I | GTAC | 1 cut(s) | 92 |
| CviAII | CATG | 6 cut(s) | 173, 270, 424, 474, 491, 504 |
| CviJI | RGCY | 3 cut(s) | 89, 344, 466 |
| CviKI_1 | RGCY | 3 cut(s) | 89, 344, 466 |
| CviQI | GTAC | 1 cut(s) | 92 |
| DdeI | CTNAG | 2 cut(s) | 216, 482 |
| DraI | TTTAAA | 1 cut(s) | 28 |
| Eco130I | CCWWGG | 2 cut(s) | 172, 473 |
| EcoRII | CCWGG | 1 cut(s) | 459 |
| EcoT14I | CCWWGG | 2 cut(s) | 172, 473 |
| EcoT22I | ATGCAT | 1 cut(s) | 509 |
| ErhI | CCWWGG | 2 cut(s) | 172, 473 |
| FaeI | CATG | 6 cut(s) | 176, 273, 427, 477, 494, 507 |
| FatI | CATG | 6 cut(s) | 172, 269, 423, 473, 490, 503 |
| FauI | CCCGC | 1 cut(s) | 266 |
| FauNDI | CATATG | 1 cut(s) | 55 |
| FblI | GTMKAC | 2 cut(s) | 138, 189 |
| Fnu4HI | GCNGC | 1 cut(s) | 345 |
| FokI | GGATG | 2 cut(s) | 33, 111 |
| Fsp4HI | GCNGC | 1 cut(s) | 345 |
| FspBI | CTAG | 1 cut(s) | 395 |
| GluI | GCNGC | 1 cut(s) | 345 |
| Hin1II | CATG | 6 cut(s) | 176, 273, 427, 477, 494, 507 |
| HincII | GTYRAC | 3 cut(s) | 190, 226, 318 |
| HindII | GTYRAC | 3 cut(s) | 190, 226, 318 |
| HinfI | GANTC | 3 cut(s) | 314, 456, 494 |
| HpaI | GTTAAC | 1 cut(s) | 226 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 5 cut(s) | 73, 139, 190, 226, 318 |
| Hpy188I | TCNGA | 2 cut(s) | 65, 219 |
| Hpy188III | TCNNGA | 4 cut(s) | 239, 311, 362, 491 |
| Hpy8I | GTNNAC | 5 cut(s) | 73, 139, 190, 226, 318 |
| HpyAV | CCTTC | 1 cut(s) | 359 |
| HpyCH4III | ACNGT | 1 cut(s) | 447 |
| HpyCH4V | TGCA | 3 cut(s) | 265, 294, 507 |
| HpyF3I | CTNAG | 2 cut(s) | 216, 482 |
| Hsp92II | CATG | 6 cut(s) | 176, 273, 427, 477, 494, 507 |
| KspAI | GTTAAC | 1 cut(s) | 226 |
| LpnPI | CCDG | 8 cut(s) | 49, 90, 259, 324, 333, 347, 446, 473 |
| Lsp1109I | GCAGC | 1 cut(s) | 331 |
| LweI | GCATC | 2 cut(s) | 70, 232 |
| MaeI | CTAG | 1 cut(s) | 395 |
| MboII | GAAGA | 2 cut(s) | 227, 461 |
| MluCI | AATT | 3 cut(s) | 153, 163, 195 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MnlI | CCTC | 5 cut(s) | 89, 213, 225, 331, 334 |
| Mph1103I | ATGCAT | 1 cut(s) | 509 |
| MroXI | GAANNNNTTC | 2 cut(s) | 37, 107 |
| MseI | TTAA | 4 cut(s) | 27, 225, 281, 357 |
| MslI | CAYNNNNRTG | 1 cut(s) | 522 |
| MspR9I | CCNGG | 1 cut(s) | 461 |
| Mva1269I | GAATGC | 1 cut(s) | 507 |
| MvaI | CCWGG | 1 cut(s) | 461 |
| NcoI | CCATGG | 2 cut(s) | 172, 473 |
| NdeI | CATATG | 1 cut(s) | 55 |
| NlaIII | CATG | 6 cut(s) | 176, 273, 427, 477, 494, 507 |
| NsiI | ATGCAT | 1 cut(s) | 509 |
| PagI | TCATGA | 1 cut(s) | 490 |
| PctI | GAATGC | 1 cut(s) | 507 |
| PdmI | GAANNNNTTC | 2 cut(s) | 37, 107 |
| PfeI | GAWTC | 2 cut(s) | 456, 494 |
| PkrI | GCNGC | 1 cut(s) | 346 |
| PleI | GAGTC | 1 cut(s) | 322 |
| PpsI | GAGTC | 1 cut(s) | 322 |
| Psp6I | CCWGG | 1 cut(s) | 459 |
| PspGI | CCWGG | 1 cut(s) | 459 |
| PstI | CTGCAG | 1 cut(s) | 267 |
| RsaI | GTAC | 1 cut(s) | 93 |
| RsaNI | GTAC | 1 cut(s) | 92 |
| RseI | CAYNNNNRTG | 1 cut(s) | 522 |
| SalI | GTCGAC | 1 cut(s) | 188 |
| SaqAI | TTAA | 4 cut(s) | 27, 225, 281, 357 |
| SatI | GCNGC | 1 cut(s) | 345 |
| SchI | GAGTC | 1 cut(s) | 323 |
| ScrFI | CCNGG | 1 cut(s) | 461 |
| SetI | ASST | 2 cut(s) | 38, 91 |
| SfaNI | GCATC | 2 cut(s) | 70, 232 |
| SfcI | CTRYAG | 1 cut(s) | 263 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 522 |
| Sse9I | AATT | 3 cut(s) | 153, 163, 195 |
| SsiI | CCGC | 1 cut(s) | 273 |
| SspI | AATATT | 1 cut(s) | 434 |
| SspMI | CTAG | 1 cut(s) | 395 |
| StyD4I | CCNGG | 1 cut(s) | 459 |
| StyI | CCWWGG | 2 cut(s) | 172, 473 |
| TaaI | ACNGT | 1 cut(s) | 447 |
| TaqI | TCGA | 2 cut(s) | 189, 238 |
| TasI | AATT | 3 cut(s) | 153, 163, 195 |
| TfiI | GAWTC | 2 cut(s) | 456, 494 |
| Tru1I | TTAA | 4 cut(s) | 27, 225, 281, 357 |
| Tru9I | TTAA | 4 cut(s) | 27, 225, 281, 357 |
| TscAI | CASTG | 2 cut(s) | 450, 518 |
| TseI | GCWGC | 1 cut(s) | 344 |
| TspRI | CASTG | 2 cut(s) | 450, 518 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 510 |
| XmiI | GTMKAC | 2 cut(s) | 138, 189 |
| XmnI | GAANNNNTTC | 2 cut(s) | 37, 107 |
| XspI | CTAG | 1 cut(s) | 395 |
| Zsp2I | ATGCAT | 1 cut(s) | 509 |