Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000410.1

Orthogroup ID

OG0003327

Physical Location & Seq

Genomic Coordinates Forward (+)

44485 .. 46360

Gene Structure 1876 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000410.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

atgggttatgtcgataacagaaacctgcttaccgtaacgatcatgatgattatcttctcatcaacatttggccttagaaaactgaacggtcggcgggatgatgcgaacgacgatgttgccaagatcttcaacgactggatcatacaacaccaaaggatgtacttgaacgagtctcacaaaaatgagcgctttcagatattcaaaaccaactgggaatatgtcgaaaacttcaagaagctcagtaataagacctatactgttggtctcaatgagttctctgacttaaccatggaagaattccaggtaacttatggttgcagcagagatcccattcccaacagtctccacttaaactcgacctcctcatctcctgatgtcagcatcgagtatcttgactatgatacatgcgatgaaacaatcgactggacgaaacaaggatatgtgtcccgccctgggttgcaaacaaaatgcggagtggaagggattgcacaaatcaggaacagtgaaaacccaactcgactgtccgtgcagcagctcgtagactgtgataaaaagtataacgaaggctgcgaaggtggtctcgcaatagatgcctatgactacatactaaggaacggaggtatcaccagtgccgaaaattacccatatactgattcggaaggacagtgcgacctcgctaaggaaaaacaatttgaggtaagtatcactgggtttactcttgtgccgccgaatgacgagtttgagctgatgaagtcagtatgcatgcagcctgtaacggccagaattacggtgacaaatggacttcggcactacactggtggagtatttagtgaagagtgtggaacggagttagggcacgctgtgaccattgttggaatggggaagactgatgacggcgttaagtattggaaattgatgaattcgtggggtgaggggtggggcgaaggagggtatattagaattctcagaggaactggcaagccagaaggtcattgtggaatcaatattgaaccttcttatcccgatattgcgcgcgaccttgaggtgaagcaagggggtgactcggcggcgaagcaaggacccaatccggaggagaaacaagctcacaaccccgacggcgaagcaagcgctctacccagcggcaaagcaagcgcgcgaccctgcggagaagcaagggtgcgacctcgacggcgaagcaagcgctctaccagcggcgaagtaagcgcgcgacccggcgaagaagcaagggcgcgacctcgacggcgaaccaagggcgagaccctagcagcgaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418

Pfam Domains

Protein Families

Inhibitor_I29 Peptidase_C1

Protein Analysis

431

Amino Acids

48.1

Weight (kDa)

5.7

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g12600 FvH4_4g12601
rosa_chinensis	RchiOBHm_Chr3g0476941 RchiOBHm_Chr3g0476971 RchiOBHm_Chr5g0009761 RchiOBHm_Chr5g0034711
rosa_laevigata	RLG00000015202 RLG00000023743 RLG00000023744 RLG00000031693
rosa_multiflora	Rmu_sc0000288.1_g000023 Rmu_sc0000410.1_g000010
rosa_roxburghii	Rroxscaffold_1G00066450 Rroxscaffold_6G00404920
rosa_rugosa	Rorug03G0003900 Rorug03G0157800 Rorug03G0157900 Rorug04G0445500
rosa_samantha	Rh3AG207900 Rh3BG240400 Rh3BG240600 Rh3BG240800 Rh3BG240900 Rh3CG235200 Rh3CG235400 Rh3DG234000 Rh3DG234200 Rh5AG008500 Rh5AG008900 Rh5AG077200 Rh5CG090300 Rh5DG009400 Rh5DG072700
rosa_wichuraiana	Rw3G018960 Rw3G018970 Rw3G019000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	33
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
AccIII	TCCGGA	1 cut(s)	1087
AciI	CCGC	8 cut(s)	94, 448, 471, 725, 1067, 1140, 1164, 1212
AclWI	GGATC	2 cut(s)	146, 320
AcoI	YGGCCR	1 cut(s)	777
AcsI	RAATTY	3 cut(s)	296, 919, 960
AdeI	CACNNNGTG	1 cut(s)	862
AfaI	GTAC	1 cut(s)	161
AfeI	AGCGCT	3 cut(s)	188, 1129, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	453, 679
AgsI	TTSAA	5 cut(s)	130, 166, 202, 232, 1010
AjnI	CCWGG	2 cut(s)	300, 451
AluBI	AGCT	4 cut(s)	238, 535, 745, 1103
AluI	AGCT	4 cut(s)	238, 535, 745, 1103
Alw26I	GTCTC	5 cut(s)	177, 269, 347, 584, 1271
AlwI	GGATC	2 cut(s)	146, 320
Aor13HI	TCCGGA	1 cut(s)	1087
Aor51HI	AGCGCT	3 cut(s)	188, 1129, 1202
AoxI	GGCC	2 cut(s)	70, 777
ApeKI	GCWGC	6 cut(s)	318, 529, 532, 567, 766, 1286
ApoI	RAATTY	3 cut(s)	296, 919, 960
AspS9I	GGNCC	1 cut(s)	1079
AsuC2I	CCSGG	1 cut(s)	1233
AsuHPI	GGTGA	5 cut(s)	616, 802, 941, 1057, 1070
AvaII	GGWCC	1 cut(s)	1079
BaeGI	GKGCMC	1 cut(s)	858
BaeI	ACNNNNGTAYC	2 cut(s)	604, 637
BbsI	GAAGAC	1 cut(s)	890
BbvI	GCAGC	5 cut(s)	330, 541, 544, 554, 778
BceAI	ACGGC	5 cut(s)	792, 910, 1132, 1205, 1277
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	302, 453
BcnI	CCSGG	1 cut(s)	1233
BcoDI	GTCTC	5 cut(s)	177, 269, 347, 584, 1271
BfaI	CTAG	1 cut(s)	1283
BfoI	RGCGCY	3 cut(s)	190, 1131, 1204
BfuAI	ACCTGC	1 cut(s)	33
BglII	AGATCT	1 cut(s)	123
Bme1390I	CCNGG	3 cut(s)	302, 453, 1233
Bme18I	GGWCC	1 cut(s)	1079
BmgT120I	GGNCC	1 cut(s)	1079
BmiI	GGNNCC	1 cut(s)	1081
BmrFI	CCNGG	3 cut(s)	302, 453, 1233
BmrI	ACTGGG	2 cut(s)	220, 717
BmsI	GCATC	3 cut(s)	91, 390, 580
BmuI	ACTGGG	2 cut(s)	220, 717
BpiI	GAAGAC	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	678
BpuEI	CTTGAG	1 cut(s)	1061
BpuMI	CCSGG	1 cut(s)	1233
BsaBI	GATNNNNATC	1 cut(s)	50
BsaI	GGTCTC	3 cut(s)	269, 584, 1271
BsaJI	CCNNGG	4 cut(s)	288, 451, 452, 1269
BsaWI	WCCGGW	1 cut(s)	1087
BsaXI	ACNNNNNCTCC	2 cut(s)	344, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	453, 679
Bse1I	ACTGG	7 cut(s)	140, 215, 428, 627, 712, 820, 979
Bse8I	GATNNNNATC	1 cut(s)	50
BseAI	TCCGGA	1 cut(s)	1087
BseBI	CCWGG	2 cut(s)	302, 453
BseDI	CCNNGG	4 cut(s)	288, 451, 452, 1269
BseGI	GGATG	2 cut(s)	103, 162
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	2 cut(s)	453, 679
BseMII	CTCAG	2 cut(s)	253, 979
BseNI	ACTGG	7 cut(s)	140, 215, 428, 627, 712, 820, 979
BsePI	GCGCGC	3 cut(s)	1031, 1152, 1224
BseRI	GAGGAG	2 cut(s)	352, 1106
BseSI	GKGCMC	1 cut(s)	858
BseXI	GCAGC	5 cut(s)	330, 541, 544, 554, 778
BseYI	CCCAGC	1 cut(s)	1136
BsgI	GTGCAG	1 cut(s)	548
Bsh1236I	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	2 cut(s)	72, 779
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	2 cut(s)	1088, 1233
BslFI	GGGAC	1 cut(s)	430
BslI	CCNNNNNNNGG	2 cut(s)	453, 679
BsmAI	GTCTC	5 cut(s)	177, 269, 347, 584, 1271
BsmFI	GGGAC	1 cut(s)	430
BsnI	GGCC	2 cut(s)	72, 779
Bso31I	GGTCTC	3 cut(s)	269, 584, 1271
Bsp1286I	GDGCHC	1 cut(s)	858
Bsp13I	TCCGGA	1 cut(s)	1087
Bsp143I	GATC	4 cut(s)	39, 123, 138, 325
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	8 cut(s)	94, 448, 471, 725, 1067, 1140, 1164, 1212
BspANI	GGCC	2 cut(s)	72, 779
BspCNI	CTCAG	2 cut(s)	252, 978
BspEI	TCCGGA	1 cut(s)	1087
BspFNI	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	1081
BspMI	ACCTGC	1 cut(s)	33
BspPI	GGATC	2 cut(s)	146, 320
BspTNI	GGTCTC	3 cut(s)	269, 584, 1271
BsrI	ACTGG	7 cut(s)	140, 215, 428, 627, 712, 820, 979
BssECI	CCNNGG	4 cut(s)	288, 451, 452, 1269
BssHII	GCGCGC	3 cut(s)	1031, 1152, 1224
BssMI	GATC	4 cut(s)	39, 123, 138, 325
BssT1I	CCWWGG	2 cut(s)	288, 1269
Bst2UI	CCWGG	2 cut(s)	302, 453
Bst4CI	ACNGT	9 cut(s)	34, 89, 259, 341, 503, 522, 545, 666, 790
Bst6I	CTCTTC	1 cut(s)	828
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstC8I	GCNNGC	9 cut(s)	764, 858, 980, 1033, 1126, 1150, 1154, 1199, 1226
BstDEI	CTNAG	5 cut(s)	74, 239, 608, 678, 965
BstDSI	CCRYGG	1 cut(s)	288
BstENI	CCTNNNNNAGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	103, 162
BstFNI	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
BstH2I	RGCGCY	3 cut(s)	190, 1131, 1204
BstKTI	GATC	4 cut(s)	42, 126, 141, 328
BstMAI	GTCTC	5 cut(s)	177, 269, 347, 584, 1271
BstMBI	GATC	4 cut(s)	39, 123, 138, 325
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	6 cut(s)	590, 1125, 1149, 1198, 1209, 1221
BstNI	CCWGG	2 cut(s)	302, 453
BstNSI	RCATGY	2 cut(s)	408, 766
BstSCI	CCNGG	3 cut(s)	300, 451, 1231
BstSLI	GKGCMC	1 cut(s)	858
BstUI	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
BstV1I	GCAGC	5 cut(s)	330, 541, 544, 554, 778
BstV2I	GAAGAC	1 cut(s)	890
BstX2I	RGATCY	2 cut(s)	123, 325
BstYI	RGATCY	2 cut(s)	123, 325
BsuRI	GGCC	2 cut(s)	72, 779
BtgI	CCRYGG	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	423
BtsCI	GGATG	2 cut(s)	103, 162
BtsIMutI	CAGTG	5 cut(s)	508, 634, 671, 705, 813
BveI	ACCTGC	1 cut(s)	33
Cac8I	GCNNGC	9 cut(s)	764, 858, 980, 1033, 1126, 1150, 1154, 1199, 1226
CciI	TCATGA	1 cut(s)	42
Cfr13I	GGNCC	1 cut(s)	1079
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	4 cut(s)	43, 289, 405, 763
CviJI	RGCY	9 cut(s)	72, 238, 535, 567, 745, 769, 779, 982, 1103
CviKI_1	RGCY	9 cut(s)	72, 238, 535, 567, 745, 769, 779, 982, 1103
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	5 cut(s)	74, 239, 608, 678, 965
DpnI	GATC	4 cut(s)	41, 125, 140, 327
DpnII	GATC	4 cut(s)	39, 123, 138, 325
DraIII	CACNNNGTG	1 cut(s)	862
EaeI	YGGCCR	1 cut(s)	777
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
Eco130I	CCWWGG	2 cut(s)	288, 1269
Eco31I	GGTCTC	3 cut(s)	269, 584, 1271
Eco47I	GGWCC	1 cut(s)	1079
Eco47III	AGCGCT	3 cut(s)	188, 1129, 1202
EcoNI	CCTNNNNNAGG	1 cut(s)	677
EcoO109I	RGGNCCY	1 cut(s)	1079
EcoRI	GAATTC	3 cut(s)	296, 919, 960
EcoRII	CCWGG	2 cut(s)	300, 451
EcoT14I	CCWWGG	2 cut(s)	288, 1269
EcoT22I	ATGCAT	1 cut(s)	764
ErhI	CCWWGG	2 cut(s)	288, 1269
FaeI	CATG	4 cut(s)	46, 292, 408, 766
FaqI	GGGAC	1 cut(s)	430
FatI	CATG	4 cut(s)	42, 288, 404, 762
FauI	CCCGC	2 cut(s)	87, 455
FblI	GTMKAC	1 cut(s)	540
FokI	GGATG	2 cut(s)	110, 169
FspBI	CTAG	1 cut(s)	1283
GsaI	CCCAGC	1 cut(s)	1140
HaeII	RGCGCY	3 cut(s)	190, 1131, 1204
HaeIII	GGCC	2 cut(s)	72, 779
HapII	CCGG	2 cut(s)	1088, 1233
Hin1II	CATG	4 cut(s)	46, 292, 408, 766
HinfI	GANTC	4 cut(s)	170, 653, 999, 1061
HpaII	CCGG	2 cut(s)	1088, 1233
HphI	GGTGA	5 cut(s)	616, 802, 941, 1057, 1070
Hpy166II	GTNNAC	2 cut(s)	541, 714
Hpy188I	TCNGA	4 cut(s)	195, 280, 658, 968
Hpy188III	TCNNGA	7 cut(s)	43, 232, 371, 392, 496, 1022, 1088
Hpy8I	GTNNAC	2 cut(s)	541, 714
Hpy99I	CGWCG	4 cut(s)	113, 1118, 1191, 1263
HpyAV	CCTTC	7 cut(s)	473, 557, 566, 653, 938, 980, 1023
HpyCH4III	ACNGT	9 cut(s)	34, 89, 259, 341, 503, 522, 545, 666, 790
HpyCH4V	TGCA	6 cut(s)	318, 460, 488, 529, 762, 766
HpyF10VI	GCNNNNNNNGC	6 cut(s)	590, 1125, 1149, 1198, 1209, 1221
HpyF3I	CTNAG	5 cut(s)	74, 239, 608, 678, 965
Hsp92II	CATG	4 cut(s)	46, 292, 408, 766
Kpn2I	TCCGGA	1 cut(s)	1087
Kzo9I	GATC	4 cut(s)	39, 123, 138, 325
Lsp1109I	GCAGC	5 cut(s)	330, 541, 544, 554, 778
LweI	GCATC	3 cut(s)	91, 390, 580
MaeI	CTAG	1 cut(s)	1283
MaeIII	GTNAC	6 cut(s)	34, 304, 772, 790, 862, 1058
MalI	GATC	4 cut(s)	41, 125, 140, 327
MboI	GATC	4 cut(s)	39, 123, 138, 325
MboII	GAAGA	6 cut(s)	46, 118, 305, 845, 895, 1250
MflI	RGATCY	2 cut(s)	123, 325
MhlI	GDGCHC	1 cut(s)	858
MluCI	AATT	7 cut(s)	296, 637, 689, 783, 911, 919, 960
MlyI	GAGTC	2 cut(s)	179, 1055
MmeI	TCCRAC	1 cut(s)	853
Mph1103I	ATGCAT	1 cut(s)	764
MroI	TCCGGA	1 cut(s)	1087
MseI	TTAA	3 cut(s)	284, 350, 900
MslI	CAYNNNNRTG	1 cut(s)	180
MspA1I	CMGCKG	2 cut(s)	1140, 1212
MspI	CCGG	2 cut(s)	1088, 1233
MspR9I	CCNGG	3 cut(s)	302, 453, 1233
MvaI	CCWGG	2 cut(s)	302, 453
MvnI	CGCG	7 cut(s)	1033, 1035, 1154, 1156, 1226, 1228, 1252
MwoI	GCNNNNNNNGC	6 cut(s)	590, 1125, 1149, 1198, 1209, 1221
NciI	CCSGG	1 cut(s)	1233
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	4 cut(s)	39, 123, 138, 325
NlaIII	CATG	4 cut(s)	46, 292, 408, 766
NlaIV	GGNNCC	1 cut(s)	1081
NmeAIII	GCCGAG	1 cut(s)	1043
NmuCI	GTSAC	3 cut(s)	790, 862, 1058
NsiI	ATGCAT	1 cut(s)	764
NspI	RCATGY	2 cut(s)	408, 766
PaeI	GCATGC	1 cut(s)	766
PagI	TCATGA	1 cut(s)	42
PasI	CCCWGGG	1 cut(s)	452
PauI	GCGCGC	3 cut(s)	1031, 1152, 1224
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	653, 999
PleI	GAGTC	2 cut(s)	178, 1055
PpsI	GAGTC	2 cut(s)	178, 1055
PpuMI	RGGWCCY	1 cut(s)	1079
Psp5II	RGGWCCY	1 cut(s)	1079
Psp6I	CCWGG	2 cut(s)	300, 451
PspFI	CCCAGC	1 cut(s)	1136
PspGI	CCWGG	2 cut(s)	300, 451
PspN4I	GGNNCC	1 cut(s)	1081
PspPI	GGNCC	1 cut(s)	1079
PspPPI	RGGWCCY	1 cut(s)	1079
PsuI	RGATCY	2 cut(s)	123, 325
PteI	GCGCGC	3 cut(s)	1031, 1152, 1224
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	180
SaqAI	TTAA	3 cut(s)	284, 350, 900
Sau3AI	GATC	4 cut(s)	39, 123, 138, 325
Sau96I	GGNCC	1 cut(s)	1079
SchI	GAGTC	2 cut(s)	179, 1055
ScrFI	CCNGG	3 cut(s)	302, 453, 1233
SduI	GDGCHC	1 cut(s)	858
SfaNI	GCATC	3 cut(s)	91, 390, 580
SinI	GGWCC	1 cut(s)	1079
SmiMI	CAYNNNNRTG	1 cut(s)	180
SmlI	CTYRAG	1 cut(s)	1040
SmoI	CTYRAG	1 cut(s)	1040
SphI	GCATGC	1 cut(s)	766
Sse9I	AATT	7 cut(s)	296, 637, 689, 783, 911, 919, 960
SsiI	CCGC	8 cut(s)	94, 448, 471, 725, 1067, 1140, 1164, 1212
SspI	AATATT	1 cut(s)	1006
SspMI	CTAG	1 cut(s)	1283
StyD4I	CCNGG	3 cut(s)	300, 451, 1231
StyI	CCWWGG	2 cut(s)	288, 1269
TaaI	ACNGT	9 cut(s)	34, 89, 259, 341, 503, 522, 545, 666, 790
TaqI	TCGA	8 cut(s)	12, 222, 356, 384, 420, 517, 1186, 1258
TasI	AATT	7 cut(s)	296, 637, 689, 783, 911, 919, 960
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	4 cut(s)	727, 1070, 1143, 1215
TfiI	GAWTC	2 cut(s)	653, 999
Tru1I	TTAA	3 cut(s)	284, 350, 900
Tru9I	TTAA	3 cut(s)	284, 350, 900
TscAI	CASTG	5 cut(s)	508, 634, 671, 712, 820
TseFI	GTSAC	3 cut(s)	790, 862, 1058
TseI	GCWGC	6 cut(s)	318, 529, 532, 567, 766, 1286
Tsp45I	GTSAC	3 cut(s)	790, 862, 1058
TspDTI	ATGAA	3 cut(s)	426, 764, 932
TspGWI	ACGGA	3 cut(s)	514, 630, 860
TspRI	CASTG	5 cut(s)	508, 634, 671, 712, 820
VpaK11BI	GGWCC	1 cut(s)	1079
XagI	CCTNNNNNAGG	1 cut(s)	677
XapI	RAATTY	3 cut(s)	296, 919, 960
XceI	RCATGY	2 cut(s)	408, 766
XcmI	CCANNNNNNNNNTGG	2 cut(s)	308, 874
XmiI	GTMKAC	1 cut(s)	540
XspI	CTAG	1 cut(s)	1283
Zsp2I	ATGCAT	1 cut(s)	764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.