Rw3G018960

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003327
Physical Location & Seq
Reverse (-)
21367646 .. 21368035
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018960.1

Sequence Viewer

Length: 390 bp
ATGATTCTCTTCTCATCGTCATTGGCCCATGCAAACAACATTGATGTTGCTGAGATCTTCAACCAGTGGATGTGGATCGTCAAACATCAAAGGGTGTACTCTTCCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGTCAACTGGGAGTATATCGAGAACTTCAAGAAGATCGGCAACAAGACCTATACCTTGGGTCTGAATAACTTCTCGGACTTAAGCCCGGAAGAATTCCTGGAAACTTATAGTTGCGGCAAAGATCCCACTCCCACCAGTACCCACTCAAACTCGACCTCCACATATCCTCATGTTGGCATGGATTATCTTGACTATGCATGCATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

129

Amino Acids

15.04

Weight (kDa)

6.58

Isoelectric Point (pI)

42.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 25 - 79 1.8e-17 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 83, 257
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 98, 280
AfiI CCNNNNNNNGG 1 cut(s) 314
AflII CTTAAG 1 cut(s) 220
AgsI TTSAA 3 cut(s) 61, 139, 169
AjnI CCWGG 1 cut(s) 237
AlwI GGATC 2 cut(s) 83, 257
AoxI GGCC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 233
Asp700I GAANNNNTTC 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 1 cut(s) 227
BccI CCATC 1 cut(s) 373
BciT130I CCWGG 1 cut(s) 239
BcnI CCSGG 1 cut(s) 227
BfrI CTTAAG 1 cut(s) 220
BglII AGATCT 1 cut(s) 54
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 2 cut(s) 227, 239
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 227, 239
BmrI ACTGGG 1 cut(s) 157
BmuI ACTGGG 1 cut(s) 157
BpuMI CCSGG 1 cut(s) 227
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 2 cut(s) 105, 195
BsaXI ACNNNNNCTCC 2 cut(s) 281, 311
Bsc4I CCNNNNNNNGG 1 cut(s) 314
Bse1I ACTGG 4 cut(s) 64, 152, 276, 373
Bse8I GATNNNNATC 1 cut(s) 74
BseBI CCWGG 1 cut(s) 239
BseDI CCNNGG 2 cut(s) 105, 195
BseGI GGATG 1 cut(s) 75
BseJI GATNNNNATC 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 314
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 4 cut(s) 64, 152, 276, 373
BshFI GGCC 1 cut(s) 26
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 314
BsmFI GGGAC 1 cut(s) 379
BsnI GGCC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 54, 75, 174, 262
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 26
BspCNI CTCAG 1 cut(s) 43
BspPI GGATC 2 cut(s) 83, 257
BspTI CTTAAG 1 cut(s) 220
BsrI ACTGG 4 cut(s) 64, 152, 276, 373
BssECI CCNNGG 2 cut(s) 105, 195
BssMI GATC 4 cut(s) 54, 75, 174, 262
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 1 cut(s) 239
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 2 cut(s) 14, 106
BstAFI CTTAAG 1 cut(s) 220
BstC8I GCNNGC 2 cut(s) 340, 351
BstDEI CTNAG 1 cut(s) 51
BstF5I GGATG 1 cut(s) 75
BstKTI GATC 4 cut(s) 57, 78, 177, 265
BstMBI GATC 4 cut(s) 54, 75, 174, 262
BstNI CCWGG 1 cut(s) 239
BstNSI RCATGY 2 cut(s) 342, 353
BstSCI CCNGG 2 cut(s) 225, 237
BstX2I RGATCY 2 cut(s) 54, 262
BstYI RGATCY 2 cut(s) 54, 262
BsuRI GGCC 1 cut(s) 26
BtsCI GGATG 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 2 cut(s) 340, 351
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 2 cut(s) 97, 279
CviAII CATG 6 cut(s) 29, 311, 319, 339, 343, 350
CviJI RGCY 2 cut(s) 26, 225
CviKI_1 RGCY 2 cut(s) 26, 225
CviQI GTAC 2 cut(s) 97, 279
DdeI CTNAG 1 cut(s) 51
DpnI GATC 4 cut(s) 56, 77, 176, 264
DpnII GATC 4 cut(s) 54, 75, 174, 262
Eam1104I CTCTTC 2 cut(s) 14, 106
EarI CTCTTC 2 cut(s) 14, 106
Eco130I CCWWGG 1 cut(s) 195
EcoRI GAATTC 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 195
EcoT22I ATGCAT 2 cut(s) 340, 344
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 6 cut(s) 32, 314, 322, 342, 346, 353
FaqI GGGAC 1 cut(s) 379
FatI CATG 6 cut(s) 28, 310, 318, 338, 342, 349
Fnu4HI GCNGC 1 cut(s) 256
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 256
HaeIII GGCC 1 cut(s) 26
HapII CCGG 1 cut(s) 227
Hin1II CATG 6 cut(s) 32, 314, 322, 342, 346, 353
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 2 cut(s) 4, 358
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 3 cut(s) 97, 112, 145
Hpy188I TCNGA 3 cut(s) 106, 204, 217
Hpy188III TCNNGA 3 cut(s) 160, 169, 329
Hpy8I GTNNAC 3 cut(s) 97, 112, 145
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4V TGCA 3 cut(s) 32, 338, 342
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 6 cut(s) 32, 314, 322, 342, 346, 353
Kzo9I GATC 4 cut(s) 54, 75, 174, 262
LpnPI CCDG 7 cut(s) 77, 133, 224, 240, 251, 289, 354
MalI GATC 4 cut(s) 56, 77, 176, 264
MboI GATC 4 cut(s) 54, 75, 174, 262
MboII GAAGA 5 cut(s) 49, 93, 184, 242, 388
MflI RGATCY 2 cut(s) 54, 262
MluCI AATT 1 cut(s) 233
MnlI CCTC 4 cut(s) 100, 307, 318, 339
Mph1103I ATGCAT 2 cut(s) 340, 344
MroXI GAANNNNTTC 1 cut(s) 209
MseI TTAA 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 220
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 227, 239
MvaI CCWGG 1 cut(s) 239
NciI CCSGG 1 cut(s) 227
NdeII GATC 4 cut(s) 54, 75, 174, 262
NlaIII CATG 6 cut(s) 32, 314, 322, 342, 346, 353
NsiI ATGCAT 2 cut(s) 340, 344
NspI RCATGY 2 cut(s) 342, 353
PaeI GCATGC 2 cut(s) 342, 353
PdmI GAANNNNTTC 1 cut(s) 209
PfeI GAWTC 2 cut(s) 4, 358
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 237
PspGI CCWGG 1 cut(s) 237
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 2 cut(s) 54, 262
RsaI GTAC 2 cut(s) 98, 280
RsaNI GTAC 2 cut(s) 97, 279
SaqAI TTAA 1 cut(s) 221
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 4 cut(s) 54, 75, 174, 262
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 227, 239
SetI ASST 4 cut(s) 111, 191, 197, 299
SmlI CTYRAG 1 cut(s) 220
SmoI CTYRAG 1 cut(s) 220
SphI GCATGC 2 cut(s) 342, 353
Sse9I AATT 1 cut(s) 233
SsiI CCGC 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 225, 237
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 1 cut(s) 125
TaqI TCGA 2 cut(s) 159, 293
TasI AATT 1 cut(s) 233
TatI WGTACW 1 cut(s) 96
TauI GCSGC 1 cut(s) 258
TfiI GAWTC 2 cut(s) 4, 358
Tru1I TTAA 1 cut(s) 221
Tru9I TTAA 1 cut(s) 221
TscAI CASTG 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 371
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 220
XapI RAATTY 1 cut(s) 233
XceI RCATGY 2 cut(s) 342, 353
XmnI GAANNNNTTC 1 cut(s) 209
Zsp2I ATGCAT 2 cut(s) 340, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.