Rh5AG077200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003327
Physical Location & Seq
Reverse (-)
6605932 .. 6607977
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG077200.1

Sequence Viewer

Length: 312 bp
ATGGGGCGACGACTCATCCCTGACCTCAATGTGAAGAAGATAATTAATTCCTCCTACCACTTGACTCTCACCCTTGAGAATGCTCTGAAACACCAACTTCTTGTGGGATTGTTTGCTGATTTCAGAAACTGCAAACTCCGCTATCTCTTTCAGATAGGGTTTGTTGATATTTTCAATGGGGCCCCAACCACCGTCGGACTGTCGCCGGAGTTGGTCAGCAGCTACAAAAGGGGAGAGAAGGAGGAGGAGGAGGCAGTGACGCATCATCATGGTGACCGTACGTGGATTTTCTTCGTTCAAATTTGGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.94

Weight (kDa)

7.94

Isoelectric Point (pI)

27.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 139
AcsI RAATTY 1 cut(s) 300
AfaI GTAC 1 cut(s) 280
AgsI TTSAA 2 cut(s) 175, 299
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
AlwNI CAGNNNCTG 1 cut(s) 129
AoxI GGCC 1 cut(s) 180
ApaI GGGCCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 219
ApoI RAATTY 1 cut(s) 300
AseI ATTAAT 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 180, 181
AsuHPI GGTGA 2 cut(s) 61, 284
BaeGI GKGCMC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 231
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
BmgT120I GGNCC 2 cut(s) 180, 181
BmiI GGNNCC 3 cut(s) 181, 182, 183
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 95
BsaAI YACGTR 1 cut(s) 282
BseGI GGATG 1 cut(s) 15
BseRI GAGGAG 3 cut(s) 257, 260, 263
BseSI GKGCMC 1 cut(s) 184
BseXI GCAGC 1 cut(s) 231
BshFI GGCC 1 cut(s) 182
BsiSI CCGG 1 cut(s) 206
BsiWI CGTACG 1 cut(s) 278
BsmI GAATGC 1 cut(s) 85
BsnI GGCC 1 cut(s) 182
Bsp120I GGGCCC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 184
BspACI CCGC 1 cut(s) 139
BspANI GGCC 1 cut(s) 182
BspLI GGNNCC 3 cut(s) 181, 182, 183
Bst4CI ACNGT 3 cut(s) 193, 201, 278
BstBAI YACGTR 1 cut(s) 282
BstEII GGTNACC 1 cut(s) 272
BstF5I GGATG 1 cut(s) 15
BstMWI GCNNNNNNNGC 1 cut(s) 138
BstPI GGTNACC 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 184
BstV1I GCAGC 1 cut(s) 231
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
CaiI CAGNNNCTG 1 cut(s) 129
Cfr13I GGNCC 2 cut(s) 180, 181
CseI GACGC 1 cut(s) 268
Csp6I GTAC 1 cut(s) 279
CviAII CATG 1 cut(s) 269
CviJI RGCY 3 cut(s) 182, 222, 307
CviKI_1 RGCY 3 cut(s) 182, 222, 307
CviQI GTAC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 184
Eco91I GGTNACC 1 cut(s) 272
EcoO109I RGGNCCY 2 cut(s) 180, 181
EcoO65I GGTNACC 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 184
FaeI CATG 1 cut(s) 272
FaiI YATR 1 cut(s) 270
FatI CATG 1 cut(s) 268
Fnu4HI GCNGC 1 cut(s) 220
FokI GGATG 1 cut(s) 2
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 182
HapII CCGG 1 cut(s) 206
HgaI GACGC 1 cut(s) 268
Hin1II CATG 1 cut(s) 272
HinfI GANTC 2 cut(s) 12, 64
HpaII CCGG 1 cut(s) 206
HphI GGTGA 2 cut(s) 61, 284
Hpy188I TCNGA 4 cut(s) 87, 125, 153, 197
Hpy99I CGWCG 2 cut(s) 12, 197
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 3 cut(s) 193, 201, 278
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 1 cut(s) 138
HpySE526I ACGT 1 cut(s) 281
Hsp92II CATG 1 cut(s) 272
LpnPI CCDG 2 cut(s) 33, 219
Lsp1109I GCAGC 1 cut(s) 231
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 256, 272
MboII GAAGA 3 cut(s) 46, 49, 283
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 3 cut(s) 42, 46, 300
MlyI GAGTC 2 cut(s) 6, 58
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 6 cut(s) 35, 61, 235, 238, 241, 244
MseI TTAA 2 cut(s) 45, 310
MslI CAYNNNNRTG 2 cut(s) 267, 270
MspI CCGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 85
MwoI GCNNNNNNNGC 1 cut(s) 138
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 3 cut(s) 181, 182, 183
NmuCI GTSAC 2 cut(s) 256, 272
PctI GAATGC 1 cut(s) 85
Pfl23II CGTACG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 221
PleI GAGTC 2 cut(s) 6, 58
PpsI GAGTC 2 cut(s) 6, 58
Ppu21I YACGTR 1 cut(s) 282
PshBI ATTAAT 1 cut(s) 45
PspEI GGTNACC 1 cut(s) 272
PspLI CGTACG 1 cut(s) 278
PspN4I GGNNCC 3 cut(s) 181, 182, 183
PspOMI GGGCCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 180, 181
PstNI CAGNNNCTG 1 cut(s) 129
RsaI GTAC 1 cut(s) 280
RsaNI GTAC 1 cut(s) 279
RseI CAYNNNNRTG 2 cut(s) 267, 270
SaqAI TTAA 2 cut(s) 45, 310
SatI GCNGC 1 cut(s) 220
Sau96I GGNCC 2 cut(s) 180, 181
SchI GAGTC 2 cut(s) 6, 58
SduI GDGCHC 1 cut(s) 184
SetI ASST 3 cut(s) 27, 224, 284
SfaNI GCATC 1 cut(s) 271
SgeI CNNG 7 cut(s) 32, 73, 86, 113, 218, 281, 294
SmiMI CAYNNNNRTG 2 cut(s) 267, 270
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 3 cut(s) 42, 46, 300
SsiI CCGC 1 cut(s) 139
TaaI ACNGT 3 cut(s) 193, 201, 278
TaiI ACGT 1 cut(s) 284
TasI AATT 3 cut(s) 42, 46, 300
Tru1I TTAA 2 cut(s) 45, 310
Tru9I TTAA 2 cut(s) 45, 310
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 256, 272
TseI GCWGC 1 cut(s) 219
Tsp45I GTSAC 2 cut(s) 256, 272
TspRI CASTG 1 cut(s) 261
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.