RLG00000031693

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003327
Physical Location & Seq
Reverse (-)
7465058 .. 7465656
599 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031693

Sequence Viewer

Length: 474 bp
ATGGGGCGACGACTCATCCTTGACCTCAATGTGAAGAAGATAATTAATTCCTCCTACCACTTGACTCTCACCCTTGAGAACACTGTGGAACACCAACTTCTTGTGGGATTGTTTGCTGATTTCAGAAACTGCAAAGTCCGCAATCTCTTCCAGATAGGGTTTGTTAATATTTTCGATAGTGCCCCAACCACCGTCGAACTGTCGCCGGAGTTGGTCAGCAGCGACAAAAGGGGAGAGGAGGAGGAGGAGGAGGAGGCAGTGACGCATCATCATGGTGATCGTACGTTGATTTTCTTCGTTCAAGATCGGCTTTGGAATGGAGAAGGTGGTGATGTAAGGAAAGAGATCGAGTTGTCGGTAGGTGGTGCAAAGGGTGCTGGCGTGATGGTTATTGCTCAATCACCTAGAAATCTAAGCCCAATGGGTACAATTTGTAACTCAGGTGGATCTAGGACTCTAGGTGCTGGATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.27

Weight (kDa)

5.52

Isoelectric Point (pI)

51.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AclWI GGATC 1 cut(s) 454
AfaI GTAC 2 cut(s) 283, 427
AgsI TTSAA 1 cut(s) 302
AlwI GGATC 1 cut(s) 454
AlwNI CAGNNNCTG 1 cut(s) 129
ApeKI GCWGC 1 cut(s) 219
AseI ATTAAT 1 cut(s) 45
AsuHPI GGTGA 4 cut(s) 61, 287, 341, 393
BaeGI GKGCMC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 231
BccI CCATC 1 cut(s) 379
BfaI CTAG 3 cut(s) 405, 450, 458
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmsI GCATC 1 cut(s) 274
BpuEI CTTGAG 1 cut(s) 95
BseGI GGATG 1 cut(s) 15
BseMII CTCAG 1 cut(s) 453
BseRI GAGGAG 6 cut(s) 251, 254, 257, 260, 263, 266
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 206
BsiWI CGTACG 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 184
Bsp143I GATC 4 cut(s) 277, 304, 345, 446
BspACI CCGC 1 cut(s) 139
BspCNI CTCAG 1 cut(s) 452
BspPI GGATC 1 cut(s) 454
BssMI GATC 4 cut(s) 277, 304, 345, 446
Bst4CI ACNGT 3 cut(s) 85, 193, 201
Bst6I CTCTTC 1 cut(s) 152
BstAPI GCANNNNNTGC 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 2 cut(s) 413, 439
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 4 cut(s) 280, 307, 348, 449
BstMBI GATC 4 cut(s) 277, 304, 345, 446
BstMWI GCNNNNNNNGC 2 cut(s) 138, 374
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 231
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 264
BtsIMutI CAGTG 2 cut(s) 81, 264
Cac8I GCNNGC 1 cut(s) 379
CaiI CAGNNNCTG 1 cut(s) 129
CseI GACGC 1 cut(s) 271
Csp6I GTAC 2 cut(s) 282, 426
CviAII CATG 1 cut(s) 272
CviJI RGCY 2 cut(s) 310, 417
CviKI_1 RGCY 2 cut(s) 310, 417
CviQI GTAC 2 cut(s) 282, 426
DdeI CTNAG 2 cut(s) 413, 439
DpnI GATC 4 cut(s) 279, 306, 347, 448
DpnII GATC 4 cut(s) 277, 304, 345, 446
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
FaeI CATG 1 cut(s) 275
FaiI YATR 1 cut(s) 273
FalI AAGNNNNNCTT 2 cut(s) 294, 326
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 2
Fsp4HI GCNGC 1 cut(s) 220
FspBI CTAG 3 cut(s) 405, 450, 458
GluI GCNGC 1 cut(s) 220
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 275
HinfI GANTC 3 cut(s) 12, 64, 454
HpaII CCGG 1 cut(s) 206
HphI GGTGA 4 cut(s) 61, 287, 341, 393
Hpy188I TCNGA 1 cut(s) 125
Hpy188III TCNNGA 2 cut(s) 151, 302
Hpy99I CGWCG 2 cut(s) 12, 197
HpyAV CCTTC 1 cut(s) 317
HpyCH4III ACNGT 3 cut(s) 85, 193, 201
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 132, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 374
HpyF3I CTNAG 2 cut(s) 413, 439
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 1 cut(s) 275
Kzo9I GATC 4 cut(s) 277, 304, 345, 446
LpnPI CCDG 5 cut(s) 164, 219, 363, 426, 450
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 274
MaeI CTAG 3 cut(s) 405, 450, 458
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 2 cut(s) 259, 434
MalI GATC 4 cut(s) 279, 306, 347, 448
MboI GATC 4 cut(s) 277, 304, 345, 446
MboII GAAGA 4 cut(s) 46, 49, 139, 286
MflI RGATCY 1 cut(s) 446
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 42, 46, 429
MlyI GAGTC 3 cut(s) 6, 58, 448
MnlI CCTC 9 cut(s) 35, 61, 229, 232, 235, 238, 241, 244, 247
MseI TTAA 2 cut(s) 45, 165
MslI CAYNNNNRTG 2 cut(s) 270, 273
MspI CCGG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 138, 374
NdeII GATC 4 cut(s) 277, 304, 345, 446
NlaIII CATG 1 cut(s) 275
NmuCI GTSAC 1 cut(s) 259
Pfl23II CGTACG 1 cut(s) 281
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 3 cut(s) 6, 58, 448
PpsI GAGTC 3 cut(s) 6, 58, 448
PshBI ATTAAT 1 cut(s) 45
PspLI CGTACG 1 cut(s) 281
PstNI CAGNNNCTG 1 cut(s) 129
PsuI RGATCY 1 cut(s) 446
RsaI GTAC 2 cut(s) 283, 427
RsaNI GTAC 2 cut(s) 282, 426
RseI CAYNNNNRTG 2 cut(s) 270, 273
SaqAI TTAA 2 cut(s) 45, 165
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 4 cut(s) 277, 304, 345, 446
SchI GAGTC 3 cut(s) 6, 58, 448
SduI GDGCHC 1 cut(s) 184
SetI ASST 7 cut(s) 27, 287, 328, 364, 406, 445, 463
SfaNI GCATC 1 cut(s) 274
SmiMI CAYNNNNRTG 2 cut(s) 270, 273
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 42, 46, 429
SsiI CCGC 1 cut(s) 139
SspI AATATT 1 cut(s) 169
SspMI CTAG 3 cut(s) 405, 450, 458
TaaI ACNGT 3 cut(s) 85, 193, 201
TaiI ACGT 1 cut(s) 287
TaqI TCGA 3 cut(s) 174, 195, 348
TasI AATT 3 cut(s) 42, 46, 429
Tru1I TTAA 2 cut(s) 45, 165
Tru9I TTAA 2 cut(s) 45, 165
TscAI CASTG 2 cut(s) 88, 264
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 1 cut(s) 259
TspRI CASTG 2 cut(s) 88, 264
VspI ATTAAT 1 cut(s) 45
XspI CTAG 3 cut(s) 405, 450, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.