Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005783.1

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Reverse (-)

57855 .. 59736

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005783.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgaggttggcgtcgccgttttctgcgattgagagtttcgagtcagagtttgggactgagtcgactcggagacgagcgatgagtgagtcgaggaagaggaagagcgcgaggccgagagtggtgctgcttcggaatttgaggaatgaaatgccattggtggagatgaggaggaccatgaaggtttttgggatagggaagggggtggacaatgcccgagtcttatgttcgggccaccacctctggctggaatctcgcgttttgattttcagccgtgaactcctccttgtgtacgaatatgttgataatggcactatggctaatcatctccgtggaaacctagcaggctgtggtttactcacatggcctattcgtatgagcattgccatagaaactgccaatgcactgtcttacctccatgctagtgatgttgtgcatcgtgatgtcaagacttccaacattcttctcagtagaaatttctgtgttaaagttgcagattttgggctctcccggctttttcagattgatgttagccatgtctcaactggcccgcaaggcacccttggttatgttgatctagcttatcaggaaacctgcaagctaactagtatgagtgatgtgtatagttttggggttgttctgattgaactaatatcatctatgcgagcattcgatatgaggaagcaggcagaggatattgatttggctgacctagcaagaaacaagatgcaaaatggttatttgaagcaggacaacaatatgaggcctaccatgctcgaggtttcagaggctttagagaggattgagatcactaccaacattctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

274

Amino Acids

31.03

Weight (kDa)

8.9

Isoelectric Point (pI)

49.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	554
AccI	GTMKAC	1 cut(s)	62
AccII	CGCG	2 cut(s)	107, 255
AciI	CCGC	1 cut(s)	548
AcsI	RAATTY	2 cut(s)	133, 472
AcyI	GRCGYC	1 cut(s)	11
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	2 cut(s)	644, 742
AhlI	ACTAGT	1 cut(s)	602
AluBI	AGCT	2 cut(s)	578, 598
AluI	AGCT	2 cut(s)	578, 598
Alw26I	GTCTC	2 cut(s)	64, 541
Ama87I	CYCGRG	2 cut(s)	213, 773
AoxI	GGCC	5 cut(s)	110, 229, 362, 544, 761
ApeKI	GCWGC	1 cut(s)	124
ApoI	RAATTY	2 cut(s)	133, 472
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	3 cut(s)	171, 229, 545
AsuC2I	CCSGG	1 cut(s)	508
AvaI	CYCGRG	2 cut(s)	213, 773
AvaII	GGWCC	1 cut(s)	171
BanI	GGYRCC	1 cut(s)	554
BanII	GRGCYC	1 cut(s)	504
BbvI	GCAGC	1 cut(s)	111
BceAI	ACGGC	1 cut(s)	255
BcgI	CGANNNNNNTGC	2 cut(s)	103, 137
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	2 cut(s)	64, 541
BcuI	ACTAGT	1 cut(s)	602
BfaI	CTAG	5 cut(s)	338, 420, 575, 603, 710
BfmI	CTRYAG	1 cut(s)	821
BfuAI	ACCTGC	1 cut(s)	599
BglI	GCCNNNNNGGC	1 cut(s)	552
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	2 cut(s)	213, 773
BmgT120I	GGNCC	3 cut(s)	171, 229, 545
BmiI	GGNNCC	1 cut(s)	556
BmrFI	CCNGG	1 cut(s)	508
BmsI	GCATC	2 cut(s)	442, 714
BpuMI	CCSGG	1 cut(s)	508
BsaBI	GATNNNNATC	1 cut(s)	803
BsaHI	GRCGYC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	328, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	803
BseDI	CCNNGG	2 cut(s)	328, 559
BseJI	GATNNNNATC	1 cut(s)	803
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	48, 478
BseNI	ACTGG	1 cut(s)	547
BseRI	GAGGAG	2 cut(s)	181, 269
BseXI	GCAGC	1 cut(s)	111
Bsh1236I	CGCG	2 cut(s)	107, 255
BshFI	GGCC	5 cut(s)	112, 231, 364, 546, 763
BshNI	GGYRCC	1 cut(s)	554
BsiHKCI	CYCGRG	2 cut(s)	213, 773
BsiSI	CCGG	1 cut(s)	508
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	2 cut(s)	64, 541
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	665
BsnI	GGCC	5 cut(s)	112, 231, 364, 546, 763
BsoBI	CYCGRG	2 cut(s)	213, 773
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp143I	GATC	2 cut(s)	571, 804
BspACI	CCGC	1 cut(s)	548
BspANI	GGCC	5 cut(s)	112, 231, 364, 546, 763
BspCNI	CTCAG	2 cut(s)	49, 477
BspFNI	CGCG	2 cut(s)	107, 255
BspLI	GGNNCC	1 cut(s)	556
BspMI	ACCTGC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	95
BspT107I	GGYRCC	1 cut(s)	554
BsrDI	GCAATG	1 cut(s)	378
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	2 cut(s)	328, 559
BssMI	GATC	2 cut(s)	571, 804
BssNI	GRCGYC	1 cut(s)	11
BssT1I	CCWWGG	1 cut(s)	559
Bst4CI	ACNGT	1 cut(s)	405
Bst6I	CTCTTC	2 cut(s)	89, 95
BstACI	GRCGYC	1 cut(s)	11
BstC8I	GCNNGC	5 cut(s)	343, 548, 596, 663, 684
BstDEI	CTNAG	2 cut(s)	57, 464
BstDSI	CCRYGG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	107, 255
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	2 cut(s)	574, 807
BstMAI	GTCTC	2 cut(s)	64, 541
BstMBI	GATC	2 cut(s)	571, 804
BstMWI	GCNNNNNNNGC	4 cut(s)	508, 552, 710, 769
BstSCI	CCNGG	1 cut(s)	506
BstSFI	CTRYAG	1 cut(s)	821
BstUI	CGCG	2 cut(s)	107, 255
BstV1I	GCAGC	1 cut(s)	111
BsuRI	GGCC	5 cut(s)	112, 231, 364, 546, 763
BtgI	CCRYGG	1 cut(s)	328
BtgZI	GCGATG	1 cut(s)	92
BtsIMutI	CAGTG	1 cut(s)	401
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	5 cut(s)	343, 548, 596, 663, 684
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	3 cut(s)	171, 229, 545
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	5 cut(s)	175, 360, 416, 533, 769
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	57, 464
DpnI	GATC	2 cut(s)	573, 806
DpnII	GATC	2 cut(s)	571, 804
Eam1104I	CTCTTC	2 cut(s)	89, 95
EarI	CTCTTC	2 cut(s)	89, 95
Eco130I	CCWWGG	1 cut(s)	559
Eco147I	AGGCCT	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	504
Eco47I	GGWCC	1 cut(s)	171
Eco88I	CYCGRG	2 cut(s)	213, 773
EcoT14I	CCWWGG	1 cut(s)	559
EcoT38I	GRGCYC	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	5 cut(s)	178, 363, 419, 536, 772
FalI	AAGNNNNNCTT	2 cut(s)	543, 575
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	5 cut(s)	174, 359, 415, 532, 768
FauI	CCCGC	1 cut(s)	555
FblI	GTMKAC	1 cut(s)	62
Fnu4HI	GCNGC	1 cut(s)	125
FriOI	GRGCYC	1 cut(s)	504
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	5 cut(s)	338, 420, 575, 603, 710
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	5 cut(s)	112, 231, 364, 546, 763
HapII	CCGG	1 cut(s)	508
HhaI	GCGC	1 cut(s)	107
Hin1I	GRCGYC	1 cut(s)	11
Hin1II	CATG	5 cut(s)	178, 363, 419, 536, 772
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	63
HindII	GTYRAC	1 cut(s)	63
HinfI	GANTC	6 cut(s)	41, 59, 64, 86, 216, 248
HpaII	CCGG	1 cut(s)	508
Hpy166II	GTNNAC	5 cut(s)	63, 205, 275, 289, 353
Hpy188I	TCNGA	6 cut(s)	46, 69, 132, 519, 639, 784
Hpy188III	TCNNGA	3 cut(s)	437, 445, 584
Hpy8I	GTNNAC	5 cut(s)	63, 205, 275, 289, 353
Hpy99I	CGWCG	1 cut(s)	16
HpyAV	CCTTC	2 cut(s)	172, 190
HpyCH4III	ACNGT	1 cut(s)	405
HpyCH4V	TGCA	5 cut(s)	401, 433, 491, 594, 727
HpyF10VI	GCNNNNNNNGC	4 cut(s)	508, 552, 710, 769
HpyF3I	CTNAG	2 cut(s)	57, 464
Hsp92I	GRCGYC	1 cut(s)	11
Hsp92II	CATG	5 cut(s)	178, 363, 419, 536, 772
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	571, 804
LguI	GCTCTTC	1 cut(s)	95
LpnPI	CCDG	9 cut(s)	226, 230, 327, 521, 528, 569, 604, 668, 731
Lsp1109I	GCAGC	1 cut(s)	111
LweI	GCATC	2 cut(s)	442, 714
MaeI	CTAG	5 cut(s)	338, 420, 575, 603, 710
MalI	GATC	2 cut(s)	573, 806
MboI	GATC	2 cut(s)	571, 804
MboII	GAAGA	3 cut(s)	106, 112, 452
MhlI	GDGCHC	1 cut(s)	504
MluCI	AATT	2 cut(s)	133, 472
MlyI	GAGTC	5 cut(s)	50, 58, 68, 95, 225
MmeI	TCCRAC	1 cut(s)	477
MseI	TTAA	1 cut(s)	483
MslI	CAYNNNNRTG	3 cut(s)	327, 420, 438
MspI	CCGG	1 cut(s)	508
MspR9I	CCNGG	1 cut(s)	508
Mva1269I	GAATGC	1 cut(s)	665
MvnI	CGCG	2 cut(s)	107, 255
MwoI	GCNNNNNNNGC	4 cut(s)	508, 552, 710, 769
NciI	CCSGG	1 cut(s)	508
NdeII	GATC	2 cut(s)	571, 804
NlaIII	CATG	5 cut(s)	178, 363, 419, 536, 772
NlaIV	GGNNCC	1 cut(s)	556
NmeAIII	GCCGAG	1 cut(s)	138
PaeR7I	CTCGAG	1 cut(s)	773
PceI	AGGCCT	1 cut(s)	763
PciSI	GCTCTTC	1 cut(s)	95
PctI	GAATGC	1 cut(s)	665
PfeI	GAWTC	1 cut(s)	248
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	5 cut(s)	49, 58, 67, 94, 224
PpsI	GAGTC	5 cut(s)	49, 58, 67, 94, 224
PspN4I	GGNNCC	1 cut(s)	556
PspPI	GGNCC	3 cut(s)	171, 229, 545
PspXI	VCTCGAGB	1 cut(s)	773
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	3 cut(s)	327, 420, 438
SalI	GTCGAC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	483
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	2 cut(s)	571, 804
Sau96I	GGNCC	3 cut(s)	171, 229, 545
SchI	GAGTC	5 cut(s)	50, 58, 68, 95, 225
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	2 cut(s)	442, 714
SfcI	CTRYAG	1 cut(s)	821
Sfr274I	CTCGAG	1 cut(s)	773
SinI	GGWCC	1 cut(s)	171
SlaI	CTCGAG	1 cut(s)	773
SmiMI	CAYNNNNRTG	3 cut(s)	327, 420, 438
SmlI	CTYRAG	1 cut(s)	773
SmoI	CTYRAG	1 cut(s)	773
SpeI	ACTAGT	1 cut(s)	602
Sse9I	AATT	2 cut(s)	133, 472
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	1 cut(s)	548
SspMI	CTAG	5 cut(s)	338, 420, 575, 603, 710
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	559
TaaI	ACNGT	1 cut(s)	405
TaqI	TCGA	5 cut(s)	39, 62, 89, 669, 774
TasI	AATT	2 cut(s)	133, 472
TfiI	GAWTC	1 cut(s)	248
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	1 cut(s)	408
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	2 cut(s)	159, 191
TspGWI	ACGGA	1 cut(s)	317
TspRI	CASTG	1 cut(s)	408
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	2 cut(s)	133, 472
XcmI	CCANNNNNNNNNTGG	1 cut(s)	539
XhoI	CTCGAG	1 cut(s)	773
XmiI	GTMKAC	1 cut(s)	62
XspI	CTAG	5 cut(s)	338, 420, 575, 603, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.