Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000288.1

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Forward (+)

82588 .. 84068

Gene Structure 1481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000288.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atggcaggttatgtcgatagcagaaaccagcttgccacaacaatcattttgattctcttctcatcgtcattggcccatgcaaacgacgtcgacgtggccgagatcttcaaccagtggatcgtccaacatcagagggtgtactcaaccgaggttcacaaacaaaaccgttttgagatattcaaagccaactgggaatacgtcgagaacttcaagaagatcggcaacaagacctataccttaggtctgaataagttctcggacttaagcccggaagaattcctgaaaacttatacctgcggcacagatcccactcccaccagtacccactcaaactcgacctccacatatcctcatgtcggcatggattatcttgactatgaggcatgctatgaatcaagggactggacggaagatggatatgtgagcccccctggggatcagactccgtactgtgcagcagtggaagggattgcatatataaagagaaatagctcagttcaactatccgtgcagcaaatcgttgattgtgataagttgtctaacctaggatgcagaggcggtctcgtaacggatgcatttgactacgtaaaacggaacggaggcctcaccagtgccgacaattacccatatgatgctaaggatggaatatgcaatctcgataaggcaaaacaatttaaagcaagtattactgggtttgctcgcgtgccgccggtttgctcgcgtgccgccgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

244

Amino Acids

27.27

Weight (kDa)

5.27

Isoelectric Point (pI)

31.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	302
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	2 cut(s)	702, 721
AciI	CCGC	4 cut(s)	297, 558, 707, 726
AclWI	GGATC	3 cut(s)	125, 299, 444
AcoI	YGGCCR	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	275
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	3 cut(s)	140, 322, 449
AfiI	CCNNNNNNNGG	2 cut(s)	356, 433
AflII	CTTAAG	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	109, 181, 211, 500
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	2 cut(s)	31, 492
AluI	AGCT	2 cut(s)	31, 492
Alw26I	GTCTC	1 cut(s)	566
AlwI	GGATC	3 cut(s)	125, 299, 444
AoxI	GGCC	3 cut(s)	72, 96, 601
ApeKI	GCWGC	2 cut(s)	455, 511
ApoI	RAATTY	1 cut(s)	275
Asp700I	GAANNNNTTC	1 cut(s)	251
AspA2I	CCTAGG	1 cut(s)	544
AspS9I	GGNCC	1 cut(s)	73
AsuC2I	CCSGG	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	598
AvrII	CCTAGG	1 cut(s)	544
AxyI	CCTNAGG	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	428
BbvI	GCAGC	2 cut(s)	467, 523
BccI	CCATC	2 cut(s)	407, 635
BciT130I	CCWGG	1 cut(s)	432
BcnI	CCSGG	1 cut(s)	269
BcoDI	GTCTC	1 cut(s)	566
BfaI	CTAG	1 cut(s)	545
BfrI	CTTAAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	302
BglII	AGATCT	1 cut(s)	102
BisI	GCNGC	5 cut(s)	298, 456, 512, 707, 726
BlnI	CCTAGG	1 cut(s)	544
BlsI	GCNGC	5 cut(s)	299, 457, 513, 708, 727
Bme1390I	CCNGG	2 cut(s)	269, 432
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	73
BmrFI	CCNGG	2 cut(s)	269, 432
BmrI	ACTGGG	2 cut(s)	199, 699
BmsI	GCATC	3 cut(s)	539, 562, 622
BmuI	ACTGGG	2 cut(s)	199, 699
BplI	GAGNNNNNCTC	2 cut(s)	546, 578
Bpu10I	CCTNAGC	1 cut(s)	636
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	586
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	566
BsaJI	CCNNGG	4 cut(s)	147, 430, 431, 544
BsaXI	ACNNNNNCTCC	2 cut(s)	323, 353
Bsc4I	CCNNNNNNNGG	2 cut(s)	356, 433
Bse118I	RCCGGY	1 cut(s)	709
Bse1I	ACTGG	6 cut(s)	112, 194, 318, 407, 609, 694
Bse21I	CCTNAGG	1 cut(s)	238
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	147, 430, 431, 544
BseGI	GGATG	3 cut(s)	554, 577, 646
BseLI	CCNNNNNNNGG	2 cut(s)	356, 433
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	6 cut(s)	112, 194, 318, 407, 609, 694
BseXI	GCAGC	2 cut(s)	467, 523
BsgI	GTGCAG	2 cut(s)	474, 530
Bsh1236I	CGCG	2 cut(s)	702, 721
BshFI	GGCC	3 cut(s)	74, 98, 603
BsiSI	CCGG	2 cut(s)	269, 710
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	356, 433
BsmAI	GTCTC	1 cut(s)	566
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	3 cut(s)	74, 98, 603
Bso31I	GGTCTC	1 cut(s)	566
Bsp1286I	GDGCHC	1 cut(s)	428
Bsp143I	GATC	5 cut(s)	102, 117, 216, 304, 436
BspACI	CCGC	4 cut(s)	297, 558, 707, 726
BspANI	GGCC	3 cut(s)	74, 98, 603
BspCNI	CTCAG	1 cut(s)	506
BspFNI	CGCG	2 cut(s)	702, 721
BspMI	ACCTGC	1 cut(s)	302
BspPI	GGATC	3 cut(s)	125, 299, 444
BspTI	CTTAAG	1 cut(s)	262
BspTNI	GGTCTC	1 cut(s)	566
BsrFI	RCCGGY	1 cut(s)	709
BsrI	ACTGG	6 cut(s)	112, 194, 318, 407, 609, 694
BssAI	RCCGGY	1 cut(s)	709
BssECI	CCNNGG	4 cut(s)	147, 430, 431, 544
BssMI	GATC	5 cut(s)	102, 117, 216, 304, 436
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	167, 452
Bst6I	CTCTTC	1 cut(s)	62
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	586
BstC8I	GCNNGC	6 cut(s)	33, 385, 700, 704, 719, 723
BstDEI	CTNAG	3 cut(s)	238, 493, 636
BstF5I	GGATG	3 cut(s)	554, 577, 646
BstFNI	CGCG	2 cut(s)	702, 721
BstKTI	GATC	5 cut(s)	105, 120, 219, 307, 439
BstMAI	GTCTC	1 cut(s)	566
BstMBI	GATC	5 cut(s)	102, 117, 216, 304, 436
BstNI	CCWGG	1 cut(s)	432
BstNSI	RCATGY	1 cut(s)	387
BstSCI	CCNGG	2 cut(s)	267, 430
BstSNI	TACGTA	1 cut(s)	586
BstUI	CGCG	2 cut(s)	702, 721
BstV1I	GCAGC	2 cut(s)	467, 523
BstX2I	RGATCY	2 cut(s)	102, 304
BstYI	RGATCY	2 cut(s)	102, 304
Bsu36I	CCTNAGG	1 cut(s)	238
BsuRI	GGCC	3 cut(s)	74, 98, 603
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	3 cut(s)	554, 577, 646
BtsI	GCAGTG	1 cut(s)	465
BtsIMutI	CAGTG	3 cut(s)	119, 465, 616
BveI	ACCTGC	1 cut(s)	302
Cac8I	GCNNGC	6 cut(s)	33, 385, 700, 704, 719, 723
Cfr10I	RCCGGY	1 cut(s)	709
Cfr13I	GGNCC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	139, 321, 448
CviAII	CATG	4 cut(s)	77, 353, 361, 384
CviJI	RGCY	8 cut(s)	31, 74, 98, 185, 267, 426, 492, 603
CviKI_1	RGCY	8 cut(s)	31, 74, 98, 185, 267, 426, 492, 603
CviQI	GTAC	3 cut(s)	139, 321, 448
DdeI	CTNAG	3 cut(s)	238, 493, 636
DpnI	GATC	5 cut(s)	104, 119, 218, 306, 438
DpnII	GATC	5 cut(s)	102, 117, 216, 304, 436
DraI	TTTAAA	1 cut(s)	676
EaeI	YGGCCR	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco105I	TACGTA	1 cut(s)	586
Eco130I	CCWWGG	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	603
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	544
EcoT22I	ATGCAT	1 cut(s)	577
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	4 cut(s)	80, 356, 364, 387
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	4 cut(s)	76, 352, 360, 383
FauNDI	CATATG	1 cut(s)	628
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	5 cut(s)	298, 456, 512, 707, 726
FokI	GGATG	3 cut(s)	561, 584, 653
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	298, 456, 512, 707, 726
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	5 cut(s)	298, 456, 512, 707, 726
HaeIII	GGCC	3 cut(s)	74, 98, 603
HapII	CCGG	2 cut(s)	269, 710
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	80, 356, 364, 387
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	3 cut(s)	52, 392, 442
HpaII	CCGG	2 cut(s)	269, 710
HphI	GGTGA	1 cut(s)	598
Hpy166II	GTNNAC	3 cut(s)	91, 139, 154
Hpy188I	TCNGA	4 cut(s)	132, 246, 259, 441
Hpy188III	TCNNGA	5 cut(s)	202, 211, 280, 371, 656
Hpy8I	GTNNAC	3 cut(s)	91, 139, 154
Hpy99I	CGWCG	4 cut(s)	89, 92, 95, 203
HpyAV	CCTTC	1 cut(s)	458
HpyCH4III	ACNGT	2 cut(s)	167, 452
HpyCH4IV	ACGT	4 cut(s)	87, 93, 198, 585
HpyCH4V	TGCA	7 cut(s)	80, 455, 473, 511, 552, 575, 651
HpyF3I	CTNAG	3 cut(s)	238, 493, 636
HpySE526I	ACGT	4 cut(s)	87, 93, 198, 585
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	80, 356, 364, 387
Kzo9I	GATC	5 cut(s)	102, 117, 216, 304, 436
Lsp1109I	GCAGC	2 cut(s)	467, 523
LweI	GCATC	3 cut(s)	539, 562, 622
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	4 cut(s)	87, 93, 198, 585
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	5 cut(s)	104, 119, 218, 306, 438
MboI	GATC	5 cut(s)	102, 117, 216, 304, 436
MboII	GAAGA	5 cut(s)	49, 97, 226, 284, 422
MflI	RGATCY	2 cut(s)	102, 304
MhlI	GDGCHC	1 cut(s)	428
MluCI	AATT	3 cut(s)	275, 619, 671
MlyI	GAGTC	1 cut(s)	436
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	8 cut(s)	126, 142, 349, 360, 373, 548, 593, 614
Mph1103I	ATGCAT	1 cut(s)	577
MroXI	GAANNNNTTC	1 cut(s)	251
MseI	TTAA	2 cut(s)	263, 675
MspCI	CTTAAG	1 cut(s)	262
MspI	CCGG	2 cut(s)	269, 710
MspR9I	CCNGG	2 cut(s)	269, 432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	2 cut(s)	702, 721
NciI	CCSGG	1 cut(s)	269
NdeI	CATATG	1 cut(s)	628
NdeII	GATC	5 cut(s)	102, 117, 216, 304, 436
NlaIII	CATG	4 cut(s)	80, 356, 364, 387
NmeAIII	GCCGAG	1 cut(s)	124
NsiI	ATGCAT	1 cut(s)	577
NspI	RCATGY	1 cut(s)	387
PaeI	GCATGC	1 cut(s)	387
PasI	CCCWGGG	1 cut(s)	431
PceI	AGGCCT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	2 cut(s)	90, 96
PdmI	GAANNNNTTC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	52, 392
PkrI	GCNGC	5 cut(s)	299, 457, 513, 708, 727
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Ppu21I	YACGTR	1 cut(s)	586
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspPI	GGNCC	1 cut(s)	73
PsuI	RGATCY	2 cut(s)	102, 304
RsaI	GTAC	3 cut(s)	140, 322, 449
RsaNI	GTAC	3 cut(s)	139, 321, 448
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	263, 675
SatI	GCNGC	5 cut(s)	298, 456, 512, 707, 726
Sau3AI	GATC	5 cut(s)	102, 117, 216, 304, 436
Sau96I	GGNCC	1 cut(s)	73
SchI	GAGTC	1 cut(s)	436
ScrFI	CCNGG	2 cut(s)	269, 432
SduI	GDGCHC	1 cut(s)	428
SfaNI	GCATC	3 cut(s)	539, 562, 622
SgrDI	CGTCGACG	1 cut(s)	89
SmlI	CTYRAG	1 cut(s)	262
SmoI	CTYRAG	1 cut(s)	262
SnaBI	TACGTA	1 cut(s)	586
SphI	GCATGC	1 cut(s)	387
Sse9I	AATT	3 cut(s)	275, 619, 671
SseBI	AGGCCT	1 cut(s)	603
SsiI	CCGC	4 cut(s)	297, 558, 707, 726
SspMI	CTAG	1 cut(s)	545
StuI	AGGCCT	1 cut(s)	603
StyD4I	CCNGG	2 cut(s)	267, 430
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	2 cut(s)	167, 452
TaiI	ACGT	4 cut(s)	90, 96, 201, 588
TaqI	TCGA	5 cut(s)	15, 90, 201, 335, 657
TasI	AATT	3 cut(s)	275, 619, 671
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	3 cut(s)	300, 709, 728
TfiI	GAWTC	2 cut(s)	52, 392
Tru1I	TTAA	2 cut(s)	263, 675
Tru9I	TTAA	2 cut(s)	263, 675
TscAI	CASTG	3 cut(s)	119, 465, 616
TseI	GCWGC	2 cut(s)	455, 511
TspDTI	ATGAA	1 cut(s)	405
TspGWI	ACGGA	6 cut(s)	422, 435, 496, 584, 607, 612
TspRI	CASTG	3 cut(s)	119, 465, 616
Vha464I	CTTAAG	1 cut(s)	262
XapI	RAATTY	1 cut(s)	275
XceI	RCATGY	1 cut(s)	387
XmaJI	CCTAGG	1 cut(s)	544
XmiI	GTMKAC	1 cut(s)	90
XmnI	GAANNNNTTC	1 cut(s)	251
XspI	CTAG	1 cut(s)	545
ZraI	GACGTC	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.