Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

58272573 .. 58279141

Gene Structure 6569 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40298

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3981 bp

ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTCTTTACTCCACTGAGAGTTTCTTTTTTGATGAGTACTTCGCCGATAGTTGTCCAGCCTACTTCTGTAATGACATAGTAGGCAGTATCTTCTTCCCCTTCAAAAACATAACACAGAGTCGTCCTGAATGCGGATTGTACACTGTCAACTGTTCTGACCGCCATAATCCGAAGATCCGGCTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATTTCTCGATCAAATTTCGTTGTTATCAATGACAGCCGGCTTCAGGAGCGTATAGAGCGCTTAGCAGGAGATACCTGTGATGATGATGTTTTCAAAGATTTAAGTCTTCCAGGCCCTACTCCCATCCTCCATACATCCACAAACAACCTTACCCTGTTCAGATGCAACAACACCCAGGAGAAAACTCCTTACAAGTATCTTAACTATGCCTGCAGGAGTGTAAATTATATTTACTATACTATATCAAATGATAGTTTACATTGCTCAGCCATTCAGATTCCCATACTTCCAGATTCCCGTCCCAATGTCTATAATCGTTCTGCATTGACTGCTAAATTCTCCCTTCAAGTGAGAAATACCAAAGAATGTGATCATTGTTATCATAGAGGAGGTAAATGCTTTGATAACAAGGGAAAATTGAAATGTGCCTACCCACAATGCTGGGATGAGAAGGGACAATTCAATTGTTCCCTCGCAAAAAAAGGTATATGCCACAATGAGGAGGAGGAAGGCAAATGTGTCCCCCCACAAGAAAAATGCTGGAATGAGAAGGGACAATTCAATTGTTCCCTTGCAAAAAAAGGTATATGCCACGATGACGAGGAGGAAGGCAAATGTGCCAAAGCAGGAAAACATGTGGCTGTGAAGCTAGGACTTGGTATTGGACTTGGAGGTGCAGCACTCCTTGGATTCCTTGCAGCATGCTTGTTTCTTTTCAGGCGTTACAAAAAAAAAATTGCTTCTTCAAACATACTCTCCAGGAACATTTCTTCTCAGCCCTACTCAAAATCAGACCTAGAAGGGGGCAACGCCTACTTTGGTGTTTCGGTCTTCACTTACGAGGAACTTGAAGAAGCCACTAATCATTTTGACAGTGAAAAGGAGCTTGGAGATGGAGGTTTTGGAACTGTCTACTATGGCATACTCAAAGATGGCCGGGAAGTTGCAGTCAAGCGTTTATACGAGCACAATTACAAACGTGTGGAACAGTTTATGAATGAAATTGAAATTCTCACCCGTCTGCGCCACAAAAACTTAGTCTCCCTCTATGGTTGCACTTCACGCCGCAGCCGTGAACTCATCCTTGTCTATGAATACATTCCCAATGGCACTGTTGCTGATCATCTCCACGGCGACCTAGCAGAACATGGTTTACTCACGTGGCCTATTCGTATGAGCATTGCCATAGAAACTGCCAATGCACTGTCTTACCTCCATGTTTCTGATATTGTGCATCGTGATGTGAAGACTACCAACATTCTCCTTGACAACAATTTCTGTGTTAAAGTTGCAGATTTTGGGCTCTCCCGGCTTTTTCCCCTTGATGTCACTCATGTCTCTACTGCGCCACAAGGGACCCCTGGTTATGTTGACCCAGAGTATCACCAGTGTTACCAGCTAACTAGTAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTCATTGAGCTGATATCATCTCTGCCAGCAGTTGATATAACTAGGCATAGGCATGAGATCAATTTGTCTAACATAGCCATAAACAAGATTCAAAGAGGTTTATACAGTGAGCTGGTAGATTCATGTCTGGGGTTTGAGTCAGATCATGAAGTTAAAAGGATGACAATTGCAGTGGCAGAGTTGGCTTTCCAATGTTTGCAGCAGGACAATGATGCAAGGCCTACCATGTCTGAGGTTTTGGAAACTTTGCAGATTATTGAAAGTGGAAAAGATGTTCCAGAGAATTTGGAGGAGGACTTTGGTGATGTTGAGATGAGAAAGAGTATACAGCCACCACCTTCACCAGAATGTGATGAGCTTCAGTTGTTGAAGAACATGAGGCCACCATTTTCACCAATTTCCGTGACCCAAAACTGGCCTAGCACTAGGTCTAATACACCTAATGCCAAGAGAAACTACAGACGTTGCCCACCCTACTTCTGTAACGGTAGCAACATCTCTTTCCCTTTCAGATATAAGGAACATCCTCGTGAATGCGGATTGTATTCTGTTGATTGTTCTGAAGGCTTTCCAAGGATCCAACTCAAAGAGGGAGGATACTGGCATGAATTTGAAAGCTTATCTCTGTCGAATAAGATCATCTCGATCAATGACAAAGAGCTTCAGCAGCGACTGGAAAGAGATTCCTGCGATGATGAAAGCCTCGACTATTTAAGTCTTCCCGGCCCTTCTCCAATATCTGATGTGTCCACCCCATCCAATCTGACCCTGTTCAAATGCAGCAACACGCCGAACCCAACTAATCCGGATCTTGAACTCTGCTGCAGAGGTGCTTCCCATACCTATTATTATAATTCTTCCAATCATACACCAATACCTCCTCCGCTGTGTTCAGTTGTTCAGCTCCCCCGTCTTCCGGGTTGGTATCCTTTGAATCAACATCACTCTAACCTCACTGTTAACTTCACCGTTCAAGTGACAGTATCCAAAAAATGTTCTAAATGCTATGATAGAGGAGGCATATGCCTGGCACACGAGGGAGAATCTGATTGTTCAGTCGCACTAAAAGGTATCGGACTTGGAGTACCAACACTTCTTGCAGCATGCTTCTTTATTCCGTGGTGTTACAGACAAAAATGTGCTTTAAACTTGGTATTATCCACGAACATTTCAAATTCAGACAGAGAAGGGCGCAGCGTCTACTTTGGTGCTTCACTCTTCACCTACAAAGAACTTGAGGAAGCAACTAATCATTTTGATTGTGAAAAAGAAATTGGAGATGGAGGTTTTGGAATTGTATATCATGGCAAACTTAAAGATGGCCGAGAAGTTGCAGTCAAGCGATTATACGAGCACAATTACAGACGTGCAGAACAATTTATGAATGAAATTGAAATTCTTACCCATCTGCGCCACAAAAATTTAGTCACCCTCTATGGAGGCACTTCACGCCACAGCCGTGATCTCCTTCTTGTATACGAGTACATTGCCAATGGCACTGTTGCTGATCATCTCCATGGAGACCGATCTGCCACAGGCCCACTTTCATGGCCTATTCGCATGAGCATTGCCAAAGAAACTGCAAGCGCATTGTGTTACCTACATGCTTCTGATATAGTACACCGAGATGTGAAGACTACCAACATTCTCCTTGACCACAACTTTTCTGTTAAGGTTGCTGATTTTGGGATCTCCCGGCTTTTCCCCCTTGATGCCACTCATGTCTCAACTGCTCCACAAGGGACCGCTGGTTATGTTGATCCAGAGTATCACCAATGCTACCAGCTAGCTCCCAAGAGTGATGTTTATAGTTTTGGGGTTGTTCTCGTTGAGCTTATATCATCTTTACCAGCAGTTGATATAACAAGGCATAGGGATGAAATCAACCTGTCTAACATAGCGATAAACAAGATTCAAAATGGCTTATACTGTGAGCTGGTGGATTCATGTCTTGGTTCTGAGTCAGATCCTGAAGTTAAAAGGATGACAACTGCAGTAGCAGACTTGGCTTTTCAGTGTCTTCGGCAGGATAGGGATGCAAGGCCTAACATGTGTGAGGTTTTGGAGGCTTTGATGAAAATCGAAAGCAGGAACGATGTGCCAAAGAATCTAAACGCAGCATTCCGTGATGCAGGGATGGGAGAGATTATCCAGCCATATTCTTCACCAGATTGTGACCGGATTGGGTCGTTGAAGAACATGAAGGCACAATCTTCACCAAATTCCGTGATGGAAAAATGGTCTAGCACTAGGTCTACTACACCTAATGCCAGTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

1326

Amino Acids

149.15

Weight (kDa)

6.06

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	379 - 648	5e-49	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	381 - 650	7.2e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	988 - 1256	5.2e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	988 - 1258	2.1e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2553
AccI	GTMKAC	5 cut(s)	1176, 2026, 2901, 3177, 3956
AccIII	TCCGGA	1 cut(s)	2506
AciI	CCGC	6 cut(s)	180, 208, 1330, 2238, 2585, 3447
AclWI	GGATC	7 cut(s)	217, 2272, 2285, 2517, 3398, 3455, 3662
AcoI	YGGCCR	2 cut(s)	1198, 3022
AcsI	RAATTY	9 cut(s)	277, 599, 1272, 1984, 2309, 2875, 3096, 3121, 3922
AcuI	CTGAAG	5 cut(s)	290, 2045, 2283, 2348, 3693
AcvI	CACGTG	1 cut(s)	1425
AfaI	GTAC	5 cut(s)	86, 188, 2787, 3185, 3321
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	6 cut(s)	179, 307, 763, 1066, 2115, 2617
AflIII	ACRYGT	3 cut(s)	898, 1243, 3750
AhlI	ACTAGT	1 cut(s)	1667
AjiI	CACGTC	1 cut(s)	3068
AjnI	CCWGG	5 cut(s)	373, 438, 1022, 1624, 2727
AjuI	GAANNNNNNNTTGG	4 cut(s)	1134, 1166, 2958, 2990
AleI	CACNNNNGTG	1 cut(s)	3159
AloI	GAACNNNNNNTCC	2 cut(s)	1959, 1991
Alw21I	GWGCWC	2 cut(s)	1233, 3057
Alw26I	GTCTC	4 cut(s)	1309, 1606, 3216, 3430
AlwI	GGATC	7 cut(s)	217, 2272, 2285, 2517, 3398, 3455, 3662
AlwNI	CAGNNNCTG	3 cut(s)	2374, 3671, 3978
Aor13HI	TCCGGA	1 cut(s)	2506
Aor51HI	AGCGCT	1 cut(s)	323
ApoI	RAATTY	9 cut(s)	277, 599, 1272, 1984, 2309, 2875, 3096, 3121, 3922
ArsI	GACNNNNNNTTYG	4 cut(s)	1287, 1319, 3111, 3143
Asp700I	GAANNNNTTC	2 cut(s)	1362, 2268
AspLEI	GCGC	6 cut(s)	324, 1290, 1612, 2895, 3114, 3290
AspS9I	GGNCC	5 cut(s)	377, 1620, 2426, 3239, 3444
AsuC2I	CCSGG	5 cut(s)	1202, 1573, 2424, 2619, 3397
AsuNHI	GCTAGC	1 cut(s)	3487
AvaII	GGWCC	2 cut(s)	1620, 3444
BamHI	GGATCC	1 cut(s)	2277
BanII	GRGCYC	1 cut(s)	1569
BarI	GAAGNNNNNNTAC	2 cut(s)	2778, 2810
BauI	CACGAG	2 cut(s)	2229, 2735
BbrPI	CACGTG	1 cut(s)	1425
BbsI	GAAGAC	8 cut(s)	25, 362, 1087, 1517, 2411, 2606, 3341, 3713
Bbv12I	GWGCWC	2 cut(s)	1233, 3057
BceAI	ACGGC	3 cut(s)	1320, 1411, 3144
BcgI	CGANNNNNNTGC	2 cut(s)	3170, 3204
BciT130I	CCWGG	5 cut(s)	375, 440, 1024, 1626, 2729
BciVI	GTATCC	4 cut(s)	236, 2291, 2637, 2695
BclI	TGATCA	3 cut(s)	634, 1384, 3208
BcnI	CCSGG	5 cut(s)	1202, 1573, 2424, 2619, 3397
BcoDI	GTCTC	4 cut(s)	1309, 1606, 3216, 3430
BcuI	ACTAGT	1 cut(s)	1667
BfmI	CTRYAG	4 cut(s)	475, 2158, 2524, 3693
BfoI	RGCGCY	1 cut(s)	325
BfuI	GTATCC	4 cut(s)	236, 2291, 2637, 2695
BlpI	GCTNAGC	2 cut(s)	325, 529
BmcAI	AGTACT	1 cut(s)	86
Bme18I	GGWCC	2 cut(s)	1620, 3444
BmgBI	CACGTC	1 cut(s)	3068
BmgT120I	GGNCC	5 cut(s)	377, 1620, 2426, 3239, 3444
BmiI	GGNNCC	4 cut(s)	1621, 1622, 2279, 3445
BmsI	GCATC	6 cut(s)	416, 1507, 1903, 3403, 3727, 3820
BmtI	GCTAGC	1 cut(s)	3491
BpiI	GAAGAC	8 cut(s)	25, 362, 1087, 1517, 2411, 2606, 3341, 3713
BplI	GAGNNNNNCTC	2 cut(s)	1686, 1718
BpmI	CTGGAG	1 cut(s)	1006
Bpu1102I	GCTNAGC	2 cut(s)	325, 529
BpuEI	CTTGAG	1 cut(s)	2957
BpuMI	CCSGG	5 cut(s)	1202, 1573, 2424, 2619, 3397
BsaAI	YACGTR	1 cut(s)	1425
BsaBI	GATNNNNATC	1 cut(s)	3779
BsaI	GGTCTC	1 cut(s)	3216
BsaJI	CCNNGG	8 cut(s)	9, 438, 949, 1393, 1624, 2273, 2819, 3217
BsaWI	WCCGGW	2 cut(s)	2506, 3879
BsaXI	ACNNNNNCTCC	4 cut(s)	1004, 1034, 1289, 1319
Bsc4I	CCNNNNNNNGG	6 cut(s)	179, 307, 763, 1066, 2115, 2617
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	6 cut(s)	251, 1651, 2120, 2306, 2379, 3972
Bse3DI	GCAATG	4 cut(s)	523, 1443, 3186, 3267
Bse8I	GATNNNNATC	1 cut(s)	3779
BseAI	TCCGGA	1 cut(s)	2506
BseBI	CCWGG	5 cut(s)	375, 440, 1024, 1626, 2729
BseDI	CCNNGG	8 cut(s)	9, 438, 949, 1393, 1624, 2273, 2819, 3217
BseJI	GATNNNNATC	1 cut(s)	3779
BseLI	CCNNNNNNNGG	6 cut(s)	179, 307, 763, 1066, 2115, 2617
BseMI	GCAATG	4 cut(s)	523, 1443, 3186, 3267
BseMII	CTCAG	5 cut(s)	54, 543, 1052, 1923, 3651
BseNI	ACTGG	6 cut(s)	251, 1651, 2120, 2306, 2379, 3972
BseRI	GAGGAG	7 cut(s)	666, 779, 782, 881, 2006, 2571, 2730
BseYI	CCCAGC	1 cut(s)	705
BsgI	GTGCAG	2 cut(s)	960, 3090
BsiHKAI	GWGCWC	2 cut(s)	1233, 3057
BsiSI	CCGG	9 cut(s)	226, 301, 1201, 1573, 2424, 2507, 2618, 3397, 3880
BslFI	GGGAC	6 cut(s)	549, 732, 770, 831, 1633, 3457
BslI	CCNNNNNNNGG	6 cut(s)	179, 307, 763, 1066, 2115, 2617
BsmAI	GTCTC	4 cut(s)	1309, 1606, 3216, 3430
BsmFI	GGGAC	6 cut(s)	549, 732, 770, 831, 1633, 3457
BsmI	GAATGC	3 cut(s)	182, 2240, 3821
Bso31I	GGTCTC	1 cut(s)	3216
Bsp1286I	GDGCHC	3 cut(s)	1233, 1569, 3057
Bsp13I	TCCGGA	1 cut(s)	2506
Bsp1407I	TGTACA	1 cut(s)	186
Bsp1720I	GCTNAGC	2 cut(s)	325, 529
Bsp19I	CCATGG	1 cut(s)	3217
BspACI	CCGC	6 cut(s)	180, 208, 1330, 2238, 2585, 3447
BspCNI	CTCAG	5 cut(s)	55, 542, 1051, 1924, 3652
BspEI	TCCGGA	1 cut(s)	2506
BspHI	TCATGA	1 cut(s)	1846
BspLI	GGNNCC	4 cut(s)	1621, 1622, 2279, 3445
BspMAI	CTGCAG	3 cut(s)	479, 2528, 3697
BspOI	GCTAGC	1 cut(s)	3491
BspPI	GGATC	7 cut(s)	217, 2272, 2285, 2517, 3398, 3455, 3662
BspTNI	GGTCTC	1 cut(s)	3216
BsrDI	GCAATG	4 cut(s)	523, 1443, 3186, 3267
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	6 cut(s)	251, 1651, 2120, 2306, 2379, 3972
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	8 cut(s)	9, 438, 949, 1393, 1624, 2273, 2819, 3217
BssNAI	GTATAC	2 cut(s)	2027, 3178
BssSI	CACGAG	2 cut(s)	2229, 2735
BssT1I	CCWWGG	3 cut(s)	949, 2273, 3217
Bst1107I	GTATAC	2 cut(s)	2027, 3178
Bst2BI	CACGAG	2 cut(s)	2229, 2735
Bst2UI	CCWGG	5 cut(s)	375, 440, 1024, 1626, 2729
Bst6I	CTCTTC	1 cut(s)	2924
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	1425
BstC8I	GCNNGC	7 cut(s)	302, 475, 967, 1728, 2806, 3286, 3489
BstDEI	CTNAG	7 cut(s)	63, 325, 529, 1038, 1300, 1932, 3660
BstDSI	CCRYGG	4 cut(s)	9, 1393, 2819, 3217
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	6 cut(s)	324, 1290, 1612, 2895, 3114, 3290
BstMAI	GTCTC	4 cut(s)	1309, 1606, 3216, 3430
BstNI	CCWGG	5 cut(s)	375, 440, 1024, 1626, 2729
BstNSI	RCATGY	5 cut(s)	902, 969, 2808, 3308, 3754
BstSFI	CTRYAG	4 cut(s)	475, 2158, 2524, 3693
BstV2I	GAAGAC	8 cut(s)	25, 362, 1087, 1517, 2411, 2606, 3341, 3713
BstX2I	RGATCY	5 cut(s)	222, 2277, 2509, 3390, 3667
BstXI	CCANNNNNNTGG	2 cut(s)	705, 3249
BstYI	RGATCY	5 cut(s)	222, 2277, 2509, 3390, 3667
BstZ17I	GTATAC	2 cut(s)	2027, 3178
BsuI	GTATCC	4 cut(s)	236, 2291, 2637, 2695
BtgI	CCRYGG	4 cut(s)	9, 1393, 2819, 3217
BtgZI	GCGATG	1 cut(s)	2406
BtrI	CACGTC	1 cut(s)	3068
BtsI	GCAGTG	1 cut(s)	1878
Cac8I	GCNNGC	7 cut(s)	302, 475, 967, 1728, 2806, 3286, 3489
CaiI	CAGNNNCTG	3 cut(s)	2374, 3671, 3978
CciI	TCATGA	1 cut(s)	1846
CfoI	GCGC	6 cut(s)	324, 1290, 1612, 2895, 3114, 3290
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	5 cut(s)	377, 1620, 2426, 3239, 3444
CseI	GACGC	1 cut(s)	2887
Csp6I	GTAC	5 cut(s)	85, 187, 2786, 3184, 3320
CspCI	CAANNNNNGTGG	2 cut(s)	1854, 1889
CviQI	GTAC	5 cut(s)	85, 187, 2786, 3184, 3320
DdeI	CTNAG	7 cut(s)	63, 325, 529, 1038, 1300, 1932, 3660
DraI	TTTAAA	1 cut(s)	2847
EaeI	YGGCCR	2 cut(s)	1198, 3022
Eam1104I	CTCTTC	1 cut(s)	2924
EarI	CTCTTC	1 cut(s)	2924
Eco130I	CCWWGG	3 cut(s)	949, 2273, 3217
Eco147I	AGGCCT	2 cut(s)	1921, 3745
Eco24I	GRGCYC	1 cut(s)	1569
Eco31I	GGTCTC	1 cut(s)	3216
Eco32I	GATATC	1 cut(s)	1716
Eco47I	GGWCC	2 cut(s)	1620, 3444
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	5 cut(s)	290, 2045, 2283, 2348, 3693
Eco72I	CACGTG	1 cut(s)	1425
EcoO109I	RGGNCCY	2 cut(s)	377, 1620
EcoRII	CCWGG	5 cut(s)	373, 438, 1022, 1624, 2727
EcoRV	GATATC	1 cut(s)	1716
EcoT14I	CCWWGG	3 cut(s)	949, 2273, 3217
EcoT38I	GRGCYC	1 cut(s)	1569
ErhI	CCWWGG	3 cut(s)	949, 2273, 3217
FaqI	GGGAC	6 cut(s)	549, 732, 770, 831, 1633, 3457
FauNDI	CATATG	1 cut(s)	2723
FbaI	TGATCA	3 cut(s)	634, 1384, 3208
FblI	GTMKAC	5 cut(s)	1176, 2026, 2901, 3177, 3956
FriOI	GRGCYC	1 cut(s)	1569
GlaI	GCGC	6 cut(s)	323, 1289, 1611, 2894, 3113, 3289
GsaI	CCCAGC	1 cut(s)	709
GsuI	CTGGAG	1 cut(s)	1006
HaeII	RGCGCY	1 cut(s)	325
HapII	CCGG	9 cut(s)	226, 301, 1201, 1573, 2424, 2507, 2618, 3397, 3880
HgaI	GACGC	1 cut(s)	2887
HhaI	GCGC	6 cut(s)	324, 1290, 1612, 2895, 3114, 3290
Hin6I	GCGC	6 cut(s)	322, 1288, 1610, 2893, 3112, 3288
HinP1I	GCGC	6 cut(s)	322, 1288, 1610, 2893, 3112, 3288
HincII	GTYRAC	3 cut(s)	196, 1636, 2662
HindII	GTYRAC	3 cut(s)	196, 1636, 2662
HindIII	AAGCTT	1 cut(s)	2317
HpaI	GTTAAC	1 cut(s)	2662
HpaII	CCGG	9 cut(s)	226, 301, 1201, 1573, 2424, 2507, 2618, 3397, 3880
HpyCH4IV	ACGT	4 cut(s)	1243, 1424, 2164, 3067
HpyF3I	CTNAG	7 cut(s)	63, 325, 529, 1038, 1300, 1932, 3660
HpySE526I	ACGT	4 cut(s)	1243, 1424, 2164, 3067
HspAI	GCGC	6 cut(s)	322, 1288, 1610, 2893, 3112, 3288
KflI	GGGWCCC	1 cut(s)	1620
Kpn2I	TCCGGA	1 cut(s)	2506
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Ksp22I	TGATCA	3 cut(s)	634, 1384, 3208
KspAI	GTTAAC	1 cut(s)	2662
LmnI	GCTCC	5 cut(s)	310, 1147, 2610, 3439, 3496
LweI	GCATC	6 cut(s)	416, 1507, 1903, 3403, 3727, 3820
MaeII	ACGT	4 cut(s)	1243, 1424, 2164, 3067
MfeI	CAATTG	4 cut(s)	254, 727, 826, 1866
MflI	RGATCY	5 cut(s)	222, 2277, 2509, 3390, 3667
MhlI	GDGCHC	3 cut(s)	1233, 1569, 3057
MlyI	GAGTC	3 cut(s)	175, 1847, 3671
MmeI	TCCRAC	1 cut(s)	2305
MroI	TCCGGA	1 cut(s)	2506
MroNI	GCCGGC	1 cut(s)	300
MroXI	GAANNNNTTC	2 cut(s)	1362, 2268
MslI	CAYNNNNRTG	9 cut(s)	1503, 1752, 2047, 2229, 3159, 3216, 3247, 3327, 3576
MspA1I	CMGCKG	2 cut(s)	2587, 3449
MspI	CCGG	9 cut(s)	226, 301, 1201, 1573, 2424, 2507, 2618, 3397, 3880
MunI	CAATTG	4 cut(s)	254, 727, 826, 1866
Mva1269I	GAATGC	3 cut(s)	182, 2240, 3821
MvaI	CCWGG	5 cut(s)	375, 440, 1024, 1626, 2729
NaeI	GCCGGC	1 cut(s)	302
NciI	CCSGG	5 cut(s)	1202, 1573, 2424, 2619, 3397
NcoI	CCATGG	1 cut(s)	3217
NdeI	CATATG	1 cut(s)	2723
NgoMIV	GCCGGC	1 cut(s)	300
NheI	GCTAGC	1 cut(s)	3487
NlaIV	GGNNCC	4 cut(s)	1621, 1622, 2279, 3445
NmeAIII	GCCGAG	1 cut(s)	3050
NmuCI	GTSAC	5 cut(s)	1591, 2104, 2677, 3127, 3875
NspI	RCATGY	5 cut(s)	902, 969, 2808, 3308, 3754
OliI	CACNNNNGTG	1 cut(s)	3159
PaeI	GCATGC	2 cut(s)	969, 2808
PagI	TCATGA	1 cut(s)	1846
PceI	AGGCCT	2 cut(s)	1921, 3745
PciI	ACATGT	2 cut(s)	898, 3750
PcsI	WCGNNNNNNNCGW	2 cut(s)	1333, 3157
PctI	GAATGC	3 cut(s)	182, 2240, 3821
PdiI	GCCGGC	1 cut(s)	302
PdmI	GAANNNNTTC	2 cut(s)	1362, 2268
PfoI	TCCNGGA	1 cut(s)	1022
PleI	GAGTC	3 cut(s)	174, 1846, 3670
PmaCI	CACGTG	1 cut(s)	1425
PmlI	CACGTG	1 cut(s)	1425
PpsI	GAGTC	3 cut(s)	174, 1846, 3670
Ppu21I	YACGTR	1 cut(s)	1425
PpuMI	RGGWCCY	1 cut(s)	1620
PscI	ACATGT	2 cut(s)	898, 3750
PsiI	TTATAA	1 cut(s)	2553
Psp5II	RGGWCCY	1 cut(s)	1620
Psp6I	CCWGG	5 cut(s)	373, 438, 1022, 1624, 2727
PspCI	CACGTG	1 cut(s)	1425
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	5 cut(s)	373, 438, 1022, 1624, 2727
PspN4I	GGNNCC	4 cut(s)	1621, 1622, 2279, 3445
PspPI	GGNCC	5 cut(s)	377, 1620, 2426, 3239, 3444
PspPPI	RGGWCCY	1 cut(s)	1620
PsrI	GAACNNNNNNTAC	2 cut(s)	1401, 1433
PstI	CTGCAG	3 cut(s)	479, 2528, 3697
PstNI	CAGNNNCTG	3 cut(s)	2374, 3671, 3978
PsuI	RGATCY	5 cut(s)	222, 2277, 2509, 3390, 3667
RsaI	GTAC	5 cut(s)	86, 188, 2787, 3185, 3321
RsaNI	GTAC	5 cut(s)	85, 187, 2786, 3184, 3320
RseI	CAYNNNNRTG	9 cut(s)	1503, 1752, 2047, 2229, 3159, 3216, 3247, 3327, 3576
Sau96I	GGNCC	5 cut(s)	377, 1620, 2426, 3239, 3444
SbfI	CCTGCAGG	1 cut(s)	479
ScaI	AGTACT	1 cut(s)	86
SchI	GAGTC	3 cut(s)	175, 1847, 3671
SdaI	CCTGCAGG	1 cut(s)	479
SduI	GDGCHC	3 cut(s)	1233, 1569, 3057
SfaNI	GCATC	6 cut(s)	416, 1507, 1903, 3403, 3727, 3820
SfcI	CTRYAG	4 cut(s)	475, 2158, 2524, 3693
SinI	GGWCC	2 cut(s)	1620, 3444
SmiMI	CAYNNNNRTG	9 cut(s)	1503, 1752, 2047, 2229, 3159, 3216, 3247, 3327, 3576
SmlI	CTYRAG	1 cut(s)	2936
SmoI	CTYRAG	1 cut(s)	2936
SpeI	ACTAGT	1 cut(s)	1667
SphI	GCATGC	2 cut(s)	969, 2808
Sse8387I	CCTGCAGG	1 cut(s)	479
SseBI	AGGCCT	2 cut(s)	1921, 3745
SsiI	CCGC	6 cut(s)	180, 208, 1330, 2238, 2585, 3447
StuI	AGGCCT	2 cut(s)	1921, 3745
StyI	CCWWGG	3 cut(s)	949, 2273, 3217
TaiI	ACGT	4 cut(s)	1246, 1427, 2167, 3070
TaqI	TCGA	5 cut(s)	271, 2330, 2345, 2406, 3783
TaqII	GACCGA	2 cut(s)	1081, 3240
TatI	WGTACW	4 cut(s)	84, 186, 3183, 3319
TauI	GCSGC	1 cut(s)	1332
TseFI	GTSAC	5 cut(s)	1591, 2104, 2677, 3127, 3875
Tsp45I	GTSAC	5 cut(s)	1591, 2104, 2677, 3127, 3875
TspGWI	ACGGA	4 cut(s)	2092, 2808, 3815, 3916
VpaK11BI	GGWCC	2 cut(s)	1620, 3444
XapI	RAATTY	9 cut(s)	277, 599, 1272, 1984, 2309, 2875, 3096, 3121, 3922
XceI	RCATGY	5 cut(s)	902, 969, 2808, 3308, 3754
XmiI	GTMKAC	5 cut(s)	1176, 2026, 2901, 3177, 3956
XmnI	GAANNNNTTC	2 cut(s)	1362, 2268
ZrmI	AGTACT	1 cut(s)	86

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.