Rorug03G0157900

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0003327
Physical Location & Seq
Forward (+)
13006082 .. 13014029
7948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0157900.1

Sequence Viewer

Length: 990 bp
ATGTCGTTGATAGCAAATTTTGAGTCCAGGTATCACATTGATACCATTGTAAGTCCGGGTATCAACTTGGCCGGTGCACCAGAGTTGATGTTTGATCCTTATGCAAGGATAGTGTATGACTACTTGGGAGGAATAGAAGATCTTAGAAAAGCTCAAGTCCAAACTGTTGTACCAGCAAGTACTTCATTTCGAGAGGATTGTGCTCGCATCCTACGTGCCATAAGAATTGCTGCTCGTTTAGGATTCCGTATTTCAAAGGAAACAGCTAATTCTATTAAAAATTTATCCTACTCAATTCTTAGGCTTGATAAGGGACGGATCCTCATGGAAATGAATTATATGATGGCGTATGGTTCTGCTGAAGCTTCCCATTCGATTATTATGGAAATTTGGACTTCTGGAACTACTTCTACCCATCCAGGTATGCAGCTGCATATTTTGTTCGCCATGGATTTCGAAGATGAGACAAAAGGTCTAACATGCTTTTGGATTGCAATCTTAGCATTGCATAAAGCACTCTCCGAACAACCTCGAGATGCGTTGGTGGTTGCTGCATTTACCCTTGCTGTTCACAATGGTGGAGATATGTCAGAAGCAGTGGACATAGCCAGGACTATCACTAAACCACATGACGGTAGCTTTCATGAATTATTAGAACCGAAGAGTTTGGACTCTGAAGCATATAATAAAGAGGTTAAGGATCTTGAGGCATCTTTTAGGCTGGCACTCGATCATATGACTGATCAGCAAATTGTCTCAGAGACCATGGCAGCGTACCCACAAGCACCGTTTTCTGATCTGGTATTTATACCATGGGGATTATCTTTGAGGGTCTCCCAGATTTTCAACTGCGTAAAAGTAGGTGGGAAGCTGGGATTTGTGGCAAAGCAAGGCAGCAAGATTGACTACGAGTCATTAGCTCAGGGCAGCCTGCCAGAGGTTCGGCATATTTTTGCAAGAGTCGTGTTTGATACCATCTATCCTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

329

Amino Acids

36.61

Weight (kDa)

5.7

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PolyA_pol_RNAbd PF12627 81 - 123 8.9e-07 Probable RNA and SrmB- binding site of polymerase A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 89, 313, 326, 708
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 3 cut(s) 16, 280, 387
AcuI CTGAAG 2 cut(s) 381, 696
AfaI GTAC 3 cut(s) 171, 181, 776
AfiI CCNNNNNNNGG 2 cut(s) 632, 937
AgsI TTSAA 2 cut(s) 255, 847
AhdI GACNNNNNGTC 2 cut(s) 471, 910
AjnI CCWGG 3 cut(s) 26, 418, 608
AleI CACNNNNGTG 1 cut(s) 576
AluBI AGCT 7 cut(s) 152, 266, 365, 430, 639, 871, 920
AluI AGCT 7 cut(s) 152, 266, 365, 430, 639, 871, 920
Alw21I GWGCWC 2 cut(s) 79, 205
Alw26I GTCTC 4 cut(s) 458, 755, 760, 838
Alw44I GTGCAC 1 cut(s) 75
AlwI GGATC 4 cut(s) 89, 313, 326, 708
Ama87I CYCGRG 1 cut(s) 531
AoxI GGCC 1 cut(s) 69
ApaLI GTGCAC 1 cut(s) 75
ApeKI GCWGC 7 cut(s) 230, 427, 430, 551, 770, 894, 927
ApoI RAATTY 3 cut(s) 16, 280, 387
ArsI GACNNNNNNTTYG 2 cut(s) 8, 40
Asp700I GAANNNNTTC 1 cut(s) 406
AsuC2I CCSGG 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 456
AvaI CYCGRG 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 79
BaeI ACNNNNGTAYC 4 cut(s) 33, 66, 153, 186
BamHI GGATCC 1 cut(s) 318
Bbv12I GWGCWC 2 cut(s) 79, 205
BbvI GCAGC 7 cut(s) 217, 417, 439, 538, 782, 906, 939
BccI CCATC 3 cut(s) 337, 423, 983
BciT130I CCWGG 3 cut(s) 28, 420, 610
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 4 cut(s) 458, 755, 760, 838
BglII AGATCT 1 cut(s) 139
BisI GCNGC 7 cut(s) 231, 428, 431, 552, 771, 895, 928
BlsI GCNGC 7 cut(s) 232, 429, 432, 553, 772, 896, 929
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 4 cut(s) 28, 57, 420, 610
BmeRI GACNNNNNGTC 2 cut(s) 471, 910
BmeT110I CYCGRG 1 cut(s) 531
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 4 cut(s) 28, 57, 420, 610
BmsI GCATC 3 cut(s) 216, 526, 719
Bpu10I CCTNAGC 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 456
BpuEI CTTGAG 2 cut(s) 138, 725
BpuMI CCSGG 1 cut(s) 57
BsaAI YACGTR 1 cut(s) 215
BsaBI GATNNNNATC 1 cut(s) 494
BsaI GGTCTC 2 cut(s) 755, 838
BsaJI CCNNGG 3 cut(s) 447, 765, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 632, 937
Bse118I RCCGGY 1 cut(s) 71
Bse3DI GCAATG 1 cut(s) 503
Bse8I GATNNNNATC 1 cut(s) 494
BseBI CCWGG 3 cut(s) 28, 420, 610
BseDI CCNNGG 3 cut(s) 447, 765, 812
BseGI GGATG 2 cut(s) 207, 415
BseJI GATNNNNATC 1 cut(s) 494
BseLI CCNNNNNNNGG 2 cut(s) 632, 937
BseMI GCAATG 1 cut(s) 503
BseMII CTCAG 2 cut(s) 771, 935
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 7 cut(s) 217, 417, 439, 538, 782, 906, 939
BseYI CCCAGC 1 cut(s) 871
BshFI GGCC 1 cut(s) 71
BsiHKAI GWGCWC 2 cut(s) 79, 205
BsiHKCI CYCGRG 1 cut(s) 531
BsiSI CCGG 2 cut(s) 56, 72
BslFI GGGAC 1 cut(s) 327
BslI CCNNNNNNNGG 2 cut(s) 632, 937
BsmAI GTCTC 4 cut(s) 458, 755, 760, 838
BsmFI GGGAC 1 cut(s) 327
BsnI GGCC 1 cut(s) 71
Bso31I GGTCTC 2 cut(s) 755, 838
BsoBI CYCGRG 1 cut(s) 531
Bsp119I TTCGAA 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 79, 205
Bsp143I GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
Bsp19I CCATGG 3 cut(s) 447, 765, 812
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 2 cut(s) 770, 934
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 1 cut(s) 320
BspPI GGATC 4 cut(s) 89, 313, 326, 708
BspT104I TTCGAA 1 cut(s) 456
BspTNI GGTCTC 2 cut(s) 755, 838
BsrDI GCAATG 1 cut(s) 503
BsrFI RCCGGY 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 447, 765, 812
BssMI GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
BssT1I CCWWGG 3 cut(s) 447, 765, 812
Bst2UI CCWGG 3 cut(s) 28, 420, 610
Bst4CI ACNGT 3 cut(s) 166, 635, 789
Bst6I CTCTTC 1 cut(s) 656
BstBAI YACGTR 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 3 cut(s) 205, 723, 932
BstDEI CTNAG 5 cut(s) 143, 299, 499, 757, 921
BstDSI CCRYGG 3 cut(s) 447, 765, 812
BstENI CCTNNNNNAGG 1 cut(s) 935
BstF5I GGATG 2 cut(s) 207, 415
BstKTI GATC 7 cut(s) 97, 142, 321, 703, 733, 745, 799
BstMAI GTCTC 4 cut(s) 458, 755, 760, 838
BstMBI GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
BstMWI GCNNNNNNNGC 1 cut(s) 500
BstNI CCWGG 3 cut(s) 28, 420, 610
BstNSI RCATGY 1 cut(s) 483
BstSCI CCNGG 4 cut(s) 26, 55, 418, 608
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 7 cut(s) 217, 417, 439, 538, 782, 906, 939
BstX2I RGATCY 3 cut(s) 139, 318, 700
BstYI RGATCY 3 cut(s) 139, 318, 700
BsuRI GGCC 1 cut(s) 71
BtgI CCRYGG 3 cut(s) 447, 765, 812
BtsCI GGATG 2 cut(s) 207, 415
BtsI GCAGTG 1 cut(s) 603
BtsIMutI CAGTG 1 cut(s) 603
Cac8I GCNNGC 3 cut(s) 205, 723, 932
CciI TCATGA 1 cut(s) 643
Cfr10I RCCGGY 1 cut(s) 71
Csp6I GTAC 3 cut(s) 170, 180, 775
CviAII CATG 7 cut(s) 325, 448, 480, 629, 644, 766, 813
CviQI GTAC 3 cut(s) 170, 180, 775
DdeI CTNAG 5 cut(s) 143, 299, 499, 757, 921
DpnI GATC 7 cut(s) 96, 141, 320, 702, 732, 744, 798
DpnII GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
DriI GACNNNNNGTC 2 cut(s) 471, 910
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 656
Eam1105I GACNNNNNGTC 2 cut(s) 471, 910
EarI CTCTTC 1 cut(s) 656
Eco130I CCWWGG 3 cut(s) 447, 765, 812
Eco31I GGTCTC 2 cut(s) 755, 838
Eco57I CTGAAG 2 cut(s) 381, 696
Eco88I CYCGRG 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 935
EcoRII CCWGG 3 cut(s) 26, 418, 608
EcoT14I CCWWGG 3 cut(s) 447, 765, 812
ErhI CCWWGG 3 cut(s) 447, 765, 812
FaeI CATG 7 cut(s) 328, 451, 483, 632, 647, 769, 816
FaqI GGGAC 1 cut(s) 327
FatI CATG 7 cut(s) 324, 447, 479, 628, 643, 765, 812
FauNDI CATATG 1 cut(s) 735
FbaI TGATCA 1 cut(s) 742
Fnu4HI GCNGC 7 cut(s) 231, 428, 431, 552, 771, 895, 928
FokI GGATG 2 cut(s) 194, 402
Fsp4HI GCNGC 7 cut(s) 231, 428, 431, 552, 771, 895, 928
GluI GCNGC 7 cut(s) 231, 428, 431, 552, 771, 895, 928
GsaI CCCAGC 1 cut(s) 875
HaeIII GGCC 1 cut(s) 71
HapII CCGG 2 cut(s) 56, 72
Hin1II CATG 7 cut(s) 328, 451, 483, 632, 647, 769, 816
HindIII AAGCTT 1 cut(s) 363
HinfI GANTC 5 cut(s) 23, 243, 671, 911, 960
HpaII CCGG 2 cut(s) 56, 72
Hpy166II GTNNAC 3 cut(s) 77, 571, 601
Hpy188I TCNGA 5 cut(s) 523, 592, 676, 760, 796
Hpy188III TCNNGA 5 cut(s) 191, 399, 533, 644, 704
Hpy8I GTNNAC 3 cut(s) 77, 571, 601
HpyCH4III ACNGT 3 cut(s) 166, 635, 789
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 8 cut(s) 77, 104, 427, 433, 494, 508, 554, 956
HpyF10VI GCNNNNNNNGC 1 cut(s) 500
HpyF3I CTNAG 5 cut(s) 143, 299, 499, 757, 921
HpySE526I ACGT 1 cut(s) 214
Hsp92II CATG 7 cut(s) 328, 451, 483, 632, 647, 769, 816
Ksp22I TGATCA 1 cut(s) 742
Kzo9I GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
Lsp1109I GCAGC 7 cut(s) 217, 417, 439, 538, 782, 906, 939
LweI GCATC 3 cut(s) 216, 526, 719
MaeII ACGT 1 cut(s) 214
MalI GATC 7 cut(s) 96, 141, 320, 702, 732, 744, 798
MboI GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
MboII GAAGA 3 cut(s) 149, 470, 673
MflI RGATCY 3 cut(s) 139, 318, 700
MhlI GDGCHC 2 cut(s) 79, 205
MluCI AATT 9 cut(s) 16, 225, 268, 280, 294, 334, 387, 647, 750
MlyI GAGTC 4 cut(s) 32, 665, 920, 969
MnlI CCTC 8 cut(s) 122, 187, 332, 540, 685, 700, 822, 931
MroXI GAANNNNTTC 1 cut(s) 406
MseI TTAA 2 cut(s) 276, 696
MslI CAYNNNNRTG 2 cut(s) 329, 576
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 2 cut(s) 56, 72
MspR9I CCNGG 4 cut(s) 28, 57, 420, 610
MvaI CCWGG 3 cut(s) 28, 420, 610
MwoI GCNNNNNNNGC 1 cut(s) 500
NciI CCSGG 1 cut(s) 57
NcoI CCATGG 3 cut(s) 447, 765, 812
NdeI CATATG 1 cut(s) 735
NdeII GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
NlaIII CATG 7 cut(s) 328, 451, 483, 632, 647, 769, 816
NlaIV GGNNCC 1 cut(s) 320
NspI RCATGY 1 cut(s) 483
NspV TTCGAA 1 cut(s) 456
OliI CACNNNNGTG 1 cut(s) 576
PaeR7I CTCGAG 1 cut(s) 531
PagI TCATGA 1 cut(s) 643
PcsI WCGNNNNNNNCGW 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 406
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 7 cut(s) 232, 429, 432, 553, 772, 896, 929
PleI GAGTC 4 cut(s) 31, 665, 919, 968
PpsI GAGTC 4 cut(s) 31, 665, 919, 968
Ppu21I YACGTR 1 cut(s) 215
Psp6I CCWGG 3 cut(s) 26, 418, 608
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 3 cut(s) 26, 418, 608
PspN4I GGNNCC 1 cut(s) 320
PsrI GAACNNNNNNTAC 2 cut(s) 394, 426
PsuI RGATCY 3 cut(s) 139, 318, 700
PvuII CAGCTG 1 cut(s) 430
RsaI GTAC 3 cut(s) 171, 181, 776
RsaNI GTAC 3 cut(s) 170, 180, 775
RseI CAYNNNNRTG 2 cut(s) 329, 576
SaqAI TTAA 2 cut(s) 276, 696
SatI GCNGC 7 cut(s) 231, 428, 431, 552, 771, 895, 928
Sau3AI GATC 7 cut(s) 94, 139, 318, 700, 730, 742, 796
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 4 cut(s) 32, 665, 920, 969
ScrFI CCNGG 4 cut(s) 28, 57, 420, 610
SduI GDGCHC 2 cut(s) 79, 205
SfaNI GCATC 3 cut(s) 216, 526, 719
Sfr274I CTCGAG 1 cut(s) 531
SfuI TTCGAA 1 cut(s) 456
SlaI CTCGAG 1 cut(s) 531
SmiMI CAYNNNNRTG 2 cut(s) 329, 576
SmlI CTYRAG 3 cut(s) 153, 531, 704
SmoI CTYRAG 3 cut(s) 153, 531, 704
Sse9I AATT 9 cut(s) 16, 225, 268, 280, 294, 334, 387, 647, 750
StyD4I CCNGG 4 cut(s) 26, 55, 418, 608
StyI CCWWGG 3 cut(s) 447, 765, 812
TaaI ACNGT 3 cut(s) 166, 635, 789
TaiI ACGT 1 cut(s) 217
TaqI TCGA 5 cut(s) 190, 374, 456, 532, 729
TasI AATT 9 cut(s) 16, 225, 268, 280, 294, 334, 387, 647, 750
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 2 cut(s) 276, 696
Tru9I TTAA 2 cut(s) 276, 696
TscAI CASTG 1 cut(s) 603
TseI GCWGC 7 cut(s) 230, 427, 430, 551, 770, 894, 927
TspDTI ATGAA 4 cut(s) 174, 347, 632, 660
TspGWI ACGGA 2 cut(s) 236, 331
TspRI CASTG 1 cut(s) 603
VneI GTGCAC 1 cut(s) 75
XagI CCTNNNNNAGG 1 cut(s) 935
XapI RAATTY 3 cut(s) 16, 280, 387
XceI RCATGY 1 cut(s) 483
XhoI CTCGAG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 406
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.