Rh3BG240900

Belongs to the peptidase C1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003327
Physical Location & Seq
Reverse (-)
22718869 .. 22719348
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG240900.1

Sequence Viewer

Length: 480 bp
ATGGCAGGTTATGTCGATAGCAGAAACCAGCTTGCCACAACAATCATTTTGATTCTCTTCTCATCGTCATTGGCCCATGCAAACGACGTCGACGTGGCCGAGATCTTCAACCAGTGGATCGTCCAACATCAGAGGGTGTACTCAACCGAGGTTCACAAACAAAACCGTTTTGAGATATTCAAAGCCAACTGGGAATACGTCGAGAACTTCAAGAAGATCGGCAACAAGACCTATACCTTAGGTCTGAATAAGTTCTCGGACTTAAGCCCGGAAGAATTCCTGAAAACTTATACCTGCGGCAGAGATCCCACTCCCACCAGTACCCACTCAAACTCGACCTCCACATATCCTCATGTCGGAATGGATTATCTTGACTATGAGGCATGCTATGAATCAAGGGACTGGACGGAAGATGGATATGTGAGCCCCCCTGGGGATCAGACTCCGTACTGTGGTAATTACCAAAACCCGAGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04140 ko04142 ko04145 ko04210 ko04612 ko05205 ko05323 ko05418 map04140 map04142 map04145 map04210 map04612 map05205 map05323 map05418
Pfam Domains
Protein Families
Inhibitor_I29 Peptidase_C1

Protein Analysis

159

Amino Acids

18.29

Weight (kDa)

4.97

Isoelectric Point (pI)

34.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Inhibitor_I29 PF08246 36 - 93 2.9e-19 Cathepsin propeptide inhibitor domain (I29)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
Acc36I ACCTGC 1 cut(s) 302
AccI GTMKAC 1 cut(s) 90
AciI CCGC 1 cut(s) 297
AclWI GGATC 3 cut(s) 125, 299, 444
AcoI YGGCCR 1 cut(s) 96
AcsI RAATTY 1 cut(s) 275
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 3 cut(s) 140, 322, 449
AfiI CCNNNNNNNGG 3 cut(s) 356, 433, 452
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 109, 181, 211
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 430
AluBI AGCT 1 cut(s) 31
AluI AGCT 1 cut(s) 31
AlwI GGATC 3 cut(s) 125, 299, 444
Ama87I CYCGRG 1 cut(s) 469
AoxI GGCC 2 cut(s) 72, 96
ApoI RAATTY 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 251
AspS9I GGNCC 1 cut(s) 73
AsuC2I CCSGG 1 cut(s) 269
AvaI CYCGRG 1 cut(s) 469
AxyI CCTNAGG 1 cut(s) 238
BanII GRGCYC 1 cut(s) 428
BccI CCATC 1 cut(s) 407
BciT130I CCWGG 1 cut(s) 432
BcnI CCSGG 1 cut(s) 269
BfrI CTTAAG 1 cut(s) 262
BfuAI ACCTGC 1 cut(s) 302
BglII AGATCT 1 cut(s) 102
BisI GCNGC 1 cut(s) 298
BlsI GCNGC 1 cut(s) 299
Bme1390I CCNGG 2 cut(s) 269, 432
BmeT110I CYCGRG 1 cut(s) 469
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 1 cut(s) 73
BmrFI CCNGG 2 cut(s) 269, 432
BmrI ACTGGG 1 cut(s) 199
BmuI ACTGGG 1 cut(s) 199
BpuMI CCSGG 1 cut(s) 269
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 147, 430, 431
BsaXI ACNNNNNCTCC 2 cut(s) 323, 353
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 433, 452
Bse1I ACTGG 4 cut(s) 112, 194, 318, 407
Bse21I CCTNAGG 1 cut(s) 238
BseBI CCWGG 1 cut(s) 432
BseDI CCNNGG 3 cut(s) 147, 430, 431
BseLI CCNNNNNNNGG 3 cut(s) 356, 433, 452
BseNI ACTGG 4 cut(s) 112, 194, 318, 407
BshFI GGCC 2 cut(s) 74, 98
BsiHKCI CYCGRG 1 cut(s) 469
BsiSI CCGG 1 cut(s) 269
BslFI GGGAC 1 cut(s) 413
BslI CCNNNNNNNGG 3 cut(s) 356, 433, 452
BsmFI GGGAC 1 cut(s) 413
BsnI GGCC 2 cut(s) 74, 98
BsoBI CYCGRG 1 cut(s) 469
Bsp1286I GDGCHC 1 cut(s) 428
Bsp143I GATC 5 cut(s) 102, 117, 216, 304, 436
BspACI CCGC 1 cut(s) 297
BspANI GGCC 2 cut(s) 74, 98
BspMI ACCTGC 1 cut(s) 302
BspPI GGATC 3 cut(s) 125, 299, 444
BspTI CTTAAG 1 cut(s) 262
BsrI ACTGG 4 cut(s) 112, 194, 318, 407
BssECI CCNNGG 3 cut(s) 147, 430, 431
BssMI GATC 5 cut(s) 102, 117, 216, 304, 436
BssNI GRCGYC 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 432
Bst4CI ACNGT 2 cut(s) 167, 452
Bst6I CTCTTC 1 cut(s) 62
BstACI GRCGYC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 262
BstC8I GCNNGC 2 cut(s) 33, 385
BstDEI CTNAG 1 cut(s) 238
BstKTI GATC 5 cut(s) 105, 120, 219, 307, 439
BstMBI GATC 5 cut(s) 102, 117, 216, 304, 436
BstNI CCWGG 1 cut(s) 432
BstNSI RCATGY 1 cut(s) 387
BstSCI CCNGG 2 cut(s) 267, 430
BstX2I RGATCY 2 cut(s) 102, 304
BstYI RGATCY 2 cut(s) 102, 304
Bsu36I CCTNAGG 1 cut(s) 238
BsuRI GGCC 2 cut(s) 74, 98
BtrI CACGTC 1 cut(s) 94
BtsIMutI CAGTG 1 cut(s) 119
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 2 cut(s) 33, 385
Cfr13I GGNCC 1 cut(s) 73
Csp6I GTAC 3 cut(s) 139, 321, 448
CviAII CATG 3 cut(s) 77, 353, 384
CviJI RGCY 7 cut(s) 31, 74, 98, 185, 267, 426, 474
CviKI_1 RGCY 7 cut(s) 31, 74, 98, 185, 267, 426, 474
CviQI GTAC 3 cut(s) 139, 321, 448
DdeI CTNAG 1 cut(s) 238
DpnI GATC 5 cut(s) 104, 119, 218, 306, 438
DpnII GATC 5 cut(s) 102, 117, 216, 304, 436
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 428
Eco81I CCTNAGG 1 cut(s) 238
Eco88I CYCGRG 1 cut(s) 469
EcoRI GAATTC 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 430
EcoT38I GRGCYC 1 cut(s) 428
FaeI CATG 3 cut(s) 80, 356, 387
FaqI GGGAC 1 cut(s) 413
FatI CATG 3 cut(s) 76, 352, 383
FblI GTMKAC 1 cut(s) 90
Fnu4HI GCNGC 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 1 cut(s) 298
GluI GCNGC 1 cut(s) 298
HaeIII GGCC 2 cut(s) 74, 98
HapII CCGG 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 87
Hin1II CATG 3 cut(s) 80, 356, 387
HincII GTYRAC 1 cut(s) 91
HindII GTYRAC 1 cut(s) 91
HinfI GANTC 3 cut(s) 52, 392, 442
HpaII CCGG 1 cut(s) 269
Hpy166II GTNNAC 3 cut(s) 91, 139, 154
Hpy188I TCNGA 5 cut(s) 132, 246, 259, 359, 441
Hpy188III TCNNGA 4 cut(s) 202, 211, 280, 371
Hpy8I GTNNAC 3 cut(s) 91, 139, 154
Hpy99I CGWCG 4 cut(s) 89, 92, 95, 203
HpyCH4III ACNGT 2 cut(s) 167, 452
HpyCH4IV ACGT 3 cut(s) 87, 93, 198
HpyCH4V TGCA 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 3 cut(s) 87, 93, 198
Hsp92I GRCGYC 1 cut(s) 87
Hsp92II CATG 3 cut(s) 80, 356, 387
Kzo9I GATC 5 cut(s) 102, 117, 216, 304, 436
MaeII ACGT 3 cut(s) 87, 93, 198
MalI GATC 5 cut(s) 104, 119, 218, 306, 438
MboI GATC 5 cut(s) 102, 117, 216, 304, 436
MboII GAAGA 5 cut(s) 49, 97, 226, 284, 422
MflI RGATCY 2 cut(s) 102, 304
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 2 cut(s) 275, 457
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 2 cut(s) 148, 337
MnlI CCTC 5 cut(s) 126, 142, 349, 360, 373
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 263
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 2 cut(s) 269, 432
MvaI CCWGG 1 cut(s) 432
NciI CCSGG 1 cut(s) 269
NdeII GATC 5 cut(s) 102, 117, 216, 304, 436
NlaIII CATG 3 cut(s) 80, 356, 387
NmeAIII GCCGAG 1 cut(s) 124
NspI RCATGY 1 cut(s) 387
PaeI GCATGC 1 cut(s) 387
PasI CCCWGGG 1 cut(s) 431
PcsI WCGNNNNNNNCGW 2 cut(s) 90, 96
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 52, 392
PkrI GCNGC 1 cut(s) 299
PleI GAGTC 1 cut(s) 436
PpsI GAGTC 1 cut(s) 436
Psp6I CCWGG 1 cut(s) 430
PspGI CCWGG 1 cut(s) 430
PspPI GGNCC 1 cut(s) 73
PsuI RGATCY 2 cut(s) 102, 304
RsaI GTAC 3 cut(s) 140, 322, 449
RsaNI GTAC 3 cut(s) 139, 321, 448
SalI GTCGAC 1 cut(s) 89
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 1 cut(s) 298
Sau3AI GATC 5 cut(s) 102, 117, 216, 304, 436
Sau96I GGNCC 1 cut(s) 73
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 2 cut(s) 269, 432
SduI GDGCHC 1 cut(s) 428
SgrDI CGTCGACG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 262
SmoI CTYRAG 1 cut(s) 262
SphI GCATGC 1 cut(s) 387
Sse9I AATT 2 cut(s) 275, 457
SsiI CCGC 1 cut(s) 297
StyD4I CCNGG 2 cut(s) 267, 430
TaaI ACNGT 2 cut(s) 167, 452
TaiI ACGT 3 cut(s) 90, 96, 201
TaqI TCGA 4 cut(s) 15, 90, 201, 335
TasI AATT 2 cut(s) 275, 457
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 300
TfiI GAWTC 2 cut(s) 52, 392
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 405
TspGWI ACGGA 2 cut(s) 422, 435
TspRI CASTG 1 cut(s) 119
Vha464I CTTAAG 1 cut(s) 262
XapI RAATTY 1 cut(s) 275
XceI RCATGY 1 cut(s) 387
XmiI GTMKAC 1 cut(s) 90
XmnI GAANNNNTTC 1 cut(s) 251
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.