Rroxscaffold_6G00404920

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0003327
Physical Location & Seq
Forward (+)
27404251 .. 27406035
1785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00404920.1

Sequence Viewer

Length: 909 bp
ATGGCAGGTTATGTCGATAGAAGAAACCAGCTTGCCACAACGATCATTTTGATTCTCTTCTCATCGTCATTGGCCCATGCAAACGACGTCGACGTGGCCGAGATCTTCAACCAGTGGATCGTCCAACATCAGAGGGTGTACTCAACCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGCCAACTGGGAATACGTCGAGAACTTCAAGAAGATCGGCAACAAGACCTATACCTTAGGTCTGAATAAGTTCTCGGACTTAAGCCCGGAAGAATTCCTGGAAACTTATAGCTGCGGCACAGATCCCACTCCCACCAGCGCATGCTGGGCATTTACGACCGCAGCAACAGTGGAAGGGATTGCATACATAAAGAGAAATAGCTCAGTTCAACTATCAGTGCAGCAAATCGTTGATTGTGATAAGTCTAACCTAGGCTGCAGAGGCGGTCTCGTAACGTATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTACCCATATGATGCTAAGGATGGAATATGCAATCTCGATAAGGCAAAACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGCCGCCGAATGACGAGTATGAGCTGATAATGGCAGTATGCCAGCAGCCGGTAGCGGCCAATATTAAGACGACAGATGATTTTCAGTTTTACACTGGTGGAGTATTCAGTAAAGACTGTGGAAATGGGGTGATAAACCACTCTATGACCATTGTTGGAATGGGGGATACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGCGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGAAGGTCATTGTTTCATCAATGCGAGAGCTTCTTATCCCATAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

302

Amino Acids

33.81

Weight (kDa)

5.99

Isoelectric Point (pI)

28.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 36 - 93 9.6e-19 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 108 - 300 3.1e-58 Papain family cysteine protease
Peptidase_C1_2 PF03051 237 - 279 1.3e-06 Peptidase C1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 591
AciI CCGC 5 cut(s) 297, 342, 447, 596, 647
AclWI GGATC 2 cut(s) 125, 299
AcoI YGGCCR 2 cut(s) 96, 648
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 809
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 140, 779, 827
AfiI CCNNNNNNNGG 1 cut(s) 640
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 4 cut(s) 109, 181, 211, 392
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 5 cut(s) 31, 294, 384, 616, 887
AluI AGCT 5 cut(s) 31, 294, 384, 616, 887
Alw26I GTCTC 1 cut(s) 455
AlwI GGATC 2 cut(s) 125, 299
AoxI GGCC 4 cut(s) 72, 96, 490, 648
ApeKI GCWGC 5 cut(s) 294, 344, 403, 438, 637
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 433
AspLEI GCGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 487, 733
AvrII CCTAGG 1 cut(s) 433
AxyI CCTNAGG 1 cut(s) 238
BauI CACGAG 1 cut(s) 796
BbvI GCAGC 5 cut(s) 281, 356, 415, 425, 649
BccI CCATC 1 cut(s) 524
BceAI ACGGC 1 cut(s) 784
BciT130I CCWGG 1 cut(s) 281
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 1 cut(s) 837
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 455
BfaI CTAG 2 cut(s) 434, 849
BfmI CTRYAG 1 cut(s) 439
BfrI CTTAAG 1 cut(s) 262
BfuI GTATCC 1 cut(s) 751
BglII AGATCT 1 cut(s) 102
BisI GCNGC 8 cut(s) 295, 298, 345, 404, 439, 596, 638, 648
BlnI CCTAGG 1 cut(s) 433
BlsI GCNGC 8 cut(s) 296, 299, 346, 405, 440, 597, 639, 649
BmcAI AGTACT 1 cut(s) 779
Bme1390I CCNGG 2 cut(s) 269, 281
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 269, 281
BmrI ACTGGG 2 cut(s) 199, 588
BmsI GCATC 1 cut(s) 511
BmuI ACTGGG 2 cut(s) 199, 588
BplI GAGNNNNNCTC 2 cut(s) 435, 467
Bpu10I CCTNAGC 1 cut(s) 525
BpuMI CCSGG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 475
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 455
BsaJI CCNNGG 2 cut(s) 147, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 640
Bse118I RCCGGY 1 cut(s) 640
Bse1I ACTGG 6 cut(s) 112, 194, 498, 583, 691, 785
Bse21I CCTNAGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 2 cut(s) 147, 433
BseGI GGATG 1 cut(s) 535
BseLI CCNNNNNNNGG 1 cut(s) 640
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 6 cut(s) 112, 194, 498, 583, 691, 785
BseXI GCAGC 5 cut(s) 281, 356, 415, 425, 649
BseYI CCCAGC 1 cut(s) 327
BsgI GTGCAG 1 cut(s) 422
Bsh1236I CGCG 1 cut(s) 591
Bsh1285I CGRYCG 1 cut(s) 342
BshFI GGCC 4 cut(s) 74, 98, 492, 650
BsiEI CGRYCG 1 cut(s) 342
BsiSI CCGG 2 cut(s) 269, 641
BslI CCNNNNNNNGG 1 cut(s) 640
BsmAI GTCTC 1 cut(s) 455
BsnI GGCC 4 cut(s) 74, 98, 492, 650
Bso31I GGTCTC 1 cut(s) 455
Bsp143I GATC 6 cut(s) 42, 102, 117, 216, 304, 837
BspACI CCGC 5 cut(s) 297, 342, 447, 596, 647
BspANI GGCC 4 cut(s) 74, 98, 492, 650
BspCNI CTCAG 1 cut(s) 398
BspFNI CGCG 1 cut(s) 591
BspMAI CTGCAG 1 cut(s) 443
BspPI GGATC 2 cut(s) 125, 299
BspTI CTTAAG 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 455
BsrFI RCCGGY 1 cut(s) 640
BsrI ACTGG 6 cut(s) 112, 194, 498, 583, 691, 785
BssAI RCCGGY 1 cut(s) 640
BssECI CCNNGG 2 cut(s) 147, 433
BssMI GATC 6 cut(s) 42, 102, 117, 216, 304, 837
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 796
BssT1I CCWWGG 1 cut(s) 433
Bst2BI CACGAG 1 cut(s) 796
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 3 cut(s) 167, 352, 710
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 6 cut(s) 33, 325, 589, 593, 635, 854
BstDEI CTNAG 3 cut(s) 238, 385, 525
BstF5I GGATG 1 cut(s) 535
BstFNI CGCG 1 cut(s) 591
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 6 cut(s) 45, 105, 120, 219, 307, 840
BstMAI GTCTC 1 cut(s) 455
BstMBI GATC 6 cut(s) 42, 102, 117, 216, 304, 837
BstMCI CGRYCG 1 cut(s) 342
BstMWI GCNNNNNNNGC 2 cut(s) 329, 444
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 2 cut(s) 267, 279
BstSFI CTRYAG 1 cut(s) 439
BstSNI TACGTA 1 cut(s) 475
BstUI CGCG 1 cut(s) 591
BstV1I GCAGC 5 cut(s) 281, 356, 415, 425, 649
BstX2I RGATCY 2 cut(s) 102, 304
BstYI RGATCY 2 cut(s) 102, 304
Bsu36I CCTNAGG 1 cut(s) 238
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 4 cut(s) 74, 98, 492, 650
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 1 cut(s) 535
BtsIMutI CAGTG 5 cut(s) 119, 357, 405, 505, 684
Cac8I GCNNGC 6 cut(s) 33, 325, 589, 593, 635, 854
CfoI GCGC 1 cut(s) 323
Cfr10I RCCGGY 1 cut(s) 640
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 139, 778, 826
CviAII CATG 3 cut(s) 77, 324, 829
CviQI GTAC 3 cut(s) 139, 778, 826
DdeI CTNAG 3 cut(s) 238, 385, 525
DpnI GATC 6 cut(s) 44, 104, 119, 218, 306, 839
DpnII GATC 6 cut(s) 42, 102, 117, 216, 304, 837
DraI TTTAAA 1 cut(s) 565
EaeI YGGCCR 2 cut(s) 96, 648
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco105I TACGTA 1 cut(s) 475
Eco130I CCWWGG 1 cut(s) 433
Eco147I AGGCCT 1 cut(s) 492
Eco31I GGTCTC 1 cut(s) 455
Eco57I CTGAAG 1 cut(s) 809
Eco81I CCTNAGG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 466
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 3 cut(s) 80, 327, 832
FatI CATG 3 cut(s) 76, 323, 828
FauNDI CATATG 1 cut(s) 517
FbaI TGATCA 1 cut(s) 837
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 8 cut(s) 295, 298, 345, 404, 439, 596, 638, 648
FokI GGATG 1 cut(s) 542
Fsp4HI GCNGC 8 cut(s) 295, 298, 345, 404, 439, 596, 638, 648
FspBI CTAG 2 cut(s) 434, 849
GlaI GCGC 1 cut(s) 322
GluI GCNGC 8 cut(s) 295, 298, 345, 404, 439, 596, 638, 648
GsaI CCCAGC 1 cut(s) 331
HaeIII GGCC 4 cut(s) 74, 98, 492, 650
HapII CCGG 2 cut(s) 269, 641
HhaI GCGC 1 cut(s) 323
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 80, 327, 832
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 1 cut(s) 52
HpaII CCGG 2 cut(s) 269, 641
HphI GGTGA 2 cut(s) 487, 733
Hpy166II GTNNAC 3 cut(s) 91, 139, 154
Hpy188I TCNGA 4 cut(s) 132, 246, 259, 842
Hpy188III TCNNGA 4 cut(s) 202, 211, 545, 806
Hpy8I GTNNAC 3 cut(s) 91, 139, 154
Hpy99I CGWCG 4 cut(s) 89, 92, 95, 203
HpyAV CCTTC 3 cut(s) 350, 812, 854
HpyCH4III ACNGT 3 cut(s) 167, 352, 710
HpyCH4IV ACGT 5 cut(s) 87, 93, 198, 458, 474
HpyCH4V TGCA 6 cut(s) 80, 365, 403, 441, 464, 540
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 444
HpyF3I CTNAG 3 cut(s) 238, 385, 525
HpySE526I ACGT 5 cut(s) 87, 93, 198, 458, 474
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 80, 327, 832
HspAI GCGC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 837
Kzo9I GATC 6 cut(s) 42, 102, 117, 216, 304, 837
Lsp1109I GCAGC 5 cut(s) 281, 356, 415, 425, 649
LweI GCATC 1 cut(s) 511
MaeI CTAG 2 cut(s) 434, 849
MaeII ACGT 5 cut(s) 87, 93, 198, 458, 474
MaeIII GTNAC 1 cut(s) 454
MalI GATC 6 cut(s) 44, 104, 119, 218, 306, 839
MboI GATC 6 cut(s) 42, 102, 117, 216, 304, 837
MboII GAAGA 6 cut(s) 33, 49, 97, 226, 284, 802
MflI RGATCY 2 cut(s) 102, 304
MluCI AATT 4 cut(s) 275, 508, 560, 900
MmeI TCCRAC 2 cut(s) 148, 727
MnlI CCTC 7 cut(s) 126, 142, 437, 482, 503, 815, 836
Mph1103I ATGCAT 1 cut(s) 466
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 263, 564, 657, 774
MslI CAYNNNNRTG 1 cut(s) 833
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 2 cut(s) 269, 641
MspR9I CCNGG 2 cut(s) 269, 281
MvaI CCWGG 1 cut(s) 281
MvnI CGCG 1 cut(s) 591
MwoI GCNNNNNNNGC 2 cut(s) 329, 444
NciI CCSGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 517
NdeII GATC 6 cut(s) 42, 102, 117, 216, 304, 837
NlaIII CATG 3 cut(s) 80, 327, 832
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 466
NspI RCATGY 1 cut(s) 327
PaeI GCATGC 1 cut(s) 327
PceI AGGCCT 1 cut(s) 492
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 96
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 52
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 8 cut(s) 296, 299, 346, 405, 440, 597, 639, 649
Ppu21I YACGTR 1 cut(s) 475
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 279
PspPI GGNCC 1 cut(s) 73
PstI CTGCAG 1 cut(s) 443
PsuI RGATCY 2 cut(s) 102, 304
RsaI GTAC 3 cut(s) 140, 779, 827
RsaNI GTAC 3 cut(s) 139, 778, 826
RseI CAYNNNNRTG 1 cut(s) 833
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 263, 564, 657, 774
SatI GCNGC 8 cut(s) 295, 298, 345, 404, 439, 596, 638, 648
Sau3AI GATC 6 cut(s) 42, 102, 117, 216, 304, 837
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 779
ScrFI CCNGG 2 cut(s) 269, 281
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 1 cut(s) 439
SgrDI CGTCGACG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 833
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SnaBI TACGTA 1 cut(s) 475
SphI GCATGC 1 cut(s) 327
Sse9I AATT 4 cut(s) 275, 508, 560, 900
SseBI AGGCCT 1 cut(s) 492
SsiI CCGC 5 cut(s) 297, 342, 447, 596, 647
SspI AATATT 1 cut(s) 655
SspMI CTAG 2 cut(s) 434, 849
StuI AGGCCT 1 cut(s) 492
StyD4I CCNGG 2 cut(s) 267, 279
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 167, 352, 710
TaiI ACGT 5 cut(s) 90, 96, 201, 461, 477
TaqI TCGA 4 cut(s) 15, 90, 201, 546
TasI AATT 4 cut(s) 275, 508, 560, 900
TatI WGTACW 2 cut(s) 138, 777
TauI GCSGC 3 cut(s) 300, 598, 650
TfiI GAWTC 1 cut(s) 52
Tru1I TTAA 4 cut(s) 263, 564, 657, 774
Tru9I TTAA 4 cut(s) 263, 564, 657, 774
TscAI CASTG 5 cut(s) 119, 357, 405, 505, 691
TseI GCWGC 5 cut(s) 294, 344, 403, 438, 637
TspDTI ATGAA 1 cut(s) 862
TspGWI ACGGA 2 cut(s) 496, 501
TspRI CASTG 5 cut(s) 119, 357, 405, 505, 691
Vha464I CTTAAG 1 cut(s) 262
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 748
XmaJI CCTAGG 1 cut(s) 433
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 434, 849
ZraI GACGTC 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 779
Zsp2I ATGCAT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.