Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Forward (+)

27717918 .. 27722330

Gene Structure 4413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023743

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGCAACTCCATAATATTCTGTATGGTGATGCTAAAGGATGGTTTAAAAGAACCTGTTCTTTTCTGTATCCATATGTTCTCGGAGTTGTGAACCCTGATGCTAAAGCTGTACGAGGATGGAACAAGTTCTTTGTCATATCTGTAATAGAGATAGTAGACCAACCATATAAAATTGCTCTCAATTATCTCCATGGAAACTTTTTAGTCGACTTAATTATTGTTTTGCCACTTCCTCAGGTTTATGGGGTTCTGCCCCTGCTTGCTGGTCAATCTCCAAATGGCTTCTTTGTATTCGAGTCAGCTTGGACAAATTTTTTTATAAACACTCTCACTGCCATGTTATTGGGTCATGCTGGTACCTCCTTGGCTTATAGGTGTAGGGTTAACCAATGTCTTCGAGATGCCTGCCATAACTCTAATCTGCAGTCATGCGGGAGTTTAATAGATTGTTGCAATGCTCAATCTATTCCAGAGTCAACTAAATGGAGAGAAAATGAGGAGGCTGCTGGTTGTTTTAATCCGGAAGGAGATTTCTCCTATGGAATATATACTCCAGTTGTCAATCTCACTACAAGAGATAGCATGACTAAATATTTATACTCACTGTTTTGGGGATTCCAGCAAATCGTTGATTGTGATAAGTGGTCTAACCTAGGCTGCAGAGGCGGTCTCGTAACGGATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTATCCATATGATGCTAAGGATGGAATATGCAATCTCGATAAGGCAAAACAATTTAAAGCAAGTATCACTGGGTTTGTTCGCGTGCCGCCGAATGACGAGTATGAGCTGGTGATGGCAGTATGCCAGCAGCCGGTAGCGGCCGATATTAAGACGACAGATGATTTTCAGTTTTACACTGGTGGAGTATTCAGTAAAGACTGTGGAAATGGGGTGATAAACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGCGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGAAGGTCATTGTTTCATCAATGCGAGAGCTTCTTATCCCATAATTGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

377

Amino Acids

42.07

Weight (kDa)

5.89

Isoelectric Point (pI)

27.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	207 - 373	6.2e-47	Papain family cysteine protease
Peptidase_C1_2	PF03051	310 - 352	7.4e-07	Peptidase C1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	320
Acc65I	GGTACC	1 cut(s)	356
AccB1I	GGYRCC	1 cut(s)	356
AccI	GTMKAC	2 cut(s)	156, 207
AccII	CGCG	1 cut(s)	810
AccIII	TCCGGA	1 cut(s)	520
AciI	CCGC	4 cut(s)	432, 666, 815, 866
AcoI	YGGCCR	1 cut(s)	867
AcsI	RAATTY	1 cut(s)	310
AcuI	CTGAAG	1 cut(s)	1028
AfaI	GTAC	4 cut(s)	111, 358, 998, 1046
AfiI	CCNNNNNNNGG	1 cut(s)	859
AluBI	AGCT	4 cut(s)	107, 302, 835, 1106
AluI	AGCT	4 cut(s)	107, 302, 835, 1106
Alw26I	GTCTC	2 cut(s)	674, 971
Aor13HI	TCCGGA	1 cut(s)	520
AoxI	GGCC	2 cut(s)	709, 867
ApeKI	GCWGC	3 cut(s)	503, 657, 856
ApoI	RAATTY	1 cut(s)	310
Asp700I	GAANNNNTTC	2 cut(s)	55, 125
Asp718I	GGTACC	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	652
AsuHPI	GGTGA	4 cut(s)	38, 706, 850, 952
AvrII	CCTAGG	1 cut(s)	652
AxyI	CCTNAGG	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	356
BauI	CACGAG	1 cut(s)	1015
BbsI	GAAGAC	1 cut(s)	386
BbvI	GCAGC	3 cut(s)	490, 644, 868
BccI	CCATC	4 cut(s)	33, 111, 743, 835
BceAI	ACGGC	1 cut(s)	1003
BcgI	CGANNNNNNTGC	2 cut(s)	387, 421
BciVI	GTATCC	1 cut(s)	78
BclI	TGATCA	1 cut(s)	1056
BcoDI	GTCTC	2 cut(s)	674, 971
BfaI	CTAG	2 cut(s)	653, 1068
BfmI	CTRYAG	2 cut(s)	422, 658
BfuI	GTATCC	1 cut(s)	78
BisI	GCNGC	5 cut(s)	504, 658, 815, 857, 867
BlnI	CCTAGG	1 cut(s)	652
BlsI	GCNGC	5 cut(s)	505, 659, 816, 858, 868
BmcAI	AGTACT	1 cut(s)	998
BmiI	GGNNCC	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	807
BmsI	GCATC	5 cut(s)	19, 88, 391, 670, 730
BmuI	ACTGGG	1 cut(s)	807
BpiI	GAAGAC	1 cut(s)	386
BplI	GAGNNNNNCTC	2 cut(s)	654, 686
BpmI	CTGGAG	1 cut(s)	537
Bpu10I	CCTNAGC	1 cut(s)	744
BsaAI	YACGTR	1 cut(s)	694
BsaI	GGTCTC	1 cut(s)	674
BsaJI	CCNNGG	3 cut(s)	190, 363, 652
BsaWI	WCCGGW	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	859
Bse118I	RCCGGY	1 cut(s)	859
Bse1I	ACTGG	5 cut(s)	554, 717, 802, 910, 1004
Bse21I	CCTNAGG	1 cut(s)	234
Bse3DI	GCAATG	1 cut(s)	460
BseAI	TCCGGA	1 cut(s)	520
BseDI	CCNNGG	3 cut(s)	190, 363, 652
BseGI	GGATG	4 cut(s)	44, 122, 685, 754
BseLI	CCNNNNNNNGG	1 cut(s)	859
BseMI	GCAATG	1 cut(s)	460
BseMII	CTCAG	1 cut(s)	248
BseNI	ACTGG	5 cut(s)	554, 717, 802, 910, 1004
BseRI	GAGGAG	1 cut(s)	512
BseX3I	CGGCCG	1 cut(s)	867
BseXI	GCAGC	3 cut(s)	490, 644, 868
Bsh1236I	CGCG	1 cut(s)	810
Bsh1285I	CGRYCG	1 cut(s)	870
BshFI	GGCC	2 cut(s)	711, 869
BshNI	GGYRCC	1 cut(s)	356
BsiEI	CGRYCG	1 cut(s)	870
BsiSI	CCGG	2 cut(s)	521, 860
BslI	CCNNNNNNNGG	1 cut(s)	859
BsmAI	GTCTC	2 cut(s)	674, 971
BsnI	GGCC	2 cut(s)	711, 869
Bso31I	GGTCTC	1 cut(s)	674
Bsp13I	TCCGGA	1 cut(s)	520
Bsp143I	GATC	1 cut(s)	1056
Bsp19I	CCATGG	1 cut(s)	190
BspACI	CCGC	4 cut(s)	432, 666, 815, 866
BspANI	GGCC	2 cut(s)	711, 869
BspCNI	CTCAG	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	520
BspFNI	CGCG	1 cut(s)	810
BspLI	GGNNCC	1 cut(s)	358
BspMAI	CTGCAG	2 cut(s)	426, 662
BspT107I	GGYRCC	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	674
BsrDI	GCAATG	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	859
BsrI	ACTGG	5 cut(s)	554, 717, 802, 910, 1004
BssAI	RCCGGY	1 cut(s)	859
BssECI	CCNNGG	3 cut(s)	190, 363, 652
BssMI	GATC	1 cut(s)	1056
BssSI	CACGAG	1 cut(s)	1015
BssT1I	CCWWGG	3 cut(s)	190, 363, 652
Bst2BI	CACGAG	1 cut(s)	1015
Bst4CI	ACNGT	2 cut(s)	606, 929
BstBAI	YACGTR	1 cut(s)	694
BstC8I	GCNNGC	5 cut(s)	261, 406, 812, 854, 1073
BstDEI	CTNAG	2 cut(s)	234, 744
BstDSI	CCRYGG	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	44, 122, 685, 754
BstFNI	CGCG	1 cut(s)	810
BstKTI	GATC	1 cut(s)	1059
BstMAI	GTCTC	2 cut(s)	674, 971
BstMBI	GATC	1 cut(s)	1056
BstMCI	CGRYCG	1 cut(s)	870
BstMWI	GCNNNNNNNGC	1 cut(s)	663
BstSFI	CTRYAG	2 cut(s)	422, 658
BstSNI	TACGTA	1 cut(s)	694
BstUI	CGCG	1 cut(s)	810
BstV1I	GCAGC	3 cut(s)	490, 644, 868
BstV2I	GAAGAC	1 cut(s)	386
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstZI	CGGCCG	1 cut(s)	867
Bsu36I	CCTNAGG	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	78
BsuRI	GGCC	2 cut(s)	711, 869
BtgI	CCRYGG	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	44, 122, 685, 754
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	5 cut(s)	330, 602, 724, 795, 903
Cac8I	GCNNGC	5 cut(s)	261, 406, 812, 854, 1073
Cfr10I	RCCGGY	1 cut(s)	859
Csp6I	GTAC	4 cut(s)	110, 357, 997, 1045
CviAII	CATG	6 cut(s)	191, 337, 350, 429, 583, 1048
CviQI	GTAC	4 cut(s)	110, 357, 997, 1045
DdeI	CTNAG	2 cut(s)	234, 744
DpnI	GATC	1 cut(s)	1058
DpnII	GATC	1 cut(s)	1056
DraI	TTTAAA	2 cut(s)	46, 784
EaeI	YGGCCR	1 cut(s)	867
EagI	CGGCCG	1 cut(s)	867
EclXI	CGGCCG	1 cut(s)	867
Eco105I	TACGTA	1 cut(s)	694
Eco130I	CCWWGG	3 cut(s)	190, 363, 652
Eco147I	AGGCCT	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	674
Eco52I	CGGCCG	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	1028
Eco81I	CCTNAGG	1 cut(s)	234
EcoT14I	CCWWGG	3 cut(s)	190, 363, 652
EcoT22I	ATGCAT	1 cut(s)	685
ErhI	CCWWGG	3 cut(s)	190, 363, 652
FaeI	CATG	6 cut(s)	194, 340, 353, 432, 586, 1051
FatI	CATG	6 cut(s)	190, 336, 349, 428, 582, 1047
FauI	CCCGC	1 cut(s)	425
FauNDI	CATATG	2 cut(s)	73, 736
FbaI	TGATCA	1 cut(s)	1056
FblI	GTMKAC	2 cut(s)	156, 207
Fnu4HI	GCNGC	5 cut(s)	504, 658, 815, 857, 867
FokI	GGATG	4 cut(s)	51, 129, 692, 761
Fsp4HI	GCNGC	5 cut(s)	504, 658, 815, 857, 867
FspBI	CTAG	2 cut(s)	653, 1068
GluI	GCNGC	5 cut(s)	504, 658, 815, 857, 867
GsuI	CTGGAG	1 cut(s)	537
HaeIII	GGCC	2 cut(s)	711, 869
HapII	CCGG	2 cut(s)	521, 860
Hin1II	CATG	6 cut(s)	194, 340, 353, 432, 586, 1051
HincII	GTYRAC	3 cut(s)	208, 385, 477
HindII	GTYRAC	3 cut(s)	208, 385, 477
HinfI	GANTC	3 cut(s)	296, 473, 615
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	521, 860
HphI	GGTGA	4 cut(s)	38, 706, 850, 952
Hpy166II	GTNNAC	5 cut(s)	91, 157, 208, 385, 477
Hpy188I	TCNGA	2 cut(s)	83, 1061
Hpy188III	TCNNGA	5 cut(s)	398, 470, 521, 764, 1025
Hpy8I	GTNNAC	5 cut(s)	91, 157, 208, 385, 477
HpyAV	CCTTC	3 cut(s)	518, 1031, 1073
HpyCH4III	ACNGT	2 cut(s)	606, 929
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	6 cut(s)	4, 424, 453, 660, 683, 759
HpyF10VI	GCNNNNNNNGC	1 cut(s)	663
HpyF3I	CTNAG	2 cut(s)	234, 744
HpySE526I	ACGT	1 cut(s)	693
Hsp92II	CATG	6 cut(s)	194, 340, 353, 432, 586, 1051
Kpn2I	TCCGGA	1 cut(s)	520
KpnI	GGTACC	1 cut(s)	360
Ksp22I	TGATCA	1 cut(s)	1056
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	1056
Lsp1109I	GCAGC	3 cut(s)	490, 644, 868
LweI	GCATC	5 cut(s)	19, 88, 391, 670, 730
MaeI	CTAG	2 cut(s)	653, 1068
MaeII	ACGT	1 cut(s)	693
MaeIII	GTNAC	1 cut(s)	673
MalI	GATC	1 cut(s)	1058
MboI	GATC	1 cut(s)	1056
MboII	GAAGA	2 cut(s)	386, 1021
MluCI	AATT	8 cut(s)	171, 181, 213, 310, 727, 779, 1119, 1126
MlyI	GAGTC	2 cut(s)	305, 482
MmeI	TCCRAC	1 cut(s)	946
Mph1103I	ATGCAT	1 cut(s)	685
MroI	TCCGGA	1 cut(s)	520
MroXI	GAANNNNTTC	2 cut(s)	55, 125
MseI	TTAA	8 cut(s)	45, 212, 384, 440, 516, 783, 876, 993
MslI	CAYNNNNRTG	2 cut(s)	335, 1052
MspI	CCGG	2 cut(s)	521, 860
MvnI	CGCG	1 cut(s)	810
MwoI	GCNNNNNNNGC	1 cut(s)	663
NcoI	CCATGG	1 cut(s)	190
NdeI	CATATG	2 cut(s)	73, 736
NdeII	GATC	1 cut(s)	1056
NlaIII	CATG	6 cut(s)	194, 340, 353, 432, 586, 1051
NlaIV	GGNNCC	1 cut(s)	358
NsiI	ATGCAT	1 cut(s)	685
PceI	AGGCCT	1 cut(s)	711
PdmI	GAANNNNTTC	2 cut(s)	55, 125
PfeI	GAWTC	1 cut(s)	615
PkrI	GCNGC	5 cut(s)	505, 659, 816, 858, 868
PleI	GAGTC	2 cut(s)	304, 481
PpsI	GAGTC	2 cut(s)	304, 481
Ppu21I	YACGTR	1 cut(s)	694
PsiI	TTATAA	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	358
PstI	CTGCAG	2 cut(s)	426, 662
RsaI	GTAC	4 cut(s)	111, 358, 998, 1046
RsaNI	GTAC	4 cut(s)	110, 357, 997, 1045
RseI	CAYNNNNRTG	2 cut(s)	335, 1052
SalI	GTCGAC	1 cut(s)	206
SaqAI	TTAA	8 cut(s)	45, 212, 384, 440, 516, 783, 876, 993
SatI	GCNGC	5 cut(s)	504, 658, 815, 857, 867
Sau3AI	GATC	1 cut(s)	1056
ScaI	AGTACT	1 cut(s)	998
SchI	GAGTC	2 cut(s)	305, 482
SfaNI	GCATC	5 cut(s)	19, 88, 391, 670, 730
SfcI	CTRYAG	2 cut(s)	422, 658
SmiMI	CAYNNNNRTG	2 cut(s)	335, 1052
SnaBI	TACGTA	1 cut(s)	694
Sse9I	AATT	8 cut(s)	171, 181, 213, 310, 727, 779, 1119, 1126
SseBI	AGGCCT	1 cut(s)	711
SsiI	CCGC	4 cut(s)	432, 666, 815, 866
SspI	AATATT	2 cut(s)	16, 593
SspMI	CTAG	2 cut(s)	653, 1068
StuI	AGGCCT	1 cut(s)	711
StyI	CCWWGG	3 cut(s)	190, 363, 652
TaaI	ACNGT	2 cut(s)	606, 929
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	4 cut(s)	207, 294, 397, 765
TasI	AATT	8 cut(s)	171, 181, 213, 310, 727, 779, 1119, 1126
TatI	WGTACW	1 cut(s)	996
TauI	GCSGC	2 cut(s)	817, 869
TfiI	GAWTC	1 cut(s)	615
Tru1I	TTAA	8 cut(s)	45, 212, 384, 440, 516, 783, 876, 993
Tru9I	TTAA	8 cut(s)	45, 212, 384, 440, 516, 783, 876, 993
TscAI	CASTG	5 cut(s)	337, 609, 724, 802, 910
TseI	GCWGC	3 cut(s)	503, 657, 856
TspDTI	ATGAA	1 cut(s)	1081
TspGWI	ACGGA	3 cut(s)	692, 715, 720
TspRI	CASTG	5 cut(s)	337, 609, 724, 802, 910
XapI	RAATTY	1 cut(s)	310
XcmI	CCANNNNNNNNNTGG	1 cut(s)	967
XmaJI	CCTAGG	1 cut(s)	652
XmiI	GTMKAC	2 cut(s)	156, 207
XmnI	GAANNNNTTC	2 cut(s)	55, 125
XspI	CTAG	2 cut(s)	653, 1068
ZrmI	AGTACT	1 cut(s)	998
Zsp2I	ATGCAT	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.