Rw3G019000

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003327
Physical Location & Seq
Reverse (-)
21412204 .. 21414317
2114 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019000.1

Sequence Viewer

Length: 1047 bp
ATGGCAGGTTATGTCGATAGCAGAAACCAGCTTGCCACAACAATCATTTTGATTCTCTTCTCATCGTCATTGGCCCATGCAAACGACGTCGACGTGGCCGAGATCTTCAACCAGTGGATCGTCCAACATCAGAGGGTGTACTCAACCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGCCAACTGGGAATACGTCGAGAACTTCAAGAAGATCGGCAACAAGACCTATACCTTAGGTCTGAATAAGTTCTCGGACTTAAGCCCGGAAGAATTCCTGAAAACTTATACCTGCGGCACAGATCCCACTCCCACCAGTACCCACTCAAACTCGACCTCCACATATCCTCATGTCGGCATGGATTATCTTGACTATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGATATGTGAGCCCCCCTGGGGATCAGACTCCGTACTGTGCTGCATGCTGGGCATTTACGACCGCAGCAGCAGTGGAAGGGATTGCATATATAAAGAGAAATAGCTCAGTTCAACTATCCGTGCAGCAAATCGTTGATTGTGATAAGTTGTCTAACCTAGGATGCAGTGGCGGTCTCGTAACGGATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTACCCATATGATGCTAAGGATGGAATATGCAATCTCGGTAAGGCAAAACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGCCGCCGAATGACGAGTATGAGATGATAATGGCAGTATGCCAGCAGCCGGTAGCGGTCGATATTAAGACGACAGATGATTTTCAGTTTTACAATGGTGGAGTATTCAGTAAAGACTGTGGAAATGGGTTGATAGACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGTGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGAAGGTCATTGTTTCATCAATGCGAGAGCTTCTTATCCCATAATTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

348

Amino Acids

38.85

Weight (kDa)

5.06

Isoelectric Point (pI)

26.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 36 - 93 1.2e-18 Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1 PF00112 131 - 346 2.4e-62 Papain family cysteine protease
Peptidase_C1_2 PF03051 283 - 325 3.8e-07 Peptidase C1-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 90
AccII CGCG 1 cut(s) 729
AciI CCGC 5 cut(s) 297, 477, 585, 734, 785
AclWI GGATC 3 cut(s) 125, 299, 444
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 275
AcuI CTGAAG 1 cut(s) 947
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 5 cut(s) 140, 322, 449, 917, 965
AfiI CCNNNNNNNGG 3 cut(s) 356, 433, 778
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 4 cut(s) 109, 181, 211, 527
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 3 cut(s) 31, 519, 1025
AluI AGCT 3 cut(s) 31, 519, 1025
Alw26I GTCTC 2 cut(s) 593, 890
AlwI GGATC 3 cut(s) 125, 299, 444
AoxI GGCC 3 cut(s) 72, 96, 628
ApeKI GCWGC 5 cut(s) 455, 479, 482, 538, 775
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 251
AspA2I CCTAGG 1 cut(s) 571
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 269
AsuHPI GGTGA 2 cut(s) 625, 965
AvrII CCTAGG 1 cut(s) 571
AxyI CCTNAGG 1 cut(s) 238
BanII GRGCYC 1 cut(s) 428
BauI CACGAG 1 cut(s) 934
BbvI GCAGC 5 cut(s) 442, 491, 494, 550, 787
BccI CCATC 2 cut(s) 407, 662
BceAI ACGGC 1 cut(s) 922
BciT130I CCWGG 1 cut(s) 432
BclI TGATCA 1 cut(s) 975
BcnI CCSGG 1 cut(s) 269
BcoDI GTCTC 2 cut(s) 593, 890
BfaI CTAG 2 cut(s) 572, 987
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 102
BisI GCNGC 7 cut(s) 298, 456, 480, 483, 539, 734, 776
BlnI CCTAGG 1 cut(s) 571
BlsI GCNGC 7 cut(s) 299, 457, 481, 484, 540, 735, 777
BmcAI AGTACT 1 cut(s) 917
Bme1390I CCNGG 2 cut(s) 269, 432
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 269, 432
BmrI ACTGGG 2 cut(s) 199, 726
BmsI GCATC 3 cut(s) 566, 589, 649
BmuI ACTGGG 2 cut(s) 199, 726
Bpu10I CCTNAGC 1 cut(s) 663
BpuMI CCSGG 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 613
BsaHI GRCGYC 1 cut(s) 87
BsaI GGTCTC 1 cut(s) 593
BsaJI CCNNGG 4 cut(s) 147, 430, 431, 571
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 433, 778
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 7 cut(s) 112, 194, 318, 407, 636, 721, 923
Bse21I CCTNAGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 4 cut(s) 147, 430, 431, 571
BseGI GGATG 3 cut(s) 581, 604, 673
BseLI CCNNNNNNNGG 3 cut(s) 356, 433, 778
BseMII CTCAG 1 cut(s) 534
BseNI ACTGG 7 cut(s) 112, 194, 318, 407, 636, 721, 923
BseXI GCAGC 5 cut(s) 442, 491, 494, 550, 787
BseYI CCCAGC 1 cut(s) 462
BsgI GTGCAG 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 729
Bsh1285I CGRYCG 2 cut(s) 477, 789
BshFI GGCC 3 cut(s) 74, 98, 630
BsiEI CGRYCG 2 cut(s) 477, 789
BsiSI CCGG 2 cut(s) 269, 779
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 3 cut(s) 356, 433, 778
BsmAI GTCTC 2 cut(s) 593, 890
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 3 cut(s) 74, 98, 630
Bso31I GGTCTC 1 cut(s) 593
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 6 cut(s) 102, 117, 216, 304, 436, 975
BspACI CCGC 5 cut(s) 297, 477, 585, 734, 785
BspANI GGCC 3 cut(s) 74, 98, 630
BspCNI CTCAG 1 cut(s) 533
BspFNI CGCG 1 cut(s) 729
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 3 cut(s) 125, 299, 444
BspTI CTTAAG 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 593
BsrFI RCCGGY 1 cut(s) 778
BsrI ACTGG 7 cut(s) 112, 194, 318, 407, 636, 721, 923
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 4 cut(s) 147, 430, 431, 571
BssMI GATC 6 cut(s) 102, 117, 216, 304, 436, 975
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 934
BssT1I CCWWGG 1 cut(s) 571
Bst2BI CACGAG 1 cut(s) 934
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 3 cut(s) 167, 452, 848
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 262
BstBAI YACGTR 1 cut(s) 613
BstC8I GCNNGC 7 cut(s) 33, 385, 460, 727, 731, 773, 992
BstDEI CTNAG 3 cut(s) 238, 520, 663
BstF5I GGATG 3 cut(s) 581, 604, 673
BstFNI CGCG 1 cut(s) 729
BstKTI GATC 6 cut(s) 105, 120, 219, 307, 439, 978
BstMAI GTCTC 2 cut(s) 593, 890
BstMBI GATC 6 cut(s) 102, 117, 216, 304, 436, 975
BstMCI CGRYCG 2 cut(s) 477, 789
BstMWI GCNNNNNNNGC 1 cut(s) 464
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 2 cut(s) 387, 462
BstSCI CCNGG 2 cut(s) 267, 430
BstSNI TACGTA 1 cut(s) 613
BstUI CGCG 1 cut(s) 729
BstV1I GCAGC 5 cut(s) 442, 491, 494, 550, 787
BstX2I RGATCY 2 cut(s) 102, 304
BstYI RGATCY 2 cut(s) 102, 304
Bsu36I CCTNAGG 1 cut(s) 238
BsuRI GGCC 3 cut(s) 74, 98, 630
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 3 cut(s) 581, 604, 673
BtsI GCAGTG 2 cut(s) 492, 586
BtsIMutI CAGTG 4 cut(s) 119, 492, 586, 643
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 7 cut(s) 33, 385, 460, 727, 731, 773, 992
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 5 cut(s) 139, 321, 448, 916, 964
CviAII CATG 6 cut(s) 77, 353, 361, 384, 459, 967
CviQI GTAC 5 cut(s) 139, 321, 448, 916, 964
DdeI CTNAG 3 cut(s) 238, 520, 663
DpnI GATC 6 cut(s) 104, 119, 218, 306, 438, 977
DpnII GATC 6 cut(s) 102, 117, 216, 304, 436, 975
DraI TTTAAA 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco105I TACGTA 1 cut(s) 613
Eco130I CCWWGG 1 cut(s) 571
Eco147I AGGCCT 1 cut(s) 630
Eco24I GRGCYC 1 cut(s) 428
Eco31I GGTCTC 1 cut(s) 593
Eco57I CTGAAG 1 cut(s) 947
Eco81I CCTNAGG 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 430
EcoT14I CCWWGG 1 cut(s) 571
EcoT22I ATGCAT 1 cut(s) 604
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 6 cut(s) 80, 356, 364, 387, 462, 970
FaqI GGGAC 1 cut(s) 413
FatI CATG 6 cut(s) 76, 352, 360, 383, 458, 966
FauNDI CATATG 1 cut(s) 655
FbaI TGATCA 1 cut(s) 975
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 7 cut(s) 298, 456, 480, 483, 539, 734, 776
FokI GGATG 3 cut(s) 588, 611, 680
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 7 cut(s) 298, 456, 480, 483, 539, 734, 776
FspBI CTAG 2 cut(s) 572, 987
GluI GCNGC 7 cut(s) 298, 456, 480, 483, 539, 734, 776
GsaI CCCAGC 1 cut(s) 466
HaeIII GGCC 3 cut(s) 74, 98, 630
HapII CCGG 2 cut(s) 269, 779
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 6 cut(s) 80, 356, 364, 387, 462, 970
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 52, 392, 442
HpaII CCGG 2 cut(s) 269, 779
HphI GGTGA 2 cut(s) 625, 965
Hpy166II GTNNAC 3 cut(s) 91, 139, 154
Hpy188I TCNGA 5 cut(s) 132, 246, 259, 441, 980
Hpy188III TCNNGA 5 cut(s) 202, 211, 280, 371, 944
Hpy8I GTNNAC 3 cut(s) 91, 139, 154
Hpy99I CGWCG 4 cut(s) 89, 92, 95, 203
HpyAV CCTTC 3 cut(s) 485, 950, 992
HpyCH4III ACNGT 3 cut(s) 167, 452, 848
HpyCH4IV ACGT 4 cut(s) 87, 93, 198, 612
HpyCH4V TGCA 7 cut(s) 80, 458, 500, 538, 579, 602, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 464
HpyF3I CTNAG 3 cut(s) 238, 520, 663
HpySE526I ACGT 4 cut(s) 87, 93, 198, 612
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 6 cut(s) 80, 356, 364, 387, 462, 970
Ksp22I TGATCA 1 cut(s) 975
Kzo9I GATC 6 cut(s) 102, 117, 216, 304, 436, 975
Lsp1109I GCAGC 5 cut(s) 442, 491, 494, 550, 787
LweI GCATC 3 cut(s) 566, 589, 649
MaeI CTAG 2 cut(s) 572, 987
MaeII ACGT 4 cut(s) 87, 93, 198, 612
MaeIII GTNAC 1 cut(s) 592
MalI GATC 6 cut(s) 104, 119, 218, 306, 438, 977
MboI GATC 6 cut(s) 102, 117, 216, 304, 436, 975
MboII GAAGA 6 cut(s) 49, 97, 226, 284, 422, 940
MflI RGATCY 2 cut(s) 102, 304
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 4 cut(s) 275, 646, 698, 1038
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 2 cut(s) 148, 865
MnlI CCTC 9 cut(s) 126, 142, 349, 360, 373, 620, 641, 953, 974
Mph1103I ATGCAT 1 cut(s) 604
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 4 cut(s) 263, 702, 795, 912
MslI CAYNNNNRTG 1 cut(s) 971
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 2 cut(s) 269, 779
MspR9I CCNGG 2 cut(s) 269, 432
MvaI CCWGG 1 cut(s) 432
MvnI CGCG 1 cut(s) 729
MwoI GCNNNNNNNGC 1 cut(s) 464
NciI CCSGG 1 cut(s) 269
NdeI CATATG 1 cut(s) 655
NdeII GATC 6 cut(s) 102, 117, 216, 304, 436, 975
NlaIII CATG 6 cut(s) 80, 356, 364, 387, 462, 970
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 604
NspI RCATGY 2 cut(s) 387, 462
PaeI GCATGC 2 cut(s) 387, 462
PasI CCCWGGG 1 cut(s) 431
PceI AGGCCT 1 cut(s) 630
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 96
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 52, 392
PkrI GCNGC 7 cut(s) 299, 457, 481, 484, 540, 735, 777
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Ppu21I YACGTR 1 cut(s) 613
Psp6I CCWGG 1 cut(s) 430
PspFI CCCAGC 1 cut(s) 462
PspGI CCWGG 1 cut(s) 430
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 102, 304
RsaI GTAC 5 cut(s) 140, 322, 449, 917, 965
RsaNI GTAC 5 cut(s) 139, 321, 448, 916, 964
RseI CAYNNNNRTG 1 cut(s) 971
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 4 cut(s) 263, 702, 795, 912
SatI GCNGC 7 cut(s) 298, 456, 480, 483, 539, 734, 776
Sau3AI GATC 6 cut(s) 102, 117, 216, 304, 436, 975
Sau96I GGNCC 1 cut(s) 73
ScaI AGTACT 1 cut(s) 917
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 269, 432
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 3 cut(s) 566, 589, 649
SgrDI CGTCGACG 1 cut(s) 89
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SnaBI TACGTA 1 cut(s) 613
SphI GCATGC 2 cut(s) 387, 462
Sse9I AATT 4 cut(s) 275, 646, 698, 1038
SseBI AGGCCT 1 cut(s) 630
SsiI CCGC 5 cut(s) 297, 477, 585, 734, 785
SspMI CTAG 2 cut(s) 572, 987
StuI AGGCCT 1 cut(s) 630
StyD4I CCNGG 2 cut(s) 267, 430
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 3 cut(s) 167, 452, 848
TaiI ACGT 4 cut(s) 90, 96, 201, 615
TaqI TCGA 5 cut(s) 15, 90, 201, 335, 789
TasI AATT 4 cut(s) 275, 646, 698, 1038
TatI WGTACW 2 cut(s) 138, 915
TauI GCSGC 2 cut(s) 300, 736
TfiI GAWTC 2 cut(s) 52, 392
Tru1I TTAA 4 cut(s) 263, 702, 795, 912
Tru9I TTAA 4 cut(s) 263, 702, 795, 912
TscAI CASTG 4 cut(s) 119, 492, 586, 643
TseI GCWGC 5 cut(s) 455, 479, 482, 538, 775
TspDTI ATGAA 2 cut(s) 405, 1000
TspGWI ACGGA 6 cut(s) 422, 435, 523, 611, 634, 639
TspRI CASTG 4 cut(s) 119, 492, 586, 643
Vha464I CTTAAG 1 cut(s) 262
XapI RAATTY 1 cut(s) 275
XceI RCATGY 2 cut(s) 387, 462
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XmaJI CCTAGG 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 2 cut(s) 572, 987
ZraI GACGTC 1 cut(s) 88
ZrmI AGTACT 1 cut(s) 917
Zsp2I ATGCAT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.