Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Reverse (-)

20822975 .. 20824136

Gene Structure 1162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG207900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGATTATCTTGACTATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGATATGTGAACCCCCCTGGGGATCAGACTCCGTACTGTGCTGCATGCTGGGCATTTACGACCGCAGCAACAGTGGAAGGGATTGCATATATAAAGAGAAATAGCTCAGTTCAACTATCCGTGCAGCAAATCGTTGATTGTGATAAGTTGTCTATCCTAGGATGCAGTGGCGGTCTCGTAACGGATGCATTTGACTACGTAAAACGGAACGGAGGCCTCACCAGTGCCGACAATTACCCATATGATGCTAAGGATGGAATATGCAATCTCGATAAGGCAAAACAATTTAAAGCAAGTATTACTGGGTTTGCTCGCGTGCCGCCGAATGACGAGTATGAGATGATAATGGCAGTATGCCAGCAGCCGGTAGCGGTCGATATTAAGACGACAGATGATTTTCAGCTTTACACTGGTGGAGTATTCAGTAAAGACTGTGGAAATGGGTTGATAGACCACTCTATGACCATTGTTGGAATGGGGGAGACTGATGACGGCGTTAAGTACTGGAAACTGAAGAACTCGTGGGGTCAGGATTGGGGTGAAGGAGGGTACATGAGAATGATCAGAGGAACTAGCAAGCGAGAAGGTCATTGTTTCATCAATGCGAGAGCTTCTTATCCCATAATTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000323 GO:0000325 GO:0002376 GO:0003006 GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005783 GO:0005788 GO:0006508 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0008233 GO:0008234 GO:0009056 GO:0009057 GO:0009505 GO:0009555 GO:0009605 GO:0009607 GO:0009620 GO:0009626 GO:0009791 GO:0009908 GO:0009987 GO:0010623 GO:0012501 GO:0012505 GO:0016787 GO:0019538 GO:0022414 GO:0030154 GO:0030163 GO:0030312 GO:0031974 GO:0032501 GO:0032502 GO:0033554 GO:0034050 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044421 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048468 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050832 GO:0050896 GO:0051603 GO:0051704 GO:0051707 GO:0051716 GO:0061458 GO:0070011 GO:0070013 GO:0071704 GO:0071944 GO:0090567 GO:0098542 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

228

Amino Acids

25.24

Weight (kDa)

4.61

Isoelectric Point (pI)

23.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C1	PF00112	11 - 226	2e-62	Papain family cysteine protease
Peptidase_C1_2	PF03051	163 - 205	2e-07	Peptidase C1-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	369
AciI	CCGC	4 cut(s)	117, 225, 374, 425
AclWI	GGATC	1 cut(s)	84
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	3 cut(s)	89, 557, 605
AfiI	CCNNNNNNNGG	2 cut(s)	73, 418
AgsI	TTSAA	1 cut(s)	167
AjnI	CCWGG	1 cut(s)	70
AluBI	AGCT	3 cut(s)	159, 457, 665
AluI	AGCT	3 cut(s)	159, 457, 665
Alw26I	GTCTC	2 cut(s)	233, 530
AlwI	GGATC	1 cut(s)	84
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	4 cut(s)	95, 119, 178, 415
AspA2I	CCTAGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	265, 605
AvrII	CCTAGG	1 cut(s)	211
BauI	CACGAG	1 cut(s)	574
BbvI	GCAGC	4 cut(s)	82, 131, 190, 427
BccI	CCATC	2 cut(s)	47, 302
BceAI	ACGGC	1 cut(s)	562
BciT130I	CCWGG	1 cut(s)	72
BclI	TGATCA	1 cut(s)	615
BcoDI	GTCTC	2 cut(s)	233, 530
BfaI	CTAG	2 cut(s)	212, 627
BisI	GCNGC	5 cut(s)	96, 120, 179, 374, 416
BlnI	CCTAGG	1 cut(s)	211
BlsI	GCNGC	5 cut(s)	97, 121, 180, 375, 417
BmcAI	AGTACT	1 cut(s)	557
Bme1390I	CCNGG	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	72
BmrI	ACTGGG	1 cut(s)	366
BmsI	GCATC	3 cut(s)	206, 229, 289
BmuI	ACTGGG	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	303
BsaAI	YACGTR	1 cut(s)	253
BsaI	GGTCTC	1 cut(s)	233
BsaJI	CCNNGG	3 cut(s)	70, 71, 211
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 418
Bse118I	RCCGGY	1 cut(s)	418
Bse1I	ACTGG	5 cut(s)	47, 276, 361, 469, 563
BseBI	CCWGG	1 cut(s)	72
BseDI	CCNNGG	3 cut(s)	70, 71, 211
BseGI	GGATG	3 cut(s)	221, 244, 313
BseLI	CCNNNNNNNGG	2 cut(s)	73, 418
BseMII	CTCAG	1 cut(s)	174
BseNI	ACTGG	5 cut(s)	47, 276, 361, 469, 563
BseXI	GCAGC	4 cut(s)	82, 131, 190, 427
BseYI	CCCAGC	1 cut(s)	102
BsgI	GTGCAG	1 cut(s)	197
Bsh1236I	CGCG	1 cut(s)	369
Bsh1285I	CGRYCG	2 cut(s)	117, 429
BshFI	GGCC	1 cut(s)	270
BsiEI	CGRYCG	2 cut(s)	117, 429
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	53
BslI	CCNNNNNNNGG	2 cut(s)	73, 418
BsmAI	GTCTC	2 cut(s)	233, 530
BsmFI	GGGAC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	270
Bso31I	GGTCTC	1 cut(s)	233
Bsp143I	GATC	2 cut(s)	76, 615
BspACI	CCGC	4 cut(s)	117, 225, 374, 425
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	173
BspFNI	CGCG	1 cut(s)	369
BspPI	GGATC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	418
BsrI	ACTGG	5 cut(s)	47, 276, 361, 469, 563
BssAI	RCCGGY	1 cut(s)	418
BssECI	CCNNGG	3 cut(s)	70, 71, 211
BssMI	GATC	2 cut(s)	76, 615
BssSI	CACGAG	1 cut(s)	574
BssT1I	CCWWGG	1 cut(s)	211
Bst2BI	CACGAG	1 cut(s)	574
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	3 cut(s)	92, 127, 488
BstBAI	YACGTR	1 cut(s)	253
BstC8I	GCNNGC	6 cut(s)	25, 100, 367, 371, 413, 632
BstDEI	CTNAG	2 cut(s)	160, 303
BstF5I	GGATG	3 cut(s)	221, 244, 313
BstFNI	CGCG	1 cut(s)	369
BstKTI	GATC	2 cut(s)	79, 618
BstMAI	GTCTC	2 cut(s)	233, 530
BstMBI	GATC	2 cut(s)	76, 615
BstMCI	CGRYCG	2 cut(s)	117, 429
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	2 cut(s)	27, 102
BstSCI	CCNGG	1 cut(s)	70
BstSNI	TACGTA	1 cut(s)	253
BstUI	CGCG	1 cut(s)	369
BstV1I	GCAGC	4 cut(s)	82, 131, 190, 427
BsuRI	GGCC	1 cut(s)	270
BtsCI	GGATG	3 cut(s)	221, 244, 313
BtsI	GCAGTG	1 cut(s)	226
BtsIMutI	CAGTG	4 cut(s)	132, 226, 283, 462
Cac8I	GCNNGC	6 cut(s)	25, 100, 367, 371, 413, 632
Cfr10I	RCCGGY	1 cut(s)	418
Csp6I	GTAC	3 cut(s)	88, 556, 604
CviAII	CATG	3 cut(s)	24, 99, 607
CviJI	RGCY	5 cut(s)	159, 270, 418, 457, 665
CviKI_1	RGCY	5 cut(s)	159, 270, 418, 457, 665
CviQI	GTAC	3 cut(s)	88, 556, 604
DdeI	CTNAG	2 cut(s)	160, 303
DpnI	GATC	2 cut(s)	78, 617
DpnII	GATC	2 cut(s)	76, 615
DraI	TTTAAA	1 cut(s)	343
Eco105I	TACGTA	1 cut(s)	253
Eco130I	CCWWGG	1 cut(s)	211
Eco147I	AGGCCT	1 cut(s)	270
Eco31I	GGTCTC	1 cut(s)	233
Eco57I	CTGAAG	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	211
EcoT22I	ATGCAT	1 cut(s)	244
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	3 cut(s)	27, 102, 610
FaqI	GGGAC	1 cut(s)	53
FatI	CATG	3 cut(s)	23, 98, 606
FauNDI	CATATG	1 cut(s)	295
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	5 cut(s)	96, 120, 179, 374, 416
FokI	GGATG	3 cut(s)	228, 251, 320
Fsp4HI	GCNGC	5 cut(s)	96, 120, 179, 374, 416
FspBI	CTAG	2 cut(s)	212, 627
GluI	GCNGC	5 cut(s)	96, 120, 179, 374, 416
GsaI	CCCAGC	1 cut(s)	106
HaeIII	GGCC	1 cut(s)	270
HapII	CCGG	1 cut(s)	419
Hin1II	CATG	3 cut(s)	27, 102, 610
HinfI	GANTC	2 cut(s)	32, 82
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	2 cut(s)	265, 605
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	81, 620
Hpy188III	TCNNGA	3 cut(s)	11, 323, 584
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	125, 590, 632
HpyCH4III	ACNGT	3 cut(s)	92, 127, 488
HpyCH4IV	ACGT	1 cut(s)	252
HpyCH4V	TGCA	6 cut(s)	98, 140, 178, 219, 242, 318
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	2 cut(s)	160, 303
HpySE526I	ACGT	1 cut(s)	252
Hsp92II	CATG	3 cut(s)	27, 102, 610
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	76, 615
Lsp1109I	GCAGC	4 cut(s)	82, 131, 190, 427
LweI	GCATC	3 cut(s)	206, 229, 289
MaeI	CTAG	2 cut(s)	212, 627
MaeII	ACGT	1 cut(s)	252
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	2 cut(s)	78, 617
MboI	GATC	2 cut(s)	76, 615
MboII	GAAGA	2 cut(s)	62, 580
MluCI	AATT	3 cut(s)	286, 338, 678
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	505
MnlI	CCTC	5 cut(s)	13, 260, 281, 593, 614
Mph1103I	ATGCAT	1 cut(s)	244
MseI	TTAA	3 cut(s)	342, 435, 552
MslI	CAYNNNNRTG	1 cut(s)	611
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MvnI	CGCG	1 cut(s)	369
MwoI	GCNNNNNNNGC	1 cut(s)	104
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	76, 615
NlaIII	CATG	3 cut(s)	27, 102, 610
NsiI	ATGCAT	1 cut(s)	244
NspI	RCATGY	2 cut(s)	27, 102
PaeI	GCATGC	2 cut(s)	27, 102
PasI	CCCWGGG	1 cut(s)	71
PceI	AGGCCT	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	97, 121, 180, 375, 417
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	253
Psp6I	CCWGG	1 cut(s)	70
PspFI	CCCAGC	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	70
RsaI	GTAC	3 cut(s)	89, 557, 605
RsaNI	GTAC	3 cut(s)	88, 556, 604
RseI	CAYNNNNRTG	1 cut(s)	611
SaqAI	TTAA	3 cut(s)	342, 435, 552
SatI	GCNGC	5 cut(s)	96, 120, 179, 374, 416
Sau3AI	GATC	2 cut(s)	76, 615
ScaI	AGTACT	1 cut(s)	557
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	5 cut(s)	161, 255, 459, 643, 667
SfaNI	GCATC	3 cut(s)	206, 229, 289
SmiMI	CAYNNNNRTG	1 cut(s)	611
SnaBI	TACGTA	1 cut(s)	253
SphI	GCATGC	2 cut(s)	27, 102
Sse9I	AATT	3 cut(s)	286, 338, 678
SseBI	AGGCCT	1 cut(s)	270
SsiI	CCGC	4 cut(s)	117, 225, 374, 425
SspMI	CTAG	2 cut(s)	212, 627
StuI	AGGCCT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	70
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	3 cut(s)	92, 127, 488
TaiI	ACGT	1 cut(s)	255
TaqI	TCGA	2 cut(s)	324, 429
TasI	AATT	3 cut(s)	286, 338, 678
TatI	WGTACW	1 cut(s)	555
TauI	GCSGC	1 cut(s)	376
TfiI	GAWTC	1 cut(s)	32
Tru1I	TTAA	3 cut(s)	342, 435, 552
Tru9I	TTAA	3 cut(s)	342, 435, 552
TscAI	CASTG	4 cut(s)	132, 226, 283, 469
TseI	GCWGC	4 cut(s)	95, 119, 178, 415
TspDTI	ATGAA	2 cut(s)	45, 640
TspGWI	ACGGA	6 cut(s)	62, 75, 163, 251, 274, 279
TspRI	CASTG	4 cut(s)	132, 226, 283, 469
XceI	RCATGY	2 cut(s)	27, 102
XcmI	CCANNNNNNNNNTGG	1 cut(s)	526
XmaJI	CCTAGG	1 cut(s)	211
XspI	CTAG	2 cut(s)	212, 627
ZrmI	AGTACT	1 cut(s)	557
Zsp2I	ATGCAT	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.