Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Forward (+)

582260 .. 582634

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAACATATATGCATTACTTCTTGACTTGATCGAAGGAGAGCAATTCCCTAGTATGCTCCCAAATCTTCTCATACACGACGCCCTCGTACTTGGCCGCCGCCGAGTTATCCTTGACGGCGATGACGAGCCGGTAGTTCTCGCCGGCGACGACCTGAGTCTCGCCCTTCACCACGCTCTGAAACTCCAGCTTCTTCCCGGATTTCTTGTTGTACTCCGACACCGCGAACTCCGCAATCTCCTTCACGTGGGGGTCGTTGATGTCCTTAATCGGCTTCCATCCTCCGGCCAGCCCACCGAATGCGGCGGCCGCCAGAGGAAGGAGGACGGCGAGGATTGCGAGGAGGCAGAAGAATGGACGCATCGTGACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

124

Amino Acids

13.99

Weight (kDa)

5.0

Isoelectric Point (pI)

63.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	7 cut(s)	97, 100, 223, 232, 303, 306, 310
AcoI	YGGCCR	3 cut(s)	94, 286, 307
AcvI	CACGTG	1 cut(s)	247
AcyI	GRCGYC	1 cut(s)	81
AfaI	GTAC	2 cut(s)	90, 213
AfiI	CCNNNNNNNGG	3 cut(s)	247, 284, 319
AluBI	AGCT	1 cut(s)	190
AluI	AGCT	1 cut(s)	190
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	3 cut(s)	94, 286, 307
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	1 cut(s)	161
BbrPI	CACGTG	1 cut(s)	247
BccI	CCATC	1 cut(s)	286
BceAI	ACGGC	2 cut(s)	133, 343
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	1 cut(s)	164
BfaI	CTAG	1 cut(s)	51
BisI	GCNGC	5 cut(s)	97, 100, 304, 307, 310
BlsI	GCNGC	5 cut(s)	98, 101, 305, 308, 311
Bme1390I	CCNGG	1 cut(s)	198
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	370
BoxI	GACNNNNGTC	1 cut(s)	156
BpmI	CTGGAG	1 cut(s)	170
BpuMI	CCSGG	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	247
BsaHI	GRCGYC	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	3 cut(s)	247, 284, 319
Bse118I	RCCGGY	2 cut(s)	130, 143
BseGI	GGATG	1 cut(s)	278
BseLI	CCNNNNNNNGG	3 cut(s)	247, 284, 319
BseMII	CTCAG	1 cut(s)	146
BseRI	GAGGAG	1 cut(s)	356
BseX3I	CGGCCG	1 cut(s)	307
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	3 cut(s)	96, 288, 309
BsiEI	CGRYCG	1 cut(s)	310
BsiSI	CCGG	4 cut(s)	131, 144, 198, 285
BslI	CCNNNNNNNGG	3 cut(s)	247, 284, 319
BsmAI	GTCTC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	3 cut(s)	96, 288, 309
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	7 cut(s)	97, 100, 223, 232, 303, 306, 310
BspANI	GGCC	3 cut(s)	96, 288, 309
BspCNI	CTCAG	1 cut(s)	147
BspFNI	CGCG	1 cut(s)	225
BsrFI	RCCGGY	2 cut(s)	130, 143
BssAI	RCCGGY	2 cut(s)	130, 143
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	81
Bst4CI	ACNGT	1 cut(s)	371
BstACI	GRCGYC	1 cut(s)	81
BstBAI	YACGTR	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	145, 290
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	1 cut(s)	164
BstMBI	GATC	1 cut(s)	30
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 309, 336
BstPAI	GACNNNNGTC	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	225
BstZI	CGGCCG	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	96, 288, 309
BtgZI	GCGATG	1 cut(s)	135
BtsCI	GGATG	1 cut(s)	278
Cac8I	GCNNGC	2 cut(s)	145, 290
CciNI	GCGGCCGC	1 cut(s)	307
Cfr10I	RCCGGY	2 cut(s)	130, 143
CseI	GACGC	2 cut(s)	89, 367
Csp6I	GTAC	2 cut(s)	89, 212
CviJI	RGCY	7 cut(s)	96, 130, 190, 274, 288, 292, 309
CviKI_1	RGCY	7 cut(s)	96, 130, 190, 274, 288, 292, 309
CviQI	GTAC	2 cut(s)	89, 212
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	3 cut(s)	94, 286, 307
EagI	CGGCCG	1 cut(s)	307
EclXI	CGGCCG	1 cut(s)	307
Eco52I	CGGCCG	1 cut(s)	307
Eco72I	CACGTG	1 cut(s)	247
EcoT22I	ATGCAT	1 cut(s)	16
FaiI	YATR	5 cut(s)	8, 10, 12, 56, 74
Fnu4HI	GCNGC	5 cut(s)	97, 100, 304, 307, 310
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	5 cut(s)	97, 100, 304, 307, 310
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	5 cut(s)	97, 100, 304, 307, 310
GsuI	CTGGAG	1 cut(s)	170
HaeIII	GGCC	3 cut(s)	96, 288, 309
HapII	CCGG	4 cut(s)	131, 144, 198, 285
HgaI	GACGC	2 cut(s)	89, 367
Hin1I	GRCGYC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	157
HpaII	CCGG	4 cut(s)	131, 144, 198, 285
HphI	GGTGA	1 cut(s)	161
Hpy188I	TCNGA	2 cut(s)	180, 218
Hpy188III	TCNNGA	2 cut(s)	23, 365
Hpy99I	CGWCG	2 cut(s)	83, 152
HpyAV	CCTTC	4 cut(s)	29, 176, 251, 313
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	1 cut(s)	14
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 309, 336
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	246
Hsp92I	GRCGYC	1 cut(s)	81
KroI	GCCGGC	1 cut(s)	143
KroNI	GCCGGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	63
LpnPI	CCDG	8 cut(s)	144, 157, 167, 200, 211, 298, 302, 326
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	51
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	3 cut(s)	59, 185, 362
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	241
MnlI	CCTC	7 cut(s)	95, 292, 309, 316, 325, 334, 337
Mph1103I	ATGCAT	1 cut(s)	16
MreI	CGCCGGCG	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	143
MseI	TTAA	1 cut(s)	267
MspI	CCGG	4 cut(s)	131, 144, 198, 285
MspR9I	CCNGG	1 cut(s)	198
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	231, 309, 336
NaeI	GCCGGC	1 cut(s)	145
NciI	CCSGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	30
NgoMIV	GCCGGC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	365
NotI	GCGGCCGC	1 cut(s)	307
NsiI	ATGCAT	1 cut(s)	16
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 123, 147, 252
PctI	GAATGC	1 cut(s)	305
PdiI	GCCGGC	1 cut(s)	145
PfoI	TCCNGGA	1 cut(s)	196
PkrI	GCNGC	5 cut(s)	98, 101, 305, 308, 311
PleI	GAGTC	1 cut(s)	165
PmaCI	CACGTG	1 cut(s)	247
PmlI	CACGTG	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	165
Ppu21I	YACGTR	1 cut(s)	247
PshAI	GACNNNNGTC	1 cut(s)	156
PspCI	CACGTG	1 cut(s)	247
RsaI	GTAC	2 cut(s)	90, 213
RsaNI	GTAC	2 cut(s)	89, 212
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	5 cut(s)	97, 100, 304, 307, 310
Sau3AI	GATC	1 cut(s)	30
SchI	GAGTC	1 cut(s)	166
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	3 cut(s)	156, 192, 249
SfaNI	GCATC	1 cut(s)	370
SgrAI	CRCCGGYG	1 cut(s)	143
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	7 cut(s)	97, 100, 223, 232, 303, 306, 310
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	1 cut(s)	196
TaaI	ACNGT	1 cut(s)	371
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	1 cut(s)	33
TasI	AATT	1 cut(s)	44
TatI	WGTACW	1 cut(s)	211
TauI	GCSGC	5 cut(s)	99, 102, 306, 309, 312
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	1 cut(s)	17
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.