Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

6452285 .. 6453609

Gene Structure 1325 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29062

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGTAATGTCGATAACAGAAACCTGCTTGCCATAACGATCATGATGATTCTCTTCTCATCAACATTGGCCCTTAGAAAACTGAACGATCGGCGGGAAGATGCAAACGACAACGTTGCCAAGATCTTCATCGACTGGATCATACGACACCGAAGGATGTACTTGAATGAGTCCCACAAACATGAGCGCTTTCAGATATTCAAAACCAACTGGGAATACGTCGAAAACTTCAAGAAGCTCAGTAATAAGACCTATACCGTAGGTCTCAATGAGTTCTCTGACTTAACCACGGAAGAATTCCGGGCAACTTATGGCTGCAGCATAGATCCCATTCCAAACAGTATCCACACAAACTCCACCTCCTCATCTCCTGATGTCAGCATCGAGTATCTTGACTATGATACATGCGATGAAACAAAGGATTGGACGAAAGAAGGATACGTGACCAGCCCTGGGATGCAAAATACATGTCGTTCATGCTGGGCATTTGCGGCCGTAGCAGGAGTGGAAGGGATTGCACAAATCAGGAACAGAGAAAACCCAGCTCGACTATCCGTGCAGCAGCTCGTTGATTGTGATGAGAAGTATAACAGAGGCTGCAGAGGCGGTCTCGCAAGATATGCCTACGACTACATAGTAAGGAACGGAGGCATCACCAGTGCCGAAAATTACCCATATACTGATTCGGAAGGACAGTGCGACCTCGCTAAGGAAAAACAATTTGATGCAAGTATCACTGGGTTTACTCTCGTGCCGCCAAATGACGAGTTTGAGCTGATGAAGGCAGTATGCATGCAGCCGGTATCGGCCAGAATTACGTTGACAGGTGAACTTCAGCGCTACACTGGTGGAGTATTCAGTGGAGAGTGTGGAATGGAGTTAGGGCACGCTGTGACCATTGTTGGAATGGGGAAGACTGATGACGGCATTAAGTACTGGAAATTAATGAATTCGTGGGGTGAGATGTGGGGCGAAGGAGGGTATCTTAGAATTCTCAGAGGAACTGGCAAGCCAGAAGGTCATTGTGGCATAAATATTGAACCTTCTTATCCCGATATTGGTGACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

356

Amino Acids

40.17

Weight (kDa)

5.17

Isoelectric Point (pI)

31.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	43 - 100	6.7e-16	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	138 - 351	4e-61	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AciI	CCGC	4 cut(s)	94, 491, 606, 755
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	2 cut(s)	146, 320
AcoI	YGGCCR	2 cut(s)	492, 807
AcsI	RAATTY	3 cut(s)	296, 949, 990
AcuI	CTGAAG	1 cut(s)	818
AdeI	CACNNNGTG	1 cut(s)	892
AfaI	GTAC	2 cut(s)	161, 935
AfeI	AGCGCT	2 cut(s)	188, 839
AfiI	CCNNNNNNNGG	3 cut(s)	453, 709, 1058
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	166, 202, 232, 1040
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	4 cut(s)	238, 545, 565, 775
AluI	AGCT	4 cut(s)	238, 545, 565, 775
Alw26I	GTCTC	2 cut(s)	269, 614
AlwI	GGATC	2 cut(s)	146, 320
AlwNI	CAGNNNCTG	1 cut(s)	597
Aor51HI	AGCGCT	2 cut(s)	188, 839
AoxI	GGCC	3 cut(s)	69, 492, 807
ApeKI	GCWGC	6 cut(s)	315, 318, 559, 562, 597, 796
ApoI	RAATTY	3 cut(s)	296, 949, 990
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
AseI	ATTAAT	1 cut(s)	944
AspLEI	GCGC	2 cut(s)	189, 840
AspS9I	GGNCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	302
AsuHPI	GGTGA	3 cut(s)	646, 839, 971
BaeGI	GKGCMC	1 cut(s)	888
BauI	CACGAG	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	920
BbvI	GCAGC	6 cut(s)	302, 330, 571, 574, 584, 808
BceAI	ACGGC	2 cut(s)	479, 940
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	2 cut(s)	353, 431
BcnI	CCSGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	269, 614
BfmI	CTRYAG	2 cut(s)	316, 598
BfoI	RGCGCY	2 cut(s)	190, 841
BfuAI	ACCTGC	1 cut(s)	33
BfuI	GTATCC	2 cut(s)	353, 431
BglII	AGATCT	1 cut(s)	123
BisI	GCNGC	8 cut(s)	316, 319, 492, 560, 563, 598, 755, 797
BlsI	GCNGC	8 cut(s)	317, 320, 493, 561, 564, 599, 756, 798
BmcAI	AGTACT	1 cut(s)	935
Bme1390I	CCNGG	2 cut(s)	302, 453
BmgT120I	GGNCC	1 cut(s)	70
BmrFI	CCNGG	2 cut(s)	302, 453
BmrI	ACTGGG	2 cut(s)	220, 747
BmsI	GCATC	5 cut(s)	91, 390, 447, 660, 715
BmuI	ACTGGG	2 cut(s)	220, 747
BpiI	GAAGAC	1 cut(s)	920
BplI	GAGNNNNNCTC	2 cut(s)	594, 626
Bpu10I	CCTNAGC	1 cut(s)	708
BpuMI	CCSGG	1 cut(s)	302
BsaAI	YACGTR	1 cut(s)	442
BsaBI	GATNNNNATC	1 cut(s)	128
BsaI	GGTCTC	2 cut(s)	269, 614
BsaJI	CCNNGG	3 cut(s)	288, 451, 452
BsaXI	ACNNNNNCTCC	4 cut(s)	338, 344, 368, 374
Bsc4I	CCNNNNNNNGG	3 cut(s)	453, 709, 1058
Bse118I	RCCGGY	1 cut(s)	799
Bse1I	ACTGG	7 cut(s)	140, 215, 657, 742, 850, 941, 1009
Bse8I	GATNNNNATC	1 cut(s)	128
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	3 cut(s)	288, 451, 452
BseGI	GGATG	2 cut(s)	162, 462
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	3 cut(s)	453, 709, 1058
BseMII	CTCAG	2 cut(s)	253, 1009
BseNI	ACTGG	7 cut(s)	140, 215, 657, 742, 850, 941, 1009
BseRI	GAGGAG	1 cut(s)	352
BseSI	GKGCMC	1 cut(s)	888
BseX3I	CGGCCG	1 cut(s)	492
BseXI	GCAGC	6 cut(s)	302, 330, 571, 574, 584, 808
BseYI	CCCAGC	2 cut(s)	480, 541
BsgI	GTGCAG	1 cut(s)	578
Bsh1285I	CGRYCG	2 cut(s)	91, 495
BshFI	GGCC	3 cut(s)	71, 494, 809
BsiEI	CGRYCG	2 cut(s)	91, 495
BsiSI	CCGG	2 cut(s)	301, 800
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	453, 709, 1058
BsmAI	GTCTC	2 cut(s)	269, 614
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	3 cut(s)	71, 494, 809
Bso31I	GGTCTC	2 cut(s)	269, 614
Bsp1286I	GDGCHC	1 cut(s)	888
Bsp143I	GATC	5 cut(s)	39, 88, 123, 138, 325
BspACI	CCGC	4 cut(s)	94, 491, 606, 755
BspANI	GGCC	3 cut(s)	71, 494, 809
BspCNI	CTCAG	2 cut(s)	252, 1008
BspHI	TCATGA	1 cut(s)	42
BspMAI	CTGCAG	2 cut(s)	320, 602
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	146, 320
BspTNI	GGTCTC	2 cut(s)	269, 614
BsrFI	RCCGGY	1 cut(s)	799
BsrI	ACTGG	7 cut(s)	140, 215, 657, 742, 850, 941, 1009
BssAI	RCCGGY	1 cut(s)	799
BssECI	CCNNGG	3 cut(s)	288, 451, 452
BssMI	GATC	5 cut(s)	39, 88, 123, 138, 325
BssSI	CACGAG	1 cut(s)	749
Bst2BI	CACGAG	1 cut(s)	749
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	3 cut(s)	259, 341, 696
Bst6I	CTCTTC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstBAI	YACGTR	1 cut(s)	442
BstC8I	GCNNGC	4 cut(s)	30, 794, 888, 1010
BstDEI	CTNAG	5 cut(s)	74, 239, 708, 986, 995
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	1061
BstENI	CCTNNNNNAGG	1 cut(s)	707
BstF5I	GGATG	2 cut(s)	162, 462
BstH2I	RGCGCY	2 cut(s)	190, 841
BstHHI	GCGC	2 cut(s)	189, 840
BstKTI	GATC	5 cut(s)	42, 91, 126, 141, 328
BstMAI	GTCTC	2 cut(s)	269, 614
BstMBI	GATC	5 cut(s)	39, 88, 123, 138, 325
BstMCI	CGRYCG	2 cut(s)	91, 495
BstMWI	GCNNNNNNNGC	4 cut(s)	491, 497, 603, 620
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	3 cut(s)	408, 471, 796
BstPI	GGTNACC	1 cut(s)	1061
BstSCI	CCNGG	2 cut(s)	300, 451
BstSFI	CTRYAG	2 cut(s)	316, 598
BstSLI	GKGCMC	1 cut(s)	888
BstV1I	GCAGC	6 cut(s)	302, 330, 571, 574, 584, 808
BstV2I	GAAGAC	1 cut(s)	920
BstX2I	RGATCY	2 cut(s)	123, 325
BstYI	RGATCY	2 cut(s)	123, 325
BstZI	CGGCCG	1 cut(s)	492
BsuI	GTATCC	2 cut(s)	353, 431
BsuRI	GGCC	3 cut(s)	71, 494, 809
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	162, 462
BtsIMutI	CAGTG	5 cut(s)	664, 701, 735, 843, 865
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	4 cut(s)	30, 794, 888, 1010
CaiI	CAGNNNCTG	1 cut(s)	597
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	2 cut(s)	189, 840
Cfr10I	RCCGGY	1 cut(s)	799
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	2 cut(s)	160, 934
CviAII	CATG	6 cut(s)	43, 182, 405, 468, 477, 793
CviQI	GTAC	2 cut(s)	160, 934
DdeI	CTNAG	5 cut(s)	74, 239, 708, 986, 995
DpnI	GATC	5 cut(s)	41, 90, 125, 140, 327
DpnII	GATC	5 cut(s)	39, 88, 123, 138, 325
DraIII	CACNNNGTG	1 cut(s)	892
EaeI	YGGCCR	2 cut(s)	492, 807
EagI	CGGCCG	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
EclXI	CGGCCG	1 cut(s)	492
Eco31I	GGTCTC	2 cut(s)	269, 614
Eco47III	AGCGCT	2 cut(s)	188, 839
Eco52I	CGGCCG	1 cut(s)	492
Eco57I	CTGAAG	1 cut(s)	818
Eco91I	GGTNACC	1 cut(s)	1061
EcoNI	CCTNNNNNAGG	1 cut(s)	707
EcoO65I	GGTNACC	1 cut(s)	1061
EcoRI	GAATTC	3 cut(s)	296, 949, 990
EcoRII	CCWGG	1 cut(s)	451
EcoT22I	ATGCAT	1 cut(s)	794
FaeI	CATG	6 cut(s)	46, 185, 408, 471, 480, 796
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	6 cut(s)	42, 181, 404, 467, 476, 792
FauI	CCCGC	1 cut(s)	87
Fnu4HI	GCNGC	8 cut(s)	316, 319, 492, 560, 563, 598, 755, 797
FokI	GGATG	2 cut(s)	169, 469
Fsp4HI	GCNGC	8 cut(s)	316, 319, 492, 560, 563, 598, 755, 797
GlaI	GCGC	2 cut(s)	188, 839
GluI	GCNGC	8 cut(s)	316, 319, 492, 560, 563, 598, 755, 797
GsaI	CCCAGC	2 cut(s)	484, 545
HaeII	RGCGCY	2 cut(s)	190, 841
HaeIII	GGCC	3 cut(s)	71, 494, 809
HapII	CCGG	2 cut(s)	301, 800
HhaI	GCGC	2 cut(s)	189, 840
Hin1II	CATG	6 cut(s)	46, 185, 408, 471, 480, 796
Hin6I	GCGC	2 cut(s)	187, 838
HinP1I	GCGC	2 cut(s)	187, 838
HincII	GTYRAC	1 cut(s)	822
HindII	GTYRAC	1 cut(s)	822
HinfI	GANTC	3 cut(s)	49, 170, 683
HpaII	CCGG	2 cut(s)	301, 800
HphI	GGTGA	3 cut(s)	646, 839, 971
Hpy166II	GTNNAC	3 cut(s)	744, 822, 830
Hpy188I	TCNGA	4 cut(s)	195, 280, 688, 998
Hpy188III	TCNNGA	6 cut(s)	43, 232, 371, 392, 526, 1052
Hpy8I	GTNNAC	3 cut(s)	744, 822, 830
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	8 cut(s)	147, 428, 503, 683, 775, 968, 1010, 1053
HpyCH4III	ACNGT	3 cut(s)	259, 341, 696
HpyCH4IV	ACGT	4 cut(s)	114, 219, 441, 818
HpyCH4V	TGCA	9 cut(s)	104, 318, 460, 518, 559, 600, 728, 792, 796
HpyF10VI	GCNNNNNNNGC	4 cut(s)	491, 497, 603, 620
HpyF3I	CTNAG	5 cut(s)	74, 239, 708, 986, 995
HpySE526I	ACGT	4 cut(s)	114, 219, 441, 818
Hsp92II	CATG	6 cut(s)	46, 185, 408, 471, 480, 796
HspAI	GCGC	2 cut(s)	187, 838
Kzo9I	GATC	5 cut(s)	39, 88, 123, 138, 325
Lsp1109I	GCAGC	6 cut(s)	302, 330, 571, 574, 584, 808
LweI	GCATC	5 cut(s)	91, 390, 447, 660, 715
MaeII	ACGT	4 cut(s)	114, 219, 441, 818
MaeIII	GTNAC	3 cut(s)	442, 892, 1061
MalI	GATC	5 cut(s)	41, 90, 125, 140, 327
MboI	GATC	5 cut(s)	39, 88, 123, 138, 325
MboII	GAAGA	5 cut(s)	46, 110, 118, 305, 925
MflI	RGATCY	2 cut(s)	123, 325
MhlI	GDGCHC	1 cut(s)	888
MluCI	AATT	7 cut(s)	296, 667, 719, 813, 941, 949, 990
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	883
MnlI	CCTC	8 cut(s)	370, 373, 587, 596, 641, 713, 971, 992
Mph1103I	ATGCAT	1 cut(s)	794
MseI	TTAA	3 cut(s)	284, 930, 944
MslI	CAYNNNNRTG	1 cut(s)	180
MspI	CCGG	2 cut(s)	301, 800
MspR9I	CCNGG	2 cut(s)	302, 453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	491, 497, 603, 620
NciI	CCSGG	1 cut(s)	302
NdeII	GATC	5 cut(s)	39, 88, 123, 138, 325
NlaIII	CATG	6 cut(s)	46, 185, 408, 471, 480, 796
NmuCI	GTSAC	3 cut(s)	442, 892, 1061
NsiI	ATGCAT	1 cut(s)	794
NspI	RCATGY	3 cut(s)	408, 471, 796
PaeI	GCATGC	1 cut(s)	796
PagI	TCATGA	1 cut(s)	42
PasI	CCCWGGG	1 cut(s)	452
PciI	ACATGT	1 cut(s)	467
PfeI	GAWTC	2 cut(s)	49, 683
PkrI	GCNGC	8 cut(s)	317, 320, 493, 561, 564, 599, 756, 798
Ple19I	CGATCG	1 cut(s)	91
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
Ppu21I	YACGTR	1 cut(s)	442
PscI	ACATGT	1 cut(s)	467
PshBI	ATTAAT	1 cut(s)	944
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	451
PspEI	GGTNACC	1 cut(s)	1061
PspFI	CCCAGC	2 cut(s)	480, 541
PspGI	CCWGG	1 cut(s)	451
PspPI	GGNCC	1 cut(s)	70
PstI	CTGCAG	2 cut(s)	320, 602
PstNI	CAGNNNCTG	1 cut(s)	597
PsuI	RGATCY	2 cut(s)	123, 325
PvuI	CGATCG	1 cut(s)	91
RsaI	GTAC	2 cut(s)	161, 935
RsaNI	GTAC	2 cut(s)	160, 934
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	284, 930, 944
SatI	GCNGC	8 cut(s)	316, 319, 492, 560, 563, 598, 755, 797
Sau3AI	GATC	5 cut(s)	39, 88, 123, 138, 325
Sau96I	GGNCC	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	935
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	2 cut(s)	302, 453
SduI	GDGCHC	1 cut(s)	888
SfaNI	GCATC	5 cut(s)	91, 390, 447, 660, 715
SfcI	CTRYAG	2 cut(s)	316, 598
SmiMI	CAYNNNNRTG	1 cut(s)	180
SphI	GCATGC	1 cut(s)	796
Sse9I	AATT	7 cut(s)	296, 667, 719, 813, 941, 949, 990
SsiI	CCGC	4 cut(s)	94, 491, 606, 755
SspI	AATATT	1 cut(s)	1036
StyD4I	CCNGG	2 cut(s)	300, 451
TaaI	ACNGT	3 cut(s)	259, 341, 696
TaiI	ACGT	4 cut(s)	117, 222, 444, 821
TaqI	TCGA	5 cut(s)	12, 132, 222, 384, 547
TasI	AATT	7 cut(s)	296, 667, 719, 813, 941, 949, 990
TatI	WGTACW	2 cut(s)	159, 933
TauI	GCSGC	2 cut(s)	494, 757
TfiI	GAWTC	2 cut(s)	49, 683
Tru1I	TTAA	3 cut(s)	284, 930, 944
Tru9I	TTAA	3 cut(s)	284, 930, 944
TscAI	CASTG	5 cut(s)	664, 701, 742, 850, 865
TseFI	GTSAC	3 cut(s)	442, 892, 1061
TseI	GCWGC	6 cut(s)	315, 318, 559, 562, 597, 796
Tsp45I	GTSAC	3 cut(s)	442, 892, 1061
TspDTI	ATGAA	5 cut(s)	118, 426, 465, 794, 962
TspGWI	ACGGA	3 cut(s)	305, 544, 660
TspRI	CASTG	5 cut(s)	664, 701, 742, 850, 865
VspI	ATTAAT	1 cut(s)	944
XagI	CCTNNNNNAGG	1 cut(s)	707
XapI	RAATTY	3 cut(s)	296, 949, 990
XceI	RCATGY	3 cut(s)	408, 471, 796
XcmI	CCANNNNNNNNNTGG	1 cut(s)	904
ZrmI	AGTACT	1 cut(s)	935
Zsp2I	ATGCAT	1 cut(s)	794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.