Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

7149411 .. 7149812

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG090300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAAGGATTCCAGTTTCCTGAAATTCAGCCAAGGTCTATCCCAGACATGACACTCATAATTCAGAATTGGGCTAGTAGGCAAGGACTCATCCCTGACCGCAATGACAAGATAATAACTCATTCCTTCTACAACCTGATCAAGGCCACTGACCACTCTCTGGAACACCAACGTTTTCCCGGATTGCTTATTGAACTCGGAGACAGCAAACTCGGCGATCTCTTTCACCTCGGGGTCGTTGATGTTAAAGGGCAGGCGTGCACCAATTACCGGACCGAAGGAAGCATCGAAGGAAACAGCACCAACGGCGAGGAGAAAACCAAAGAGAAAGAGGGAGAGGAGGAGGCAGATTGGACGCATCATGATGGCTTACGGTTGGGGCATGGAGGCTACTCAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

133

Amino Acids

14.92

Weight (kDa)

5.14

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	160
AciI	CCGC	1 cut(s)	100
AclI	AACGTT	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	24
AfiI	CCNNNNNNNGG	3 cut(s)	142, 160, 270
AgsI	TTSAA	1 cut(s)	194
Alw21I	GWGCWC	1 cut(s)	263
Alw26I	GTCTC	1 cut(s)	195
Alw44I	GTGCAC	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	144
ApaLI	GTGCAC	1 cut(s)	259
ApoI	RAATTY	1 cut(s)	24
AspS9I	GGNCC	1 cut(s)	273
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	263
Bbv12I	GWGCWC	1 cut(s)	263
BccI	CCATC	1 cut(s)	359
BceAI	ACGGC	1 cut(s)	322
BclI	TGATCA	1 cut(s)	138
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	2 cut(s)	75, 400
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	273
BmrFI	CCNGG	1 cut(s)	180
BmsI	GCATC	2 cut(s)	294, 367
BpuMI	CCSGG	1 cut(s)	180
BsaJI	CCNNGG	2 cut(s)	32, 229
BsaWI	WCCGGW	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	3 cut(s)	142, 160, 270
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	109
BseDI	CCNNGG	2 cut(s)	32, 229
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	3 cut(s)	142, 160, 270
BseMI	GCAATG	1 cut(s)	109
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	3 cut(s)	326, 353, 356
BseSI	GKGCMC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	263
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	2 cut(s)	180, 271
BslI	CCNNNNNNNGG	3 cut(s)	142, 160, 270
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	263
Bsp143I	GATC	2 cut(s)	138, 217
BspACI	CCGC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	109
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	2 cut(s)	32, 229
BssMI	GATC	2 cut(s)	138, 217
BssT1I	CCWWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	255, 259
BstDEI	CTNAG	1 cut(s)	394
BstENI	CCTNNNNNAGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	90
BstKTI	GATC	2 cut(s)	141, 220
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	2 cut(s)	138, 217
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 306, 396
BstSCI	CCNGG	1 cut(s)	178
BstSLI	GKGCMC	1 cut(s)	263
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	147
Cac8I	GCNNGC	2 cut(s)	255, 259
CciI	TCATGA	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	273
CpoI	CGGWCCG	1 cut(s)	273
CseI	GACGC	1 cut(s)	364
CspI	CGGWCCG	1 cut(s)	273
CviAII	CATG	3 cut(s)	49, 362, 383
CviJI	RGCY	6 cut(s)	31, 74, 146, 369, 390, 399
CviKI_1	RGCY	6 cut(s)	31, 74, 146, 369, 390, 399
DdeI	CTNAG	1 cut(s)	394
DpnI	GATC	2 cut(s)	140, 219
DpnII	GATC	2 cut(s)	138, 217
Eco130I	CCWWGG	1 cut(s)	32
Eco47I	GGWCC	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	230
EcoNI	CCTNNNNNAGG	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	32
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	3 cut(s)	52, 365, 386
FaiI	YATR	4 cut(s)	50, 59, 363, 384
FatI	CATG	3 cut(s)	48, 361, 382
FbaI	TGATCA	1 cut(s)	138
FokI	GGATG	1 cut(s)	77
FspBI	CTAG	2 cut(s)	75, 400
HaeIII	GGCC	1 cut(s)	146
HapII	CCGG	2 cut(s)	180, 271
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	3 cut(s)	52, 365, 386
HinfI	GANTC	2 cut(s)	9, 87
HpaII	CCGG	2 cut(s)	180, 271
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	2 cut(s)	66, 200
Hpy188III	TCNNGA	3 cut(s)	20, 161, 362
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	3 cut(s)	136, 272, 284
HpyCH4III	ACNGT	1 cut(s)	375
HpyCH4IV	ACGT	1 cut(s)	172
HpyCH4V	TGCA	1 cut(s)	261
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 306, 396
HpyF3I	CTNAG	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	172
Hsp92II	CATG	3 cut(s)	52, 365, 386
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	138, 217
LweI	GCATC	2 cut(s)	294, 367
MaeI	CTAG	2 cut(s)	75, 400
MaeII	ACGT	1 cut(s)	172
MalI	GATC	2 cut(s)	140, 219
MboI	GATC	2 cut(s)	138, 217
MhlI	GDGCHC	1 cut(s)	263
MluCI	AATT	4 cut(s)	24, 60, 67, 265
MlyI	GAGTC	1 cut(s)	81
MnlI	CCTC	7 cut(s)	239, 304, 325, 331, 334, 337, 380
MseI	TTAA	1 cut(s)	246
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	180, 271
MspR9I	CCNGG	1 cut(s)	180
MwoI	GCNNNNNNNGC	3 cut(s)	213, 306, 396
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	138, 217
NlaIII	CATG	3 cut(s)	52, 365, 386
NmeAIII	GCCGAG	1 cut(s)	192
PagI	TCATGA	1 cut(s)	361
PfeI	GAWTC	1 cut(s)	9
PflMI	CCANNNNNTGG	1 cut(s)	160
PfoI	TCCNGGA	1 cut(s)	178
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp1406I	AACGTT	1 cut(s)	172
PspPI	GGNCC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	363
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	246
Sau3AI	GATC	2 cut(s)	138, 217
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	263
SetI	ASST	4 cut(s)	38, 138, 175, 231
SfaNI	GCATC	2 cut(s)	294, 367
SinI	GGWCC	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	363
Sse9I	AATT	4 cut(s)	24, 60, 67, 265
SsiI	CCGC	1 cut(s)	100
SspMI	CTAG	2 cut(s)	75, 400
StyD4I	CCNGG	1 cut(s)	178
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	375
TaiI	ACGT	1 cut(s)	175
TaqI	TCGA	1 cut(s)	288
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	4 cut(s)	24, 60, 67, 265
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	154
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	273
XagI	CCTNNNNNAGG	1 cut(s)	140
XapI	RAATTY	1 cut(s)	24
XspI	CTAG	2 cut(s)	75, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.