Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

16278650 .. 16279514

Gene Structure 865 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTTCTGCCGTTTAAACAGAAGGCTAGACAGAACATTGATATACGACAGTAGTAGAAGGATGGGGAGAAGACTCATCCTTGACCTCAATGTCAAGCAGATACATAAGTCCTTGTACCACTTGACTCTCACCCTTGAGAACCCTCTGGAACACCAACTTCTTGTTGTTGGATTCTTTGTTGATTTCAGAAACCGCAAACTCCGCGATCGTTTTCGTTTCGGGTGTGTCGAGATTTTCGATGGGACCCCAGCCACCGTCGACGGGGCGTCGACGTTGGTCGGCAACGACGAACGGGGAGAGGAGAAGAAGGAGAAGGCAGAGACGCATCATCATGGCAAAGGGTTGAGTTTCTTCGTTCAAGACTTGAAGCCTGGATTTGGATTGGAGAAGGTGGTAGATGTAACGAAAGAGAAAACGAGGACTGATATATATAGTGTGCAACACAGGGCTGGATATTTTGTTTCTTCGTTCAAGTCTGAATTTGGAATGGAGAAGGAAACAGATCGAGGGCTGATATATTATATATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

20.52

Weight (kDa)

9.22

Isoelectric Point (pI)

25.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	89
AccI	GTMKAC	2 cut(s)	258, 269
AccII	CGCG	1 cut(s)	204
AciI	CCGC	2 cut(s)	193, 202
AcsI	RAATTY	1 cut(s)	479
AcyI	GRCGYC	1 cut(s)	266
AfaI	GTAC	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	261, 377
AgsI	TTSAA	3 cut(s)	359, 367, 472
AhdI	GACNNNNNGTC	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	314
ApoI	RAATTY	1 cut(s)	479
AspS9I	GGNCC	1 cut(s)	243
AsuHPI	GGTGA	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	243
BaeI	ACNNNNGTAYC	2 cut(s)	92, 125
BbsI	GAAGAC	1 cut(s)	76
BccI	CCATC	2 cut(s)	55, 233
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	243
BmeRI	GACNNNNNGTC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	243
BmiI	GGNNCC	2 cut(s)	244, 245
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	1 cut(s)	334
BoxI	GACNNNNGTC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	76
BpuEI	CTTGAG	1 cut(s)	155
BsaHI	GRCGYC	1 cut(s)	266
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 377
BseBI	CCWGG	1 cut(s)	372
BseGI	GGATG	2 cut(s)	66, 75
BseLI	CCNNNNNNNGG	2 cut(s)	261, 377
BseRI	GAGGAG	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	247
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	208
BslFI	GGGAC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	261, 377
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	256
Bsp143I	GATC	2 cut(s)	205, 502
BspACI	CCGC	2 cut(s)	193, 202
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	2 cut(s)	244, 245
BssMI	GATC	2 cut(s)	205, 502
BssNI	GRCGYC	1 cut(s)	266
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	50, 256
BstACI	GRCGYC	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	66, 75
BstFNI	CGCG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	208, 505
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	2 cut(s)	205, 502
BstMCI	CGRYCG	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	201
BstNI	CCWGG	1 cut(s)	372
BstPAI	GACNNNNGTC	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	370
BstUI	CGCG	1 cut(s)	204
BstV2I	GAAGAC	1 cut(s)	76
BtsCI	GGATG	2 cut(s)	66, 75
Cfr13I	GGNCC	1 cut(s)	243
CseI	GACGC	2 cut(s)	255, 331
Csp6I	GTAC	1 cut(s)	115
CviAII	CATG	1 cut(s)	332
CviJI	RGCY	5 cut(s)	25, 251, 370, 449, 511
CviKI_1	RGCY	5 cut(s)	25, 251, 370, 449, 511
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	207, 504
DpnII	GATC	2 cut(s)	205, 502
DraI	TTTAAA	1 cut(s)	15
DrdI	GACNNNNNNGTC	1 cut(s)	89
DriI	GACNNNNNGTC	1 cut(s)	265
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1105I	GACNNNNNGTC	1 cut(s)	265
Eco47I	GGWCC	1 cut(s)	243
EcoO109I	RGGNCCY	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	370
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	1 cut(s)	335
FaiI	YATR	9 cut(s)	43, 105, 333, 428, 430, 432, 517, 522, 524
FaqI	GGGAC	1 cut(s)	256
FatI	CATG	1 cut(s)	331
FblI	GTMKAC	2 cut(s)	258, 269
FokI	GGATG	2 cut(s)	62, 73
FspBI	CTAG	1 cut(s)	26
GsaI	CCCAGC	1 cut(s)	251
HgaI	GACGC	2 cut(s)	255, 331
Hin1I	GRCGYC	1 cut(s)	266
Hin1II	CATG	1 cut(s)	335
HincII	GTYRAC	2 cut(s)	259, 270
HindII	GTYRAC	2 cut(s)	259, 270
HinfI	GANTC	3 cut(s)	72, 124, 171
HphI	GGTGA	1 cut(s)	121
Hpy166II	GTNNAC	2 cut(s)	259, 270
Hpy188I	TCNGA	2 cut(s)	188, 478
Hpy188III	TCNNGA	3 cut(s)	146, 229, 359
Hpy8I	GTNNAC	2 cut(s)	259, 270
Hpy99I	CGWCG	5 cut(s)	260, 263, 271, 274, 290
HpyAV	CCTTC	6 cut(s)	15, 51, 301, 307, 382, 487
HpyCH4III	ACNGT	2 cut(s)	50, 256
HpyCH4IV	ACGT	1 cut(s)	272
HpyCH4V	TGCA	1 cut(s)	439
HpyF10VI	GCNNNNNNNGC	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	272
Hsp92I	GRCGYC	1 cut(s)	266
Hsp92II	CATG	1 cut(s)	335
KflI	GGGWCCC	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	205, 502
LpnPI	CCDG	6 cut(s)	131, 261, 357, 384, 430, 435
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	400
MalI	GATC	2 cut(s)	207, 504
MboI	GATC	2 cut(s)	205, 502
MboII	GAAGA	4 cut(s)	81, 316, 343, 456
MluCI	AATT	1 cut(s)	479
MlyI	GAGTC	2 cut(s)	66, 118
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	5 cut(s)	95, 153, 292, 411, 500
MseI	TTAA	1 cut(s)	14
MslI	CAYNNNNRTG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	372
MssI	GTTTAAAC	1 cut(s)	15
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	1 cut(s)	201
NdeII	GATC	2 cut(s)	205, 502
NlaIII	CATG	1 cut(s)	335
NlaIV	GGNNCC	2 cut(s)	244, 245
PcsI	WCGNNNNNNNCGW	3 cut(s)	225, 234, 285
PfeI	GAWTC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	208
PleI	GAGTC	2 cut(s)	66, 118
PmeI	GTTTAAAC	1 cut(s)	15
PpsI	GAGTC	2 cut(s)	66, 118
PpuMI	RGGWCCY	1 cut(s)	243
PshAI	GACNNNNGTC	1 cut(s)	275
Psp5II	RGGWCCY	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	370
PspFI	CCCAGC	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	2 cut(s)	244, 245
PspPI	GGNCC	1 cut(s)	243
PspPPI	RGGWCCY	1 cut(s)	243
PvuI	CGATCG	1 cut(s)	208
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	330
SalI	GTCGAC	2 cut(s)	257, 268
SaqAI	TTAA	1 cut(s)	14
Sau3AI	GATC	2 cut(s)	205, 502
Sau96I	GGNCC	1 cut(s)	243
SchI	GAGTC	2 cut(s)	66, 118
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	3 cut(s)	87, 275, 393
SfaNI	GCATC	1 cut(s)	334
SgrDI	CGTCGACG	2 cut(s)	257, 268
SinI	GGWCC	1 cut(s)	243
SmiMI	CAYNNNNRTG	1 cut(s)	330
SmlI	CTYRAG	1 cut(s)	134
SmoI	CTYRAG	1 cut(s)	134
Sse9I	AATT	1 cut(s)	479
SsiI	CCGC	2 cut(s)	193, 202
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	1 cut(s)	370
TaaI	ACNGT	2 cut(s)	50, 256
TaiI	ACGT	1 cut(s)	275
TaqI	TCGA	5 cut(s)	228, 237, 258, 269, 505
TasI	AATT	1 cut(s)	479
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	14
Tru9I	TTAA	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	479
XmiI	GTMKAC	2 cut(s)	258, 269
XspI	CTAG	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.