Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

22717532 .. 22718140

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGAATGCACACGAAGCTGCATGCTGGGCTTTTACGACCGCAGCAGCAGTGGAAGGGATTGCATATATAAAGAGAAATAGCTCAGTTCAACTATCCGTGCAGCAAATCGTTGATTGTGATAAGTTGTCTAACCTAGGATGCAGTGGCGGTCTCGTAACGGATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTACCCATATGATGCTAAGGATGGAATATGCAATCTCGATAAGGCAAAACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGCCGCCGAATGACGAGTATGAGATGATAATGGCAGTATGCCAGCAGCCGGTAGCGGTCGATATTAAGACGACAGATGATTTTCAGCTTTACACTGGTGGAGTATTCAGTAAAGACTGTGGAAATGGGTTGATAGACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGTGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGAAGGTCATTGTTTCATCAATGCGAGAGCTTCTTATCCCATAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000323 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009987 GO:0012505 GO:0016787 GO:0019538 GO:0030163 GO:0031974 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0051603 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

202

Amino Acids

22.11

Weight (kDa)

5.2

Isoelectric Point (pI)

19.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	7 - 200	2.5e-59	Papain family cysteine protease
Peptidase_C1_2	PF03051	137 - 179	1.7e-07	Peptidase C1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	291
AciI	CCGC	4 cut(s)	39, 147, 296, 347
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	2 cut(s)	479, 527
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	1 cut(s)	89
AluBI	AGCT	4 cut(s)	17, 81, 379, 587
AluI	AGCT	4 cut(s)	17, 81, 379, 587
Alw26I	GTCTC	2 cut(s)	155, 452
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	5 cut(s)	17, 41, 44, 100, 337
AspA2I	CCTAGG	1 cut(s)	133
AsuHPI	GGTGA	2 cut(s)	187, 527
AvrII	CCTAGG	1 cut(s)	133
BauI	CACGAG	1 cut(s)	496
BbvI	GCAGC	5 cut(s)	4, 53, 56, 112, 349
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	484
BclI	TGATCA	1 cut(s)	537
BcoDI	GTCTC	2 cut(s)	155, 452
BfaI	CTAG	2 cut(s)	134, 549
BisI	GCNGC	6 cut(s)	18, 42, 45, 101, 296, 338
BlnI	CCTAGG	1 cut(s)	133
BlsI	GCNGC	6 cut(s)	19, 43, 46, 102, 297, 339
BmcAI	AGTACT	1 cut(s)	479
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	3 cut(s)	128, 151, 211
BmuI	ACTGGG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	225
BsaAI	YACGTR	1 cut(s)	175
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	340
Bse1I	ACTGG	4 cut(s)	198, 283, 391, 485
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	3 cut(s)	143, 166, 235
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	4 cut(s)	198, 283, 391, 485
BseXI	GCAGC	5 cut(s)	4, 53, 56, 112, 349
BseYI	CCCAGC	1 cut(s)	24
BsgI	GTGCAG	1 cut(s)	119
Bsh1236I	CGCG	1 cut(s)	291
Bsh1285I	CGRYCG	2 cut(s)	39, 351
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	2 cut(s)	39, 351
BsiSI	CCGG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	155, 452
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	537
BspACI	CCGC	4 cut(s)	39, 147, 296, 347
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	291
BspTNI	GGTCTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	340
BsrI	ACTGG	4 cut(s)	198, 283, 391, 485
BssAI	RCCGGY	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	1 cut(s)	537
BssSI	CACGAG	1 cut(s)	496
BssT1I	CCWWGG	1 cut(s)	133
Bst2BI	CACGAG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	410
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	5 cut(s)	22, 289, 293, 335, 554
BstDEI	CTNAG	2 cut(s)	82, 225
BstF5I	GGATG	3 cut(s)	143, 166, 235
BstFNI	CGCG	1 cut(s)	291
BstKTI	GATC	1 cut(s)	540
BstMAI	GTCTC	2 cut(s)	155, 452
BstMBI	GATC	1 cut(s)	537
BstMCI	CGRYCG	2 cut(s)	39, 351
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 26
BstNSI	RCATGY	1 cut(s)	24
BstSNI	TACGTA	1 cut(s)	175
BstUI	CGCG	1 cut(s)	291
BstV1I	GCAGC	5 cut(s)	4, 53, 56, 112, 349
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	3 cut(s)	143, 166, 235
BtsI	GCAGTG	2 cut(s)	54, 148
BtsIMutI	CAGTG	4 cut(s)	54, 148, 205, 384
Cac8I	GCNNGC	5 cut(s)	22, 289, 293, 335, 554
Cfr10I	RCCGGY	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	478, 526
CviAII	CATG	2 cut(s)	21, 529
CviJI	RGCY	7 cut(s)	17, 29, 81, 192, 340, 379, 587
CviKI_1	RGCY	7 cut(s)	17, 29, 81, 192, 340, 379, 587
CviQI	GTAC	2 cut(s)	478, 526
DdeI	CTNAG	2 cut(s)	82, 225
DpnI	GATC	1 cut(s)	539
DpnII	GATC	1 cut(s)	537
DraI	TTTAAA	1 cut(s)	265
Eco105I	TACGTA	1 cut(s)	175
Eco130I	CCWWGG	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	155
Eco57I	CTGAAG	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	133
EcoT22I	ATGCAT	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	133
FaeI	CATG	2 cut(s)	24, 532
FatI	CATG	2 cut(s)	20, 528
FauNDI	CATATG	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	537
Fnu4HI	GCNGC	6 cut(s)	18, 42, 45, 101, 296, 338
FokI	GGATG	3 cut(s)	150, 173, 242
Fsp4HI	GCNGC	6 cut(s)	18, 42, 45, 101, 296, 338
FspBI	CTAG	2 cut(s)	134, 549
GluI	GCNGC	6 cut(s)	18, 42, 45, 101, 296, 338
GsaI	CCCAGC	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	341
Hin1II	CATG	2 cut(s)	24, 532
HpaII	CCGG	1 cut(s)	341
HphI	GGTGA	2 cut(s)	187, 527
Hpy188I	TCNGA	1 cut(s)	542
Hpy188III	TCNNGA	2 cut(s)	245, 506
HpyAV	CCTTC	3 cut(s)	47, 512, 554
HpyCH4III	ACNGT	1 cut(s)	410
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	7 cut(s)	8, 20, 62, 100, 141, 164, 240
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 26
HpyF3I	CTNAG	2 cut(s)	82, 225
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	24, 532
Ksp22I	TGATCA	1 cut(s)	537
Kzo9I	GATC	1 cut(s)	537
LpnPI	CCDG	8 cut(s)	10, 211, 264, 347, 354, 372, 466, 491
Lsp1109I	GCAGC	5 cut(s)	4, 53, 56, 112, 349
LweI	GCATC	3 cut(s)	128, 151, 211
MaeI	CTAG	2 cut(s)	134, 549
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	539
MboI	GATC	1 cut(s)	537
MboII	GAAGA	1 cut(s)	502
MluCI	AATT	3 cut(s)	208, 260, 600
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	4 cut(s)	182, 203, 515, 536
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	3 cut(s)	264, 357, 474
MslI	CAYNNNNRTG	1 cut(s)	533
MspI	CCGG	1 cut(s)	341
Mva1269I	GAATGC	1 cut(s)	10
MvnI	CGCG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	14, 26
NdeI	CATATG	1 cut(s)	217
NdeII	GATC	1 cut(s)	537
NlaIII	CATG	2 cut(s)	24, 532
NsiI	ATGCAT	1 cut(s)	166
NspI	RCATGY	1 cut(s)	24
PaeI	GCATGC	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	192
PctI	GAATGC	1 cut(s)	10
PkrI	GCNGC	6 cut(s)	19, 43, 46, 102, 297, 339
Ppu21I	YACGTR	1 cut(s)	175
PspFI	CCCAGC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	479, 527
RsaNI	GTAC	2 cut(s)	478, 526
RseI	CAYNNNNRTG	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	264, 357, 474
SatI	GCNGC	6 cut(s)	18, 42, 45, 101, 296, 338
Sau3AI	GATC	1 cut(s)	537
ScaI	AGTACT	1 cut(s)	479
SetI	ASST	7 cut(s)	19, 83, 135, 177, 381, 565, 589
SfaNI	GCATC	3 cut(s)	128, 151, 211
SmiMI	CAYNNNNRTG	1 cut(s)	533
SnaBI	TACGTA	1 cut(s)	175
SphI	GCATGC	1 cut(s)	24
Sse9I	AATT	3 cut(s)	208, 260, 600
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	4 cut(s)	39, 147, 296, 347
SspMI	CTAG	2 cut(s)	134, 549
StuI	AGGCCT	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	133
TaaI	ACNGT	1 cut(s)	410
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	246, 351
TasI	AATT	3 cut(s)	208, 260, 600
TatI	WGTACW	1 cut(s)	477
TauI	GCSGC	1 cut(s)	298
Tru1I	TTAA	3 cut(s)	264, 357, 474
Tru9I	TTAA	3 cut(s)	264, 357, 474
TscAI	CASTG	4 cut(s)	54, 148, 205, 391
TseI	GCWGC	5 cut(s)	17, 41, 44, 100, 337
TspDTI	ATGAA	2 cut(s)	17, 562
TspGWI	ACGGA	4 cut(s)	85, 173, 196, 201
TspRI	CASTG	4 cut(s)	54, 148, 205, 391
XceI	RCATGY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	448
XmaJI	CCTAGG	1 cut(s)	133
XspI	CTAG	2 cut(s)	134, 549
ZrmI	AGTACT	1 cut(s)	479
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.