Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

64253457 .. 64255128

Gene Structure 1672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG333000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTGTTTACTCGGCTGAGAGTTGTCCACCCTCCTTCTGTAATGAGAGAGTGGGTCATATCTTCTTCCCCTTTAAAAGCATAACAGAGAGTCGTCCTGAATGCGGATTGTTCACTGTCAACTGTTCTGACCGCCTTAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATGATTCCATTAATTTCCGTTTTTATCAATGACACGCGGCTTCAGGAGCGCATAGATATGCGCTTAAAAGGAGATAGCTGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTTCTCCCATCCTCCATACATCCACAACCAACCTTACCCTGTTCAGATGCAACAAGACCCAGGAGAAACCTCCTTACCACAAGGATCCTAACTATGCTTGCACGAGTGTAAATTATATTTACTATACTGTATCAAATGATAGTTTAAATTGCTCAACCATTCAGATTCCCATACTTCCACCATCTCCTTCCAATGAATATAATCCTTCTGCATTGACTGCTGAATTCCCCCTTCAAGTGTATTTTACCGAAGAATGTGATCAGTGTGCTCATAAAGGAGGTAGCTGCTTGGATGTCAATGGAGAATTTAAATGTGGCCCCCATCATAAATATAAATGCCGGTTTGAGAAGGGACAATTCAAATGTACCAAAGCAGGAAATCATCATTTGGGTTTGAAGCTAGGACTCGGTATTGGAGGTGCAGCACTACTTGGACTCCTTGCAGCATGCTTGTTTCTTTTCAGGCGTTACAAAAAAAAGCTCTCTTCTTCAAACGTGCTCTCCAGGAACATTTCTTCTCAGCCCTACTCAAAATCAGACCTAGAAGGGGGCAATGCCTACTTTGGTGTTTCGGTCTTAACCTACGAGGAACTTGAAGAAGCCACTAATCATTTTGACAGTGAAAAAGAGCTTGGAGATGGAGGTTTTGGAACTGTCTACTATGGTAAGAGAACATTCTGTGTTTGTCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

348

Amino Acids

38.84

Weight (kDa)

6.37

Isoelectric Point (pI)

50.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1008
AccII	CGCG	1 cut(s)	271
AciI	CCGC	3 cut(s)	150, 178, 271
AclWI	GGATC	3 cut(s)	187, 431, 444
AcsI	RAATTY	2 cut(s)	575, 656
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	2 cut(s)	149, 898
AgsI	TTSAA	7 cut(s)	224, 331, 587, 712, 748, 843, 947
AjnI	CCWGG	3 cut(s)	346, 411, 854
AjuI	GAANNNNNNNTTGG	2 cut(s)	966, 998
AluBI	AGCT	5 cut(s)	312, 636, 751, 832, 982
AluI	AGCT	5 cut(s)	312, 636, 751, 832, 982
Alw21I	GWGCWC	2 cut(s)	622, 852
AlwI	GGATC	3 cut(s)	187, 431, 444
AoxI	GGCC	2 cut(s)	349, 667
ApeKI	GCWGC	3 cut(s)	636, 773, 794
ApoI	RAATTY	2 cut(s)	575, 656
AseI	ATTAAT	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	285, 297
AspS9I	GGNCC	2 cut(s)	350, 668
BamHI	GGATCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	25, 335
Bbv12I	GWGCWC	2 cut(s)	622, 852
BbvI	GCAGC	3 cut(s)	623, 785, 806
BccI	CCATC	5 cut(s)	200, 368, 541, 681, 983
BciT130I	CCWGG	3 cut(s)	348, 413, 856
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	610
BfaI	CTAG	2 cut(s)	752, 893
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	4 cut(s)	272, 637, 774, 795
BlsI	GCNGC	4 cut(s)	273, 638, 775, 796
Bme1390I	CCNGG	3 cut(s)	348, 413, 856
BmgT120I	GGNCC	2 cut(s)	350, 668
BmiI	GGNNCC	2 cut(s)	438, 670
BmrFI	CCNGG	3 cut(s)	348, 413, 856
BmsI	GCATC	1 cut(s)	389
BpiI	GAAGAC	2 cut(s)	25, 335
BpmI	CTGGAG	1 cut(s)	838
BsaJI	CCNNGG	2 cut(s)	9, 411
BsaXI	ACNNNNNCTCC	4 cut(s)	771, 801, 836, 866
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 898
Bse118I	RCCGGY	1 cut(s)	690
Bse1I	ACTGG	1 cut(s)	221
Bse3DI	GCAATG	1 cut(s)	910
BseBI	CCWGG	3 cut(s)	348, 413, 856
BseDI	CCNNGG	2 cut(s)	9, 411
BseGI	GGATG	3 cut(s)	360, 371, 649
BseLI	CCNNNNNNNGG	2 cut(s)	149, 898
BseMI	GCAATG	1 cut(s)	910
BseMII	CTCAG	2 cut(s)	54, 884
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	623, 785, 806
BsgI	GTGCAG	1 cut(s)	792
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	351, 669
BsiHKAI	GWGCWC	2 cut(s)	622, 852
BsiSI	CCGG	1 cut(s)	691
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	2 cut(s)	149, 898
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	351, 669
Bsp1286I	GDGCHC	2 cut(s)	622, 852
Bsp143I	GATC	3 cut(s)	192, 436, 610
BspACI	CCGC	3 cut(s)	150, 178, 271
BspANI	GGCC	2 cut(s)	351, 669
BspCNI	CTCAG	2 cut(s)	55, 883
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	438, 670
BspPI	GGATC	3 cut(s)	187, 431, 444
BsrDI	GCAATG	1 cut(s)	910
BsrFI	RCCGGY	1 cut(s)	690
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	2 cut(s)	9, 411
BssMI	GATC	3 cut(s)	192, 436, 610
BssSI	CACGAG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	454
Bst2UI	CCWGG	3 cut(s)	348, 413, 856
Bst4CI	ACNGT	6 cut(s)	10, 163, 170, 481, 971, 1006
Bst6I	CTCTTC	1 cut(s)	841
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	451, 799
BstDEI	CTNAG	2 cut(s)	63, 870
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	360, 371, 649
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	285, 297
BstKTI	GATC	3 cut(s)	195, 439, 613
BstMBI	GATC	3 cut(s)	192, 436, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
BstNI	CCWGG	3 cut(s)	348, 413, 856
BstNSI	RCATGY	1 cut(s)	801
BstSCI	CCNGG	3 cut(s)	346, 411, 854
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	3 cut(s)	623, 785, 806
BstV2I	GAAGAC	2 cut(s)	25, 335
BstX2I	RGATCY	2 cut(s)	192, 436
BstYI	RGATCY	2 cut(s)	192, 436
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	351, 669
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	360, 371, 649
BtsIMutI	CAGTG	3 cut(s)	159, 620, 976
Cac8I	GCNNGC	2 cut(s)	451, 799
CfoI	GCGC	2 cut(s)	285, 297
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	2 cut(s)	350, 668
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	2 cut(s)	235, 798
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	63, 870
DpnI	GATC	3 cut(s)	194, 438, 612
DpnII	GATC	3 cut(s)	192, 436, 610
DraI	TTTAAA	3 cut(s)	121, 498, 661
Eam1104I	CTCTTC	1 cut(s)	841
EarI	CTCTTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	3 cut(s)	346, 411, 854
FaeI	CATG	2 cut(s)	238, 801
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	2 cut(s)	234, 797
FbaI	TGATCA	1 cut(s)	610
FblI	GTMKAC	1 cut(s)	1008
Fnu4HI	GCNGC	4 cut(s)	272, 637, 774, 795
FokI	GGATG	3 cut(s)	347, 358, 656
Fsp4HI	GCNGC	4 cut(s)	272, 637, 774, 795
FspBI	CTAG	2 cut(s)	752, 893
GlaI	GCGC	2 cut(s)	284, 296
GluI	GCNGC	4 cut(s)	272, 637, 774, 795
GsuI	CTGGAG	1 cut(s)	838
HaeIII	GGCC	2 cut(s)	351, 669
HapII	CCGG	1 cut(s)	691
HhaI	GCGC	2 cut(s)	285, 297
Hin1II	CATG	2 cut(s)	238, 801
Hin6I	GCGC	2 cut(s)	283, 295
HinP1I	GCGC	2 cut(s)	283, 295
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	5 cut(s)	136, 238, 517, 756, 786
HpaII	CCGG	1 cut(s)	691
Hpy166II	GTNNAC	5 cut(s)	55, 74, 159, 166, 1009
Hpy188I	TCNGA	5 cut(s)	175, 189, 398, 516, 889
Hpy188III	TCNNGA	2 cut(s)	143, 278
Hpy8I	GTNNAC	5 cut(s)	55, 74, 159, 166, 1009
HpyAV	CCTTC	7 cut(s)	91, 363, 549, 567, 593, 694, 890
HpyCH4III	ACNGT	6 cut(s)	10, 163, 170, 481, 971, 1006
HpyCH4IV	ACGT	1 cut(s)	846
HpyCH4V	TGCA	5 cut(s)	402, 453, 563, 773, 794
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
HpyF3I	CTNAG	2 cut(s)	63, 870
HpySE526I	ACGT	1 cut(s)	846
Hsp92II	CATG	2 cut(s)	238, 801
HspAI	GCGC	2 cut(s)	283, 295
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	192, 436, 610
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	3 cut(s)	623, 785, 806
LweI	GCATC	1 cut(s)	389
MaeI	CTAG	2 cut(s)	752, 893
MaeII	ACGT	1 cut(s)	846
MaeIII	GTNAC	1 cut(s)	818
MalI	GATC	3 cut(s)	194, 438, 612
MboI	GATC	3 cut(s)	192, 436, 610
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	2 cut(s)	192, 436
MhlI	GDGCHC	2 cut(s)	622, 852
MluCI	AATT	7 cut(s)	224, 246, 463, 499, 575, 656, 707
MlyI	GAGTC	3 cut(s)	145, 750, 780
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	8 cut(s)	88, 203, 374, 432, 623, 761, 931, 986
MseI	TTAA	8 cut(s)	120, 183, 245, 299, 338, 497, 660, 929
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	1 cut(s)	691
MspR9I	CCNGG	3 cut(s)	348, 413, 856
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	3 cut(s)	348, 413, 856
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
NdeII	GATC	3 cut(s)	192, 436, 610
NlaIII	CATG	2 cut(s)	238, 801
NlaIV	GGNNCC	2 cut(s)	438, 670
NmeAIII	GCCGAG	1 cut(s)	38
NspI	RCATGY	1 cut(s)	801
PaeI	GCATGC	1 cut(s)	801
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	238, 517
PfoI	TCCNGGA	1 cut(s)	854
PkrI	GCNGC	4 cut(s)	273, 638, 775, 796
PleI	GAGTC	3 cut(s)	144, 750, 780
PpsI	GAGTC	3 cut(s)	144, 750, 780
PshBI	ATTAAT	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	346, 411, 854
PspGI	CCWGG	3 cut(s)	346, 411, 854
PspN4I	GGNNCC	2 cut(s)	438, 670
PspPI	GGNCC	2 cut(s)	350, 668
PsuI	RGATCY	2 cut(s)	192, 436
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	8 cut(s)	120, 183, 245, 299, 338, 497, 660, 929
SatI	GCNGC	4 cut(s)	272, 637, 774, 795
Sau3AI	GATC	3 cut(s)	192, 436, 610
Sau96I	GGNCC	2 cut(s)	350, 668
SchI	GAGTC	3 cut(s)	145, 750, 780
ScrFI	CCNGG	3 cut(s)	348, 413, 856
SduI	GDGCHC	2 cut(s)	622, 852
SfaNI	GCATC	1 cut(s)	389
SmiI	ATTTAAAT	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	290
SphI	GCATGC	1 cut(s)	801
Sse9I	AATT	7 cut(s)	224, 246, 463, 499, 575, 656, 707
SsiI	CCGC	3 cut(s)	150, 178, 271
SspMI	CTAG	2 cut(s)	752, 893
StyD4I	CCNGG	3 cut(s)	346, 411, 854
SwaI	ATTTAAAT	1 cut(s)	661
TaaI	ACNGT	6 cut(s)	10, 163, 170, 481, 971, 1006
TaiI	ACGT	1 cut(s)	849
TaqII	GACCGA	1 cut(s)	913
TasI	AATT	7 cut(s)	224, 246, 463, 499, 575, 656, 707
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	238, 517
Tru1I	TTAA	8 cut(s)	120, 183, 245, 299, 338, 497, 660, 929
Tru9I	TTAA	8 cut(s)	120, 183, 245, 299, 338, 497, 660, 929
TscAI	CASTG	3 cut(s)	166, 620, 976
TseI	GCWGC	3 cut(s)	636, 773, 794
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	3 cut(s)	166, 620, 976
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	2 cut(s)	575, 656
XceI	RCATGY	1 cut(s)	801
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XmiI	GTMKAC	1 cut(s)	1008
XspI	CTAG	2 cut(s)	752, 893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.