Rw3G018970

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003327
Physical Location & Seq
Reverse (-)
21375196 .. 21378823
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018970.1

Sequence Viewer

Length: 1134 bp
ATGGCAGGTTATGTCGATAGCAGAAACCAGCTTACCACAACAATCATTTTGATTCTCTTCTCATCGTCATTGGCCCATGCAAACGACGTCGACGTGGCCGAGATCTTCAACCAGTGGATCGTCCAACATCAGAGGGTGTACTCAACCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGCCAACTGGGAATACGTCGAGAACTTCAAGAAGATCGGCAACAAGACCTATACCTTGGGTCTGAAAAAGTTCTCGGACTTAAGCCCGGAAGAATTCCTGGAAACTTATAGCTGCGGCACAGATCCCACTCCCACCAGTACCCACTCAAACTCGACCTCCACATATCCTCATGTCGGCATGGATTATCTTGACTATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGATATGTGAGCCCCCCTGGGAATCAGACTCCGTACTGTGGATGGAATATGCAATCTCGAATTCTCGATAAGGCAAGACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGCCGCCGAATGACGAGTATGAGATGATAATGGCAGTATGCCAGCAGCCGGTAGCGGCCGATATTAAGACGACAGATGATTTTCAGTTTTACACTGGTGGAGTATTCAGTAAAGACAGTGGAAATGGGGTGATAAACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGTGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGGAGATACCACTGAAGACAGAACATTTATATATGACAGTACTAGAGGAATGGGGCGACGACTCATCCTTGACCTCAATGTCAAGAAGATAATTGAATCCTCGTACTACTTGACGCTCACCCTTGAGAACGCTCTGGAATACCAACTTCTTGCGGGATTGTTTGCTGATTTCAGAAACTGCAAACTCCGCGATCTCTTTCAGATAGGGTTTGTTGAGATTTCCGATGGGACCCCAGCCACCGGAGAGCCAGAGTTGGTCAGCAGCGATGAAATGGGAGAGGAGGAGGAGGAGAAGGCAGTGACGCATCTTTATGGTGACGTTGATTTTCTTCGTTCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

377

Amino Acids

42.85

Weight (kDa)

4.78

Isoelectric Point (pI)

35.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 36 - 93 2.1e-16 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 146 - 264 3.6e-26 Papain family cysteine protease
Peptidase_C1_2 PF03051 214 - 257 8.3e-07 Peptidase C1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 869
AatII GACGTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 90
AccII CGCG 2 cut(s) 525, 981
AciI CCGC 5 cut(s) 297, 530, 581, 944, 979
AclWI GGATC 2 cut(s) 125, 299
AcoI YGGCCR 2 cut(s) 96, 582
AcsI RAATTY 2 cut(s) 275, 474
AcuI CTGAAG 2 cut(s) 743, 825
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 7 cut(s) 140, 322, 449, 713, 761, 832, 896
AfiI CCNNNNNNNGG 4 cut(s) 356, 452, 574, 1031
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 5 cut(s) 109, 181, 211, 887, 1128
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 2 cut(s) 279, 430
AluBI AGCT 2 cut(s) 31, 294
AluI AGCT 2 cut(s) 31, 294
Alw26I GTCTC 1 cut(s) 686
AlwI GGATC 2 cut(s) 125, 299
AlwNI CAGNNNCTG 1 cut(s) 969
AoxI GGCC 3 cut(s) 72, 96, 582
ApeKI GCWGC 3 cut(s) 294, 571, 1053
ApoI RAATTY 2 cut(s) 275, 474
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 2 cut(s) 73, 1020
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 4 cut(s) 667, 761, 901, 1118
AvaII GGWCC 1 cut(s) 1020
BanII GRGCYC 1 cut(s) 428
BauI CACGAG 1 cut(s) 730
BbsI GAAGAC 1 cut(s) 813
BbvI GCAGC 3 cut(s) 281, 583, 1065
BccI CCATC 3 cut(s) 407, 450, 1010
BceAI ACGGC 1 cut(s) 718
BciT130I CCWGG 2 cut(s) 281, 432
BclI TGATCA 1 cut(s) 771
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 686
BfaI CTAG 2 cut(s) 783, 834
BfrI CTTAAG 1 cut(s) 262
BglII AGATCT 1 cut(s) 102
BisI GCNGC 6 cut(s) 295, 298, 530, 572, 582, 1054
BlsI GCNGC 6 cut(s) 296, 299, 531, 573, 583, 1055
BmcAI AGTACT 2 cut(s) 713, 832
Bme1390I CCNGG 3 cut(s) 269, 281, 432
Bme18I GGWCC 1 cut(s) 1020
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 2 cut(s) 73, 1020
BmiI GGNNCC 2 cut(s) 1021, 1022
BmrFI CCNGG 3 cut(s) 269, 281, 432
BmrI ACTGGG 2 cut(s) 199, 522
BmsI GCATC 1 cut(s) 1105
BmuI ACTGGG 2 cut(s) 199, 522
BpiI GAAGAC 1 cut(s) 813
BpuEI CTTGAG 1 cut(s) 935
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 147, 237, 430, 431
BsaWI WCCGGW 1 cut(s) 1031
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 4 cut(s) 356, 452, 574, 1031
Bse118I RCCGGY 1 cut(s) 574
Bse1I ACTGG 7 cut(s) 112, 194, 318, 407, 517, 625, 719
BseBI CCWGG 2 cut(s) 281, 432
BseDI CCNNGG 4 cut(s) 147, 237, 430, 431
BseGI GGATG 2 cut(s) 461, 855
BseLI CCNNNNNNNGG 4 cut(s) 356, 452, 574, 1031
BseNI ACTGG 7 cut(s) 112, 194, 318, 407, 517, 625, 719
BseRI GAGGAG 5 cut(s) 807, 1085, 1088, 1091, 1094
BseX3I CGGCCG 1 cut(s) 582
BseXI GCAGC 3 cut(s) 281, 583, 1065
BseYI CCCAGC 1 cut(s) 1024
Bsh1236I CGCG 2 cut(s) 525, 981
Bsh1285I CGRYCG 1 cut(s) 585
BshFI GGCC 3 cut(s) 74, 98, 584
BsiEI CGRYCG 1 cut(s) 585
BsiSI CCGG 3 cut(s) 269, 575, 1032
BslFI GGGAC 2 cut(s) 413, 1033
BslI CCNNNNNNNGG 4 cut(s) 356, 452, 574, 1031
BsmAI GTCTC 1 cut(s) 686
BsmFI GGGAC 2 cut(s) 413, 1033
BsnI GGCC 3 cut(s) 74, 98, 584
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 6 cut(s) 102, 117, 216, 304, 771, 982
BspACI CCGC 5 cut(s) 297, 530, 581, 944, 979
BspANI GGCC 3 cut(s) 74, 98, 584
BspFNI CGCG 2 cut(s) 525, 981
BspLI GGNNCC 2 cut(s) 1021, 1022
BspPI GGATC 2 cut(s) 125, 299
BspTI CTTAAG 1 cut(s) 262
BsrFI RCCGGY 1 cut(s) 574
BsrI ACTGG 7 cut(s) 112, 194, 318, 407, 517, 625, 719
BssAI RCCGGY 1 cut(s) 574
BssECI CCNNGG 4 cut(s) 147, 237, 430, 431
BssMI GATC 6 cut(s) 102, 117, 216, 304, 771, 982
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 730
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 730
Bst2UI CCWGG 2 cut(s) 281, 432
Bst4CI ACNGT 4 cut(s) 167, 452, 644, 830
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 5 cut(s) 385, 523, 527, 569, 788
BstF5I GGATG 2 cut(s) 461, 855
BstFNI CGCG 2 cut(s) 525, 981
BstKTI GATC 6 cut(s) 105, 120, 219, 307, 774, 985
BstMAI GTCTC 1 cut(s) 686
BstMBI GATC 6 cut(s) 102, 117, 216, 304, 771, 982
BstMCI CGRYCG 1 cut(s) 585
BstMWI GCNNNNNNNGC 1 cut(s) 978
BstNI CCWGG 2 cut(s) 281, 432
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 3 cut(s) 267, 279, 430
BstUI CGCG 2 cut(s) 525, 981
BstV1I GCAGC 3 cut(s) 281, 583, 1065
BstV2I GAAGAC 1 cut(s) 813
BstX2I RGATCY 2 cut(s) 102, 304
BstYI RGATCY 2 cut(s) 102, 304
BstZI CGGCCG 1 cut(s) 582
BsuRI GGCC 3 cut(s) 74, 98, 584
BtgZI GCGATG 1 cut(s) 1071
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 2 cut(s) 461, 855
BtsI GCAGTG 1 cut(s) 1095
BtsIMutI CAGTG 5 cut(s) 119, 618, 649, 801, 1095
Cac8I GCNNGC 5 cut(s) 385, 523, 527, 569, 788
CaiI CAGNNNCTG 1 cut(s) 969
Cfr10I RCCGGY 1 cut(s) 574
Cfr13I GGNCC 2 cut(s) 73, 1020
CseI GACGC 2 cut(s) 913, 1102
Csp6I GTAC 7 cut(s) 139, 321, 448, 712, 760, 831, 895
CviAII CATG 5 cut(s) 77, 353, 361, 384, 763
CviQI GTAC 7 cut(s) 139, 321, 448, 712, 760, 831, 895
DpnI GATC 6 cut(s) 104, 119, 218, 306, 773, 984
DpnII GATC 6 cut(s) 102, 117, 216, 304, 771, 982
DraI TTTAAA 1 cut(s) 499
DrdI GACNNNNNNGTC 1 cut(s) 869
DseDI GACNNNNNNGTC 1 cut(s) 869
EaeI YGGCCR 2 cut(s) 96, 582
EagI CGGCCG 1 cut(s) 582
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
EclXI CGGCCG 1 cut(s) 582
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 428
Eco47I GGWCC 1 cut(s) 1020
Eco52I CGGCCG 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 743, 825
EcoO109I RGGNCCY 1 cut(s) 1020
EcoRI GAATTC 2 cut(s) 275, 474
EcoRII CCWGG 2 cut(s) 279, 430
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 5 cut(s) 80, 356, 364, 387, 766
FaqI GGGAC 2 cut(s) 413, 1033
FatI CATG 5 cut(s) 76, 352, 360, 383, 762
FauI CCCGC 1 cut(s) 937
FbaI TGATCA 1 cut(s) 771
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 6 cut(s) 295, 298, 530, 572, 582, 1054
FokI GGATG 2 cut(s) 468, 842
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 6 cut(s) 295, 298, 530, 572, 582, 1054
FspBI CTAG 2 cut(s) 783, 834
GluI GCNGC 6 cut(s) 295, 298, 530, 572, 582, 1054
GsaI CCCAGC 1 cut(s) 1028
HaeIII GGCC 3 cut(s) 74, 98, 584
HapII CCGG 3 cut(s) 269, 575, 1032
HgaI GACGC 2 cut(s) 913, 1102
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 5 cut(s) 80, 356, 364, 387, 766
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 6 cut(s) 52, 392, 436, 442, 852, 887
HpaII CCGG 3 cut(s) 269, 575, 1032
HphI GGTGA 4 cut(s) 667, 761, 901, 1118
Hpy166II GTNNAC 3 cut(s) 91, 139, 154
Hpy188I TCNGA 8 cut(s) 132, 246, 259, 441, 776, 965, 993, 1015
Hpy188III TCNNGA 8 cut(s) 202, 211, 371, 471, 479, 740, 874, 926
Hpy8I GTNNAC 3 cut(s) 91, 139, 154
Hpy99I CGWCG 5 cut(s) 89, 92, 95, 203, 852
HpyAV CCTTC 2 cut(s) 746, 1078
HpyCH4III ACNGT 4 cut(s) 167, 452, 644, 830
HpyCH4IV ACGT 4 cut(s) 87, 93, 198, 1110
HpyCH4V TGCA 3 cut(s) 80, 466, 972
HpyF10VI GCNNNNNNNGC 1 cut(s) 978
HpySE526I ACGT 4 cut(s) 87, 93, 198, 1110
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 5 cut(s) 80, 356, 364, 387, 766
KflI GGGWCCC 1 cut(s) 1020
Ksp22I TGATCA 1 cut(s) 771
Kzo9I GATC 6 cut(s) 102, 117, 216, 304, 771, 982
Lsp1109I GCAGC 3 cut(s) 281, 583, 1065
LweI GCATC 1 cut(s) 1105
MaeI CTAG 2 cut(s) 783, 834
MaeII ACGT 4 cut(s) 87, 93, 198, 1110
MaeIII GTNAC 2 cut(s) 1090, 1106
MalI GATC 6 cut(s) 104, 119, 218, 306, 773, 984
MboI GATC 6 cut(s) 102, 117, 216, 304, 771, 982
MboII GAAGA 9 cut(s) 49, 97, 226, 284, 422, 736, 818, 889, 1112
MflI RGATCY 2 cut(s) 102, 304
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 4 cut(s) 275, 474, 494, 882
MlyI GAGTC 2 cut(s) 436, 846
MmeI TCCRAC 2 cut(s) 148, 661
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 263, 498, 591, 708
MslI CAYNNNNRTG 2 cut(s) 767, 1101
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 3 cut(s) 269, 575, 1032
MspR9I CCNGG 3 cut(s) 269, 281, 432
MvaI CCWGG 2 cut(s) 281, 432
MvnI CGCG 2 cut(s) 525, 981
MwoI GCNNNNNNNGC 1 cut(s) 978
NciI CCSGG 1 cut(s) 269
NdeII GATC 6 cut(s) 102, 117, 216, 304, 771, 982
NlaIII CATG 5 cut(s) 80, 356, 364, 387, 766
NlaIV GGNNCC 2 cut(s) 1021, 1022
NmeAIII GCCGAG 1 cut(s) 124
NmuCI GTSAC 2 cut(s) 1090, 1106
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PasI CCCWGGG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 96
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 4 cut(s) 52, 392, 436, 887
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 6 cut(s) 296, 299, 531, 573, 583, 1055
PleI GAGTC 2 cut(s) 436, 846
PpsI GAGTC 2 cut(s) 436, 846
PpuMI RGGWCCY 1 cut(s) 1020
Psp5II RGGWCCY 1 cut(s) 1020
Psp6I CCWGG 2 cut(s) 279, 430
PspFI CCCAGC 1 cut(s) 1024
PspGI CCWGG 2 cut(s) 279, 430
PspN4I GGNNCC 2 cut(s) 1021, 1022
PspPI GGNCC 2 cut(s) 73, 1020
PspPPI RGGWCCY 1 cut(s) 1020
PstNI CAGNNNCTG 1 cut(s) 969
PsuI RGATCY 2 cut(s) 102, 304
RsaI GTAC 7 cut(s) 140, 322, 449, 713, 761, 832, 896
RsaNI GTAC 7 cut(s) 139, 321, 448, 712, 760, 831, 895
RseI CAYNNNNRTG 2 cut(s) 767, 1101
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 263, 498, 591, 708
SatI GCNGC 6 cut(s) 295, 298, 530, 572, 582, 1054
Sau3AI GATC 6 cut(s) 102, 117, 216, 304, 771, 982
Sau96I GGNCC 2 cut(s) 73, 1020
ScaI AGTACT 2 cut(s) 713, 832
SchI GAGTC 2 cut(s) 436, 846
ScrFI CCNGG 3 cut(s) 269, 281, 432
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 1 cut(s) 1105
SgrDI CGTCGACG 1 cut(s) 89
SinI GGWCC 1 cut(s) 1020
SmiMI CAYNNNNRTG 2 cut(s) 767, 1101
SmlI CTYRAG 2 cut(s) 262, 914
SmoI CTYRAG 2 cut(s) 262, 914
SphI GCATGC 1 cut(s) 387
Sse9I AATT 4 cut(s) 275, 474, 494, 882
SsiI CCGC 5 cut(s) 297, 530, 581, 944, 979
SspMI CTAG 2 cut(s) 783, 834
StyD4I CCNGG 3 cut(s) 267, 279, 430
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 4 cut(s) 167, 452, 644, 830
TaiI ACGT 4 cut(s) 90, 96, 201, 1113
TaqI TCGA 6 cut(s) 15, 90, 201, 335, 472, 480
TasI AATT 4 cut(s) 275, 474, 494, 882
TatI WGTACW 3 cut(s) 138, 711, 830
TauI GCSGC 3 cut(s) 300, 532, 584
TfiI GAWTC 4 cut(s) 52, 392, 436, 887
Tru1I TTAA 4 cut(s) 263, 498, 591, 708
Tru9I TTAA 4 cut(s) 263, 498, 591, 708
TscAI CASTG 5 cut(s) 119, 625, 649, 808, 1095
TseFI GTSAC 2 cut(s) 1090, 1106
TseI GCWGC 3 cut(s) 294, 571, 1053
Tsp45I GTSAC 2 cut(s) 1090, 1106
TspDTI ATGAA 2 cut(s) 405, 1074
TspGWI ACGGA 2 cut(s) 422, 435
TspRI CASTG 5 cut(s) 119, 625, 649, 808, 1095
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 1020
XapI RAATTY 2 cut(s) 275, 474
XceI RCATGY 1 cut(s) 387
XcmI CCANNNNNNNNNTGG 1 cut(s) 682
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 783, 834
ZraI GACGTC 1 cut(s) 88
ZrmI AGTACT 2 cut(s) 713, 832
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.