Rh3DG234200

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003327
Physical Location & Seq
Reverse (-)
22407756 .. 22408175
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG234200.1

Sequence Viewer

Length: 420 bp
ATGGCAGGTTATGTCGATAGCAGAAACCAGCTTGCCACAACAATCATTTTGATTCTCTTCTCATCGTCATTGGCCCATGCAAACGACGTCGACGTGGCCGAGATCTTCAACCAGTGGATCGTCCAACATCAGAGGGTGTACTCAACCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGCCAACTGGGAATACGTCGAGGACTTCAAGAAGATCGGCAACAAGACCTATACCTTAGGTCTGAATAAGTTCTCGGACTTAAGCCCGGAAGAATTCCTGAAAACTTATACCTGCGGCACAGATCCCACTCCCACCAGTACCCACTCAAACTCTCCACATATCCTCATGTCGGCATGGATTATCTTGACTATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

139

Amino Acids

15.98

Weight (kDa)

6.58

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 36 - 93 1.6e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 297
AclWI GGATC 2 cut(s) 125, 299
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 2 cut(s) 140, 322
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 109, 181, 211
AjiI CACGTC 1 cut(s) 94
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwI GGATC 2 cut(s) 125, 299
AoxI GGCC 2 cut(s) 72, 96
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 269
AxyI CCTNAGG 1 cut(s) 238
BccI CCATC 1 cut(s) 403
BcnI CCSGG 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 102
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
Bme1390I CCNGG 1 cut(s) 269
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 1 cut(s) 269
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 4 cut(s) 112, 194, 318, 403
Bse21I CCTNAGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 147
BseLI CCNNNNNNNGG 1 cut(s) 352
BseNI ACTGG 4 cut(s) 112, 194, 318, 403
BshFI GGCC 2 cut(s) 74, 98
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 352
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 2 cut(s) 74, 98
Bsp143I GATC 4 cut(s) 102, 117, 216, 304
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 74, 98
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 2 cut(s) 125, 299
BspTI CTTAAG 1 cut(s) 262
BsrI ACTGG 4 cut(s) 112, 194, 318, 403
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 102, 117, 216, 304
BssNI GRCGYC 1 cut(s) 87
Bst4CI ACNGT 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 33, 381
BstDEI CTNAG 1 cut(s) 238
BstKTI GATC 4 cut(s) 105, 120, 219, 307
BstMBI GATC 4 cut(s) 102, 117, 216, 304
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 267
BstX2I RGATCY 2 cut(s) 102, 304
BstYI RGATCY 2 cut(s) 102, 304
Bsu36I CCTNAGG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 74, 98
BtrI CACGTC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 33, 381
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 2 cut(s) 139, 321
CviAII CATG 4 cut(s) 77, 349, 357, 380
CviJI RGCY 5 cut(s) 31, 74, 98, 185, 267
CviKI_1 RGCY 5 cut(s) 31, 74, 98, 185, 267
CviQI GTAC 2 cut(s) 139, 321
DdeI CTNAG 1 cut(s) 238
DpnI GATC 4 cut(s) 104, 119, 218, 306
DpnII GATC 4 cut(s) 102, 117, 216, 304
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco81I CCTNAGG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 275
FaeI CATG 4 cut(s) 80, 352, 360, 383
FaqI GGGAC 1 cut(s) 409
FatI CATG 4 cut(s) 76, 348, 356, 379
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 298
Fsp4HI GCNGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 298
HaeIII GGCC 2 cut(s) 74, 98
HapII CCGG 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 4 cut(s) 80, 352, 360, 383
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 2 cut(s) 52, 388
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 3 cut(s) 91, 139, 154
Hpy188I TCNGA 3 cut(s) 132, 246, 259
Hpy188III TCNNGA 3 cut(s) 211, 280, 367
Hpy8I GTNNAC 3 cut(s) 91, 139, 154
Hpy99I CGWCG 4 cut(s) 89, 92, 95, 203
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4IV ACGT 3 cut(s) 87, 93, 198
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 3 cut(s) 87, 93, 198
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 4 cut(s) 80, 352, 360, 383
Kzo9I GATC 4 cut(s) 102, 117, 216, 304
LpnPI CCDG 8 cut(s) 41, 125, 175, 282, 293, 307, 331, 384
MaeII ACGT 3 cut(s) 87, 93, 198
MalI GATC 4 cut(s) 104, 119, 218, 306
MboI GATC 4 cut(s) 102, 117, 216, 304
MboII GAAGA 5 cut(s) 49, 97, 226, 284, 418
MflI RGATCY 2 cut(s) 102, 304
MluCI AATT 1 cut(s) 275
MmeI TCCRAC 1 cut(s) 148
MnlI CCTC 5 cut(s) 126, 142, 196, 356, 369
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 269
NciI CCSGG 1 cut(s) 269
NdeII GATC 4 cut(s) 102, 117, 216, 304
NlaIII CATG 4 cut(s) 80, 352, 360, 383
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 383
PaeI GCATGC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 96
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 52, 388
PkrI GCNGC 1 cut(s) 299
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 102, 304
RsaI GTAC 2 cut(s) 140, 322
RsaNI GTAC 2 cut(s) 139, 321
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 4 cut(s) 102, 117, 216, 304
Sau96I GGNCC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 269
SgrDI CGTCGACG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 383
Sse9I AATT 1 cut(s) 275
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 1 cut(s) 267
TaaI ACNGT 1 cut(s) 167
TaiI ACGT 3 cut(s) 90, 96, 201
TaqI TCGA 3 cut(s) 15, 90, 201
TasI AATT 1 cut(s) 275
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 2 cut(s) 52, 388
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 418
TspRI CASTG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 262
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 383
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 251
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.