Rh5DG072700

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003327
Physical Location & Seq
Forward (+)
6323442 .. 6326766
3325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG072700.1

Sequence Viewer

Length: 1068 bp
ATGGGTTATGTCGATAACAGAAACCTGCTTACCGTAACGATCATGATGATTATCTTCTCATCAACATTTGGCCTTAGAAAACTGAACGGTCGGCGGGATGATGCGAACGACGATGTTGCCAAGATCTTCAACGACTGGATCATACAACACCAAAGGATGTACTTGAACGAGTCTCACAAAAATGAGCGCTTTCAGATATTCAAAACCAACTGGGAATATGTCGAAAACTTCAAGAAGCTCAGTAATAAGACCTATACTGTTGGTCTCAATGAGTTCTCTGACTTAACCATGGAAGAATTCCAGGTAACTTATGGTTGCAGCAGAGATCCCATTCCCAACAGTCTCCACTTAAACTCGACCTCCTCATCTCCTGATGTCAGCATCGAGTATCTTGACTATGATACATGCGATGAAACAATCGACTGGACGAAACAAGGATATGTGTCCCGCCCTGGGTTGCAAACAAAATGCGGTTCATGCTGGGCATTTGCGGCCGTAGCAGGAGTGGAAGGGATTGCACAAATCAGGAACAGTGAAAACCCAACTCGACTGTCCGTGCAGCAGCTCGTAGACTGTGATAAAAAGTATAACGAAGGCTGCGAAGGTGGTCTCGCAATAGATGCCTATGACTACATACTAAGGAACGGAGGTATCACCAGTGCCGAAAATTACCCATATACTGATTCGGAAGGACAGTGCGACCTCGCTAAGGAAAAACAATTTGAGGTAAGTATCACTGGGTTTACTCTTGTGCCGCCGAATGACGAGTTTGAGCTGATGAAGTCAGTATGCATGCAGCCTGTAACGGCCAGAATTACGGTGACAAATGGACTTCGGCACTACACTGGTGGAGTATTTAGTGAAGAGTGTGGAACGGAGTTAGGGCACGCTGTGACCATTGTTGGAATGGGGAAGACTGATGACGGCGTTAAGTATTGGAAATTGATGAATTCGTGGGGTGAGGGGTGGGGCGAAGGAGGGTATATTAGAATTCTCAGAGGAACTGGCAAGCCAGAAGGTCATTGTGGAATCAATATTGAACCTTCTTATCCCGATATTGGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

355

Amino Acids

39.86

Weight (kDa)

4.86

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 43 - 100 1.4e-15 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 138 - 351 1.5e-63 Papain family cysteine protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AccI GTMKAC 1 cut(s) 570
AciI CCGC 5 cut(s) 94, 448, 471, 491, 755
AclWI GGATC 2 cut(s) 146, 320
AcoI YGGCCR 2 cut(s) 492, 807
AcsI RAATTY 3 cut(s) 296, 949, 990
AdeI CACNNNGTG 1 cut(s) 892
AfaI GTAC 1 cut(s) 161
AfeI AGCGCT 1 cut(s) 188
AfiI CCNNNNNNNGG 3 cut(s) 453, 709, 1058
AgsI TTSAA 5 cut(s) 130, 166, 202, 232, 1040
AjnI CCWGG 2 cut(s) 300, 451
AluBI AGCT 3 cut(s) 238, 565, 775
AluI AGCT 3 cut(s) 238, 565, 775
Alw26I GTCTC 4 cut(s) 177, 269, 347, 614
AlwI GGATC 2 cut(s) 146, 320
Aor51HI AGCGCT 1 cut(s) 188
AoxI GGCC 3 cut(s) 70, 492, 807
ApeKI GCWGC 5 cut(s) 318, 559, 562, 597, 796
ApoI RAATTY 3 cut(s) 296, 949, 990
AspLEI GCGC 1 cut(s) 189
AsuHPI GGTGA 3 cut(s) 646, 832, 971
BaeGI GKGCMC 1 cut(s) 888
BaeI ACNNNNGTAYC 2 cut(s) 634, 667
BbsI GAAGAC 1 cut(s) 920
BbvI GCAGC 5 cut(s) 330, 571, 574, 584, 808
BceAI ACGGC 3 cut(s) 479, 822, 940
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BciT130I CCWGG 2 cut(s) 302, 453
BcoDI GTCTC 4 cut(s) 177, 269, 347, 614
BfoI RGCGCY 1 cut(s) 190
BfuAI ACCTGC 1 cut(s) 33
BglII AGATCT 1 cut(s) 123
BisI GCNGC 7 cut(s) 319, 492, 560, 563, 598, 755, 797
BlsI GCNGC 7 cut(s) 320, 493, 561, 564, 599, 756, 798
Bme1390I CCNGG 2 cut(s) 302, 453
BmrFI CCNGG 2 cut(s) 302, 453
BmrI ACTGGG 2 cut(s) 220, 747
BmsI GCATC 3 cut(s) 91, 390, 610
BmuI ACTGGG 2 cut(s) 220, 747
BpiI GAAGAC 1 cut(s) 920
Bpu10I CCTNAGC 1 cut(s) 708
BsaBI GATNNNNATC 1 cut(s) 50
BsaI GGTCTC 2 cut(s) 269, 614
BsaJI CCNNGG 3 cut(s) 288, 451, 452
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 3 cut(s) 453, 709, 1058
Bse1I ACTGG 7 cut(s) 140, 215, 428, 657, 742, 850, 1009
Bse8I GATNNNNATC 1 cut(s) 50
BseBI CCWGG 2 cut(s) 302, 453
BseDI CCNNGG 3 cut(s) 288, 451, 452
BseGI GGATG 2 cut(s) 103, 162
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 3 cut(s) 453, 709, 1058
BseMII CTCAG 2 cut(s) 253, 1009
BseNI ACTGG 7 cut(s) 140, 215, 428, 657, 742, 850, 1009
BseRI GAGGAG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 888
BseX3I CGGCCG 1 cut(s) 492
BseXI GCAGC 5 cut(s) 330, 571, 574, 584, 808
BseYI CCCAGC 1 cut(s) 480
BsgI GTGCAG 1 cut(s) 578
Bsh1285I CGRYCG 2 cut(s) 91, 495
BshFI GGCC 3 cut(s) 72, 494, 809
BsiEI CGRYCG 2 cut(s) 91, 495
BslFI GGGAC 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 453, 709, 1058
BsmAI GTCTC 4 cut(s) 177, 269, 347, 614
BsmFI GGGAC 1 cut(s) 430
BsnI GGCC 3 cut(s) 72, 494, 809
Bso31I GGTCTC 2 cut(s) 269, 614
Bsp1286I GDGCHC 1 cut(s) 888
Bsp143I GATC 4 cut(s) 39, 123, 138, 325
Bsp19I CCATGG 1 cut(s) 288
BspACI CCGC 5 cut(s) 94, 448, 471, 491, 755
BspANI GGCC 3 cut(s) 72, 494, 809
BspCNI CTCAG 2 cut(s) 252, 1008
BspHI TCATGA 1 cut(s) 42
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 2 cut(s) 146, 320
BspTNI GGTCTC 2 cut(s) 269, 614
BsrI ACTGG 7 cut(s) 140, 215, 428, 657, 742, 850, 1009
BssECI CCNNGG 3 cut(s) 288, 451, 452
BssMI GATC 4 cut(s) 39, 123, 138, 325
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 2 cut(s) 302, 453
Bst4CI ACNGT 9 cut(s) 34, 89, 259, 341, 533, 552, 575, 696, 820
Bst6I CTCTTC 1 cut(s) 858
BstAPI GCANNNNNTGC 1 cut(s) 620
BstC8I GCNNGC 3 cut(s) 794, 888, 1010
BstDEI CTNAG 5 cut(s) 74, 239, 638, 708, 995
BstDSI CCRYGG 1 cut(s) 288
BstENI CCTNNNNNAGG 1 cut(s) 707
BstF5I GGATG 2 cut(s) 103, 162
BstH2I RGCGCY 1 cut(s) 190
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 4 cut(s) 42, 126, 141, 328
BstMAI GTCTC 4 cut(s) 177, 269, 347, 614
BstMBI GATC 4 cut(s) 39, 123, 138, 325
BstMCI CGRYCG 2 cut(s) 91, 495
BstMWI GCNNNNNNNGC 4 cut(s) 477, 491, 497, 620
BstNI CCWGG 2 cut(s) 302, 453
BstNSI RCATGY 2 cut(s) 408, 796
BstSCI CCNGG 2 cut(s) 300, 451
BstSLI GKGCMC 1 cut(s) 888
BstV1I GCAGC 5 cut(s) 330, 571, 574, 584, 808
BstV2I GAAGAC 1 cut(s) 920
BstX2I RGATCY 2 cut(s) 123, 325
BstYI RGATCY 2 cut(s) 123, 325
BstZI CGGCCG 1 cut(s) 492
BsuRI GGCC 3 cut(s) 72, 494, 809
BtgI CCRYGG 1 cut(s) 288
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 2 cut(s) 103, 162
BtsIMutI CAGTG 5 cut(s) 538, 664, 701, 735, 843
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 3 cut(s) 794, 888, 1010
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 160
CviAII CATG 5 cut(s) 43, 289, 405, 477, 793
CviJI RGCY 9 cut(s) 72, 238, 494, 565, 597, 775, 799, 809, 1012
CviKI_1 RGCY 9 cut(s) 72, 238, 494, 565, 597, 775, 799, 809, 1012
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 5 cut(s) 74, 239, 638, 708, 995
DpnI GATC 4 cut(s) 41, 125, 140, 327
DpnII GATC 4 cut(s) 39, 123, 138, 325
DraIII CACNNNGTG 1 cut(s) 892
EaeI YGGCCR 2 cut(s) 492, 807
EagI CGGCCG 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
EclXI CGGCCG 1 cut(s) 492
Eco130I CCWWGG 1 cut(s) 288
Eco31I GGTCTC 2 cut(s) 269, 614
Eco47III AGCGCT 1 cut(s) 188
Eco52I CGGCCG 1 cut(s) 492
EcoNI CCTNNNNNAGG 1 cut(s) 707
EcoRI GAATTC 3 cut(s) 296, 949, 990
EcoRII CCWGG 2 cut(s) 300, 451
EcoT14I CCWWGG 1 cut(s) 288
EcoT22I ATGCAT 1 cut(s) 794
ErhI CCWWGG 1 cut(s) 288
FaeI CATG 5 cut(s) 46, 292, 408, 480, 796
FaqI GGGAC 1 cut(s) 430
FatI CATG 5 cut(s) 42, 288, 404, 476, 792
FauI CCCGC 2 cut(s) 87, 455
FblI GTMKAC 1 cut(s) 570
Fnu4HI GCNGC 7 cut(s) 319, 492, 560, 563, 598, 755, 797
FokI GGATG 2 cut(s) 110, 169
Fsp4HI GCNGC 7 cut(s) 319, 492, 560, 563, 598, 755, 797
GlaI GCGC 1 cut(s) 188
GluI GCNGC 7 cut(s) 319, 492, 560, 563, 598, 755, 797
GsaI CCCAGC 1 cut(s) 484
HaeII RGCGCY 1 cut(s) 190
HaeIII GGCC 3 cut(s) 72, 494, 809
HhaI GCGC 1 cut(s) 189
Hin1II CATG 5 cut(s) 46, 292, 408, 480, 796
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HinfI GANTC 3 cut(s) 170, 683, 1029
HphI GGTGA 3 cut(s) 646, 832, 971
Hpy166II GTNNAC 2 cut(s) 571, 744
Hpy188I TCNGA 4 cut(s) 195, 280, 688, 998
Hpy188III TCNNGA 6 cut(s) 43, 232, 371, 392, 526, 1052
Hpy8I GTNNAC 2 cut(s) 571, 744
Hpy99I CGWCG 1 cut(s) 113
HpyAV CCTTC 7 cut(s) 503, 587, 596, 683, 968, 1010, 1053
HpyCH4III ACNGT 9 cut(s) 34, 89, 259, 341, 533, 552, 575, 696, 820
HpyCH4V TGCA 6 cut(s) 318, 460, 518, 559, 792, 796
HpyF10VI GCNNNNNNNGC 4 cut(s) 477, 491, 497, 620
HpyF3I CTNAG 5 cut(s) 74, 239, 638, 708, 995
Hsp92II CATG 5 cut(s) 46, 292, 408, 480, 796
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 4 cut(s) 39, 123, 138, 325
Lsp1109I GCAGC 5 cut(s) 330, 571, 574, 584, 808
LweI GCATC 3 cut(s) 91, 390, 610
MaeIII GTNAC 5 cut(s) 34, 304, 802, 820, 892
MalI GATC 4 cut(s) 41, 125, 140, 327
MboI GATC 4 cut(s) 39, 123, 138, 325
MboII GAAGA 5 cut(s) 46, 118, 305, 875, 925
MflI RGATCY 2 cut(s) 123, 325
MhlI GDGCHC 1 cut(s) 888
MluCI AATT 8 cut(s) 296, 667, 719, 813, 941, 949, 990, 1063
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 883
MnlI CCTC 8 cut(s) 370, 373, 641, 713, 718, 955, 971, 992
Mph1103I ATGCAT 1 cut(s) 794
MseI TTAA 3 cut(s) 284, 350, 930
MslI CAYNNNNRTG 1 cut(s) 180
MspR9I CCNGG 2 cut(s) 302, 453
MvaI CCWGG 2 cut(s) 302, 453
MwoI GCNNNNNNNGC 4 cut(s) 477, 491, 497, 620
NcoI CCATGG 1 cut(s) 288
NdeII GATC 4 cut(s) 39, 123, 138, 325
NlaIII CATG 5 cut(s) 46, 292, 408, 480, 796
NmuCI GTSAC 2 cut(s) 820, 892
NsiI ATGCAT 1 cut(s) 794
NspI RCATGY 2 cut(s) 408, 796
PaeI GCATGC 1 cut(s) 796
PagI TCATGA 1 cut(s) 42
PasI CCCWGGG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 1 cut(s) 597
PfeI GAWTC 2 cut(s) 683, 1029
PkrI GCNGC 7 cut(s) 320, 493, 561, 564, 599, 756, 798
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp6I CCWGG 2 cut(s) 300, 451
PspFI CCCAGC 1 cut(s) 480
PspGI CCWGG 2 cut(s) 300, 451
PsuI RGATCY 2 cut(s) 123, 325
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 180
SaqAI TTAA 3 cut(s) 284, 350, 930
SatI GCNGC 7 cut(s) 319, 492, 560, 563, 598, 755, 797
Sau3AI GATC 4 cut(s) 39, 123, 138, 325
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 302, 453
SduI GDGCHC 1 cut(s) 888
SfaNI GCATC 3 cut(s) 91, 390, 610
SmiMI CAYNNNNRTG 1 cut(s) 180
SphI GCATGC 1 cut(s) 796
Sse9I AATT 8 cut(s) 296, 667, 719, 813, 941, 949, 990, 1063
SsiI CCGC 5 cut(s) 94, 448, 471, 491, 755
SspI AATATT 1 cut(s) 1036
StyD4I CCNGG 2 cut(s) 300, 451
StyI CCWWGG 1 cut(s) 288
TaaI ACNGT 9 cut(s) 34, 89, 259, 341, 533, 552, 575, 696, 820
TaqI TCGA 6 cut(s) 12, 222, 356, 384, 420, 547
TasI AATT 8 cut(s) 296, 667, 719, 813, 941, 949, 990, 1063
TatI WGTACW 1 cut(s) 159
TauI GCSGC 2 cut(s) 494, 757
TfiI GAWTC 2 cut(s) 683, 1029
Tru1I TTAA 3 cut(s) 284, 350, 930
Tru9I TTAA 3 cut(s) 284, 350, 930
TscAI CASTG 5 cut(s) 538, 664, 701, 742, 850
TseFI GTSAC 2 cut(s) 820, 892
TseI GCWGC 5 cut(s) 318, 559, 562, 597, 796
Tsp45I GTSAC 2 cut(s) 820, 892
TspDTI ATGAA 4 cut(s) 426, 465, 794, 962
TspGWI ACGGA 3 cut(s) 544, 660, 890
TspRI CASTG 5 cut(s) 538, 664, 701, 742, 850
XagI CCTNNNNNAGG 1 cut(s) 707
XapI RAATTY 3 cut(s) 296, 949, 990
XceI RCATGY 2 cut(s) 408, 796
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 904
XmiI GTMKAC 1 cut(s) 570
Zsp2I ATGCAT 1 cut(s) 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.