Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

28057474 .. 28059627

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g26830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1389 bp

ATGTGCAATTTACCAAAGAGTGTACTCAGTGCTATACTACTGGAGGTAAATGCTTTGATTACTCTGGAGAGCTCAACTGTTACCGTCGTGAATGCTGGGATGATGAGAAGGGAGTATACAAATGTGACAAAGCAGGTAAATGCATCGAAATTTTTGTGCATAAATGTAGATGCTTCCCGCACTTACATCACCGTTTGTCTTGCTCTGTCCTGCGGTCCTGCCATACTCCATTGCCGTTTCTCCAGTGGTATTCTTCAGAAAATAGGAAGTATTGGACTTGGAGGTCCAGCACTCCTTGGAGTCCTCGCAGCATCCTTTTTTCTTTTCAGGCGTTACAAAAAAAAGCTCGCTTCTTCAAACGTACCCTCCAGGGACATTTCTTCTCAGCCGTACTCGAAATCAGACCTAGAAGGCGGCAATGCCTACTTTGGTGTTTCGGTCTTCACCTACGAGGAACTTGAAGAAGCCACTAATCATTTTGACTGTGAAAAGGAGCTTGGAGATGGAGGTTTTGGAACTGTCTACTATGGCAAACTGAAAGATGGCAGGGAAGTTGCAGTCAAGCGTTTATATGAGCACAATTGCAAACGTGTGGAACAGTTTATGAATGAAATTGAAATTCTCACTCGTCTGCGCCACAAAAACTTAGTCTCCCTCTATGGTTGCACTTCACGCCGCAGCCGTGAACTCATACTCGTCTATGAATACATTCCCAATGGCACTGTTGCTGATCATCTCCATGGTGACTTAGCAGAACGTGGTTCACTGACATGGCCTATTCGTATGAGCATTGCCATCGAAACTGCCTATGCATTGTCTTACCTCCATGTTTCTGACATTGTGCATCGTGATGTGAAGACTACCAACATTCTCCTTGACAACAACTTTACTGTTAAAGTTGCTGATTTTGGGCTCTCGCGGCTTTTCCCCCTTGATGTCACTCATGTCTCTACTGCTCCACAAGCAGTTGATATAACTAGGCATAGGCATGAGATCAATTTGTCTAACATAGCCATAAACAAGATACAAAGAGGTTTATACAGTGAGCTGGTAGATTCATGTCTTGGTTTTGAGTCAGATCATGAAGTTAAAAGGATGACAATTGCAGTCGCAGAGTTGGCTTTCCAATGTTTGCAGCAGGACAATGATGCAAGGCCTACCATGTCTGAGGTTTTGGAAACGTTGCAGATGATTGAAAGTGGAAAAGATGTTCCACAGAATCCGAAGGTCTTTGATGATGTTGAGATGACAACGAGCATACAGCCACCACCTTCACCAGAATGTGATGAGCTTCAGTTGTTGAAGAACATGAAGCCGCCATGTTCACCGATCTCCGTGACCCAAAACTGGCCTAGCACTAGGTCTACTACACCCAATGCCAGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

463

Amino Acids

51.38

Weight (kDa)

6.2

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	162 - 309	1.8e-36	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	162 - 312	9.7e-34	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	282
Acc36I	ACCTGC	1 cut(s)	124
AccI	GTMKAC	3 cut(s)	116, 522, 1364
AccII	CGCG	1 cut(s)	919
AciI	CCGC	6 cut(s)	178, 213, 414, 676, 919, 1316
AclI	AACGTT	1 cut(s)	1181
AcsI	RAATTY	2 cut(s)	149, 618
AcuI	CTGAAG	2 cut(s)	239, 1277
AfaI	GTAC	3 cut(s)	24, 363, 392
AfiI	CCNNNNNNNGG	1 cut(s)	1347
AflIII	ACRYGT	1 cut(s)	589
AgsI	TTSAA	5 cut(s)	357, 461, 617, 1196, 1303
AjnI	CCWGG	1 cut(s)	368
AjuI	GAANNNNNNNTTGG	2 cut(s)	480, 512
AloI	GAACNNNNNNTCC	2 cut(s)	1194, 1226
AluBI	AGCT	5 cut(s)	72, 346, 496, 1048, 1291
AluI	AGCT	5 cut(s)	72, 346, 496, 1048, 1291
Alw21I	GWGCWC	2 cut(s)	74, 579
Alw26I	GTCTC	2 cut(s)	655, 952
AlwNI	CAGNNNCTG	1 cut(s)	1386
AoxI	GGCC	3 cut(s)	773, 1154, 1349
ApeKI	GCWGC	3 cut(s)	308, 678, 1135
ApoI	RAATTY	2 cut(s)	149, 618
ArsI	GACNNNNNNTTYG	2 cut(s)	633, 665
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	636
AspS9I	GGNCC	2 cut(s)	215, 284
AsuHPI	GGTGA	5 cut(s)	181, 436, 755, 1266, 1317
AvaII	GGWCC	2 cut(s)	215, 284
BanII	GRGCYC	2 cut(s)	74, 915
BarI	GAAGNNNNNNTAC	2 cut(s)	100, 132
BbsI	GAAGAC	2 cut(s)	433, 863
Bbv12I	GWGCWC	2 cut(s)	74, 579
BbvI	GCAGC	3 cut(s)	320, 690, 1147
BccI	CCATC	3 cut(s)	497, 536, 803
BceAI	ACGGC	3 cut(s)	219, 373, 666
BcgI	CGANNNNNNTGC	2 cut(s)	778, 812
BciT130I	CCWGG	1 cut(s)	370
BclI	TGATCA	1 cut(s)	730
BcoDI	GTCTC	2 cut(s)	655, 952
BfaI	CTAG	4 cut(s)	407, 978, 1353, 1359
BfuAI	ACCTGC	1 cut(s)	124
BisI	GCNGC	7 cut(s)	309, 415, 676, 679, 920, 1136, 1316
BlsI	GCNGC	7 cut(s)	310, 416, 677, 680, 921, 1137, 1317
Bme1390I	CCNGG	1 cut(s)	370
Bme18I	GGWCC	2 cut(s)	215, 284
BmgT120I	GGNCC	2 cut(s)	215, 284
BmrFI	CCNGG	1 cut(s)	370
BmsI	GCATC	5 cut(s)	152, 160, 320, 853, 1138
BpiI	GAAGAC	2 cut(s)	433, 863
BpmI	CTGGAG	4 cut(s)	62, 86, 226, 352
BsaJI	CCNNGG	3 cut(s)	295, 369, 739
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 635, 665
Bsc4I	CCNNNNNNNGG	1 cut(s)	1347
Bse1I	ACTGG	4 cut(s)	45, 243, 1352, 1380
Bse3DI	GCAATG	3 cut(s)	229, 424, 789
BseBI	CCWGG	1 cut(s)	370
BseDI	CCNNGG	3 cut(s)	295, 369, 739
BseGI	GGATG	3 cut(s)	105, 311, 1101
BseLI	CCNNNNNNNGG	1 cut(s)	1347
BseMI	GCAATG	3 cut(s)	229, 424, 789
BseMII	CTCAG	3 cut(s)	40, 398, 1158
BseNI	ACTGG	4 cut(s)	45, 243, 1352, 1380
BseXI	GCAGC	3 cut(s)	320, 690, 1147
BseYI	CCCAGC	1 cut(s)	95
Bsh1236I	CGCG	1 cut(s)	919
BshFI	GGCC	3 cut(s)	775, 1156, 1351
BsiHKAI	GWGCWC	2 cut(s)	74, 579
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	1347
BsmAI	GTCTC	2 cut(s)	655, 952
BsmFI	GGGAC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	3 cut(s)	775, 1156, 1351
Bsp1286I	GDGCHC	3 cut(s)	74, 579, 915
Bsp143I	GATC	4 cut(s)	730, 993, 1078, 1329
Bsp19I	CCATGG	1 cut(s)	739
BspACI	CCGC	6 cut(s)	178, 213, 414, 676, 919, 1316
BspANI	GGCC	3 cut(s)	775, 1156, 1351
BspCNI	CTCAG	3 cut(s)	39, 397, 1159
BspFNI	CGCG	1 cut(s)	919
BspHI	TCATGA	1 cut(s)	1081
BspMI	ACCTGC	1 cut(s)	124
BsrDI	GCAATG	3 cut(s)	229, 424, 789
BsrI	ACTGG	4 cut(s)	45, 243, 1352, 1380
BssECI	CCNNGG	3 cut(s)	295, 369, 739
BssMI	GATC	4 cut(s)	730, 993, 1078, 1329
BssNAI	GTATAC	1 cut(s)	117
BssT1I	CCWWGG	2 cut(s)	295, 739
Bst1107I	GTATAC	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	370
Bst4CI	ACNGT	9 cut(s)	79, 85, 193, 485, 520, 600, 724, 892, 1043
BstC8I	GCNNGC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	26, 384, 646, 748, 1167
BstDSI	CCRYGG	1 cut(s)	739
BstF5I	GGATG	3 cut(s)	105, 311, 1101
BstFNI	CGCG	1 cut(s)	919
BstHHI	GCGC	1 cut(s)	636
BstKTI	GATC	4 cut(s)	733, 996, 1081, 1332
BstMAI	GTCTC	2 cut(s)	655, 952
BstMBI	GATC	4 cut(s)	730, 993, 1078, 1329
BstMWI	GCNNNNNNNGC	4 cut(s)	672, 919, 962, 1118
BstNI	CCWGG	1 cut(s)	370
BstSCI	CCNGG	1 cut(s)	368
BstUI	CGCG	1 cut(s)	919
BstV1I	GCAGC	3 cut(s)	320, 690, 1147
BstV2I	GAAGAC	2 cut(s)	433, 863
BstZ17I	GTATAC	1 cut(s)	117
BsuRI	GGCC	3 cut(s)	775, 1156, 1351
BtgI	CCRYGG	1 cut(s)	739
BtsCI	GGATG	3 cut(s)	105, 311, 1101
BtsIMutI	CAGTG	5 cut(s)	34, 250, 720, 764, 1048
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	1 cut(s)	348
CaiI	CAGNNNCTG	1 cut(s)	1386
CciI	TCATGA	1 cut(s)	1081
CfoI	GCGC	1 cut(s)	636
Cfr13I	GGNCC	2 cut(s)	215, 284
Csp6I	GTAC	3 cut(s)	23, 362, 391
CviQI	GTAC	3 cut(s)	23, 362, 391
DdeI	CTNAG	5 cut(s)	26, 384, 646, 748, 1167
DpnI	GATC	4 cut(s)	732, 995, 1080, 1331
DpnII	GATC	4 cut(s)	730, 993, 1078, 1329
DrdI	GACNNNNNNGTC	1 cut(s)	282
DseDI	GACNNNNNNGTC	1 cut(s)	282
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	2 cut(s)	295, 739
Eco147I	AGGCCT	1 cut(s)	1156
Eco24I	GRGCYC	2 cut(s)	74, 915
Eco47I	GGWCC	2 cut(s)	215, 284
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	239, 1277
EcoICRI	GAGCTC	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	368
EcoT14I	CCWWGG	2 cut(s)	295, 739
EcoT22I	ATGCAT	2 cut(s)	145, 814
EcoT38I	GRGCYC	2 cut(s)	74, 915
ErhI	CCWWGG	2 cut(s)	295, 739
FaqI	GGGAC	1 cut(s)	386
FauI	CCCGC	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	730
FblI	GTMKAC	3 cut(s)	116, 522, 1364
Fnu4HI	GCNGC	7 cut(s)	309, 415, 676, 679, 920, 1136, 1316
FokI	GGATG	3 cut(s)	112, 298, 1108
FriOI	GRGCYC	2 cut(s)	74, 915
Fsp4HI	GCNGC	7 cut(s)	309, 415, 676, 679, 920, 1136, 1316
FspBI	CTAG	4 cut(s)	407, 978, 1353, 1359
GlaI	GCGC	1 cut(s)	635
GluI	GCNGC	7 cut(s)	309, 415, 676, 679, 920, 1136, 1316
GsaI	CCCAGC	1 cut(s)	99
GsuI	CTGGAG	4 cut(s)	62, 86, 226, 352
HaeIII	GGCC	3 cut(s)	775, 1156, 1351
HhaI	GCGC	1 cut(s)	636
Hin6I	GCGC	1 cut(s)	634
HinP1I	GCGC	1 cut(s)	634
HinfI	GANTC	4 cut(s)	300, 1055, 1073, 1219
HphI	GGTGA	5 cut(s)	181, 436, 755, 1266, 1317
Hpy166II	GTNNAC	7 cut(s)	23, 117, 523, 686, 764, 1325, 1365
Hpy188I	TCNGA	6 cut(s)	258, 403, 835, 1078, 1168, 1224
Hpy188III	TCNNGA	4 cut(s)	65, 88, 848, 1082
Hpy8I	GTNNAC	7 cut(s)	23, 117, 523, 686, 764, 1325, 1365
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	4 cut(s)	102, 404, 1219, 1281
HpyCH4III	ACNGT	9 cut(s)	79, 85, 193, 485, 520, 600, 724, 892, 1043
HpyCH4IV	ACGT	4 cut(s)	360, 589, 757, 1181
HpyF10VI	GCNNNNNNNGC	4 cut(s)	672, 919, 962, 1118
HpyF3I	CTNAG	5 cut(s)	26, 384, 646, 748, 1167
HpySE526I	ACGT	4 cut(s)	360, 589, 757, 1181
HspAI	GCGC	1 cut(s)	634
Ksp22I	TGATCA	1 cut(s)	730
Kzo9I	GATC	4 cut(s)	730, 993, 1078, 1329
LmnI	GCTCC	2 cut(s)	493, 961
Lsp1109I	GCAGC	3 cut(s)	320, 690, 1147
LweI	GCATC	5 cut(s)	152, 160, 320, 853, 1138
MaeI	CTAG	4 cut(s)	407, 978, 1353, 1359
MaeII	ACGT	4 cut(s)	360, 589, 757, 1181
MaeIII	GTNAC	6 cut(s)	79, 124, 332, 743, 937, 1336
MalI	GATC	4 cut(s)	732, 995, 1080, 1331
MboI	GATC	4 cut(s)	730, 993, 1078, 1329
MboII	GAAGA	7 cut(s)	245, 345, 372, 433, 473, 868, 1315
MfeI	CAATTG	2 cut(s)	580, 1101
MhlI	GDGCHC	3 cut(s)	74, 579, 915
MluCI	AATT	7 cut(s)	7, 149, 580, 612, 618, 997, 1101
MlyI	GAGTC	2 cut(s)	309, 1082
Mph1103I	ATGCAT	2 cut(s)	145, 814
MroXI	GAANNNNTTC	1 cut(s)	708
MseI	TTAA	2 cut(s)	894, 1089
MslI	CAYNNNNRTG	5 cut(s)	738, 769, 849, 987, 1279
MspR9I	CCNGG	1 cut(s)	370
MunI	CAATTG	2 cut(s)	580, 1101
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	370
MvnI	CGCG	1 cut(s)	919
MwoI	GCNNNNNNNGC	4 cut(s)	672, 919, 962, 1118
NcoI	CCATGG	1 cut(s)	739
NdeII	GATC	4 cut(s)	730, 993, 1078, 1329
NmuCI	GTSAC	4 cut(s)	124, 743, 937, 1336
NsiI	ATGCAT	2 cut(s)	145, 814
PagI	TCATGA	1 cut(s)	1081
PceI	AGGCCT	1 cut(s)	1156
PcsI	WCGNNNNNNNCGW	1 cut(s)	679
PctI	GAATGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	2 cut(s)	1055, 1219
PkrI	GCNGC	7 cut(s)	310, 416, 677, 680, 921, 1137, 1317
PleI	GAGTC	2 cut(s)	308, 1081
PpsI	GAGTC	2 cut(s)	308, 1081
Psp124BI	GAGCTC	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	1181
Psp6I	CCWGG	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	368
PspPI	GGNCC	2 cut(s)	215, 284
PstNI	CAGNNNCTG	1 cut(s)	1386
RsaI	GTAC	3 cut(s)	24, 363, 392
RsaNI	GTAC	3 cut(s)	23, 362, 391
RseI	CAYNNNNRTG	5 cut(s)	738, 769, 849, 987, 1279
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	894, 1089
SatI	GCNGC	7 cut(s)	309, 415, 676, 679, 920, 1136, 1316
Sau3AI	GATC	4 cut(s)	730, 993, 1078, 1329
Sau96I	GGNCC	2 cut(s)	215, 284
SchI	GAGTC	2 cut(s)	309, 1082
ScrFI	CCNGG	1 cut(s)	370
SduI	GDGCHC	3 cut(s)	74, 579, 915
SfaNI	GCATC	5 cut(s)	152, 160, 320, 853, 1138
SinI	GGWCC	2 cut(s)	215, 284
SmiMI	CAYNNNNRTG	5 cut(s)	738, 769, 849, 987, 1279
Sse9I	AATT	7 cut(s)	7, 149, 580, 612, 618, 997, 1101
SseBI	AGGCCT	1 cut(s)	1156
SsiI	CCGC	6 cut(s)	178, 213, 414, 676, 919, 1316
SspMI	CTAG	4 cut(s)	407, 978, 1353, 1359
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	1156
StyD4I	CCNGG	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	295, 739
TaaI	ACNGT	9 cut(s)	79, 85, 193, 485, 520, 600, 724, 892, 1043
TaiI	ACGT	4 cut(s)	363, 592, 760, 1184
TaqI	TCGA	3 cut(s)	146, 395, 798
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	7 cut(s)	7, 149, 580, 612, 618, 997, 1101
TatI	WGTACW	1 cut(s)	22
TauI	GCSGC	4 cut(s)	417, 678, 922, 1318
TfiI	GAWTC	2 cut(s)	1055, 1219
Tru1I	TTAA	2 cut(s)	894, 1089
Tru9I	TTAA	2 cut(s)	894, 1089
TscAI	CASTG	5 cut(s)	34, 250, 727, 771, 1048
TseFI	GTSAC	4 cut(s)	124, 743, 937, 1336
TseI	GCWGC	3 cut(s)	308, 678, 1135
Tsp45I	GTSAC	4 cut(s)	124, 743, 937, 1336
TspDTI	ATGAA	6 cut(s)	620, 624, 717, 1047, 1098, 1325
TspGWI	ACGGA	1 cut(s)	1324
TspRI	CASTG	5 cut(s)	34, 250, 727, 771, 1048
VpaK11BI	GGWCC	2 cut(s)	215, 284
XapI	RAATTY	2 cut(s)	149, 618
XmiI	GTMKAC	3 cut(s)	116, 522, 1364
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	4 cut(s)	407, 978, 1353, 1359
Zsp2I	ATGCAT	2 cut(s)	145, 814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.