Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

50481221 .. 50481988

Gene Structure 768 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG341900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTCTTTACTCCGCTGAGAGTTGTCCACCGTTCTTCTGTAATGACAGAGTAGGTAGTATCTCCTACCCCTTTAAAAACACAGCACAGAGACCTGAATGCGGATTGTTCACTGTCAACTGTTCTGATGGCCATAATCCGAAGATCCAACTTAAAGATGGAGGATACTGGTTCCAATTGGAAAAAATGACTGGATCAAGTTCCGTTTTAATCAATGACAGGGGGCTTCAGGAGCGCATAGAGCGCTTAAAAGGAGATAGCTGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTACTCCCATCTTCTATACAACCACAGACAACCTTACCCTGTTCAGATGCAACAAGACCCAGGAGAAACCTCCTTACAAGGATCTTCACCATGCTTGCACGAGTGTAAATTATATTTACTATACTGTATCAAATGATAGTTTAAATTGCTCAGCCATTCAGATTCCCATACTTCCACCATCTCCTTCCAATGTCTATAATCCTTCTGCATTGACTGCTGAATTCCCCCTTCAAGTGTATTTTACCGAAGAATGTGATCAGTGTGCTCATAGAGGAGGTAGATGCTTGGATGACAATGGAGAATTGAAATGTGGCCCCCAACAAGAAGATAAATGCTGGTATGAGAAGGGAGAACACAAATGTCCCAAAGCAGGTAAATGCATCGAAATTTGTGTTTGTACTATTTGTCTTTTCATCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

255

Amino Acids

28.68

Weight (kDa)

5.38

Isoelectric Point (pI)

51.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	707
AciI	CCGC	2 cut(s)	60, 147
AclWI	GGATC	3 cut(s)	184, 247, 435
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	2 cut(s)	566, 732
AcuI	CTGAAG	1 cut(s)	257
AfaI	GTAC	1 cut(s)	745
AfeI	AGCGCT	1 cut(s)	290
AfiI	CCNNNNNNNGG	2 cut(s)	146, 716
AgsI	TTSAA	3 cut(s)	325, 578, 652
AjnI	CCWGG	2 cut(s)	340, 405
AluBI	AGCT	1 cut(s)	306
AluI	AGCT	1 cut(s)	306
Alw21I	GWGCWC	1 cut(s)	613
Alw26I	GTCTC	1 cut(s)	130
AlwI	GGATC	3 cut(s)	184, 247, 435
Aor51HI	AGCGCT	1 cut(s)	290
AoxI	GGCC	3 cut(s)	175, 343, 658
ApoI	RAATTY	2 cut(s)	566, 732
AspLEI	GCGC	2 cut(s)	282, 291
AspS9I	GGNCC	2 cut(s)	344, 659
AsuHPI	GGTGA	1 cut(s)	425
BalI	TGGCCA	1 cut(s)	177
BauI	CACGAG	1 cut(s)	445
BbsI	GAAGAC	2 cut(s)	25, 329
Bbv12I	GWGCWC	1 cut(s)	613
BccI	CCATC	4 cut(s)	167, 197, 362, 532
BciT130I	CCWGG	2 cut(s)	342, 407
BciVI	GTATCC	1 cut(s)	203
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	1 cut(s)	130
BfoI	RGCGCY	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	707
BfuI	GTATCC	1 cut(s)	203
BlpI	GCTNAGC	1 cut(s)	496
Bme1390I	CCNGG	2 cut(s)	342, 407
BmgT120I	GGNCC	2 cut(s)	344, 659
BmiI	GGNNCC	2 cut(s)	218, 661
BmrFI	CCNGG	2 cut(s)	342, 407
BmsI	GCATC	3 cut(s)	383, 617, 735
BpiI	GAAGAC	2 cut(s)	25, 329
Bpu1102I	GCTNAGC	1 cut(s)	496
BsaI	GGTCTC	1 cut(s)	130
BsaJI	CCNNGG	2 cut(s)	9, 405
BsaWI	WCCGGW	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 716
Bse1I	ACTGG	2 cut(s)	218, 241
BseBI	CCWGG	2 cut(s)	342, 407
BseDI	CCNNGG	2 cut(s)	9, 405
BseGI	GGATG	2 cut(s)	640, 759
BseLI	CCNNNNNNNGG	2 cut(s)	146, 716
BseMII	CTCAG	2 cut(s)	54, 510
BseNI	ACTGG	2 cut(s)	218, 241
BseRI	GAGGAG	1 cut(s)	633
BshFI	GGCC	3 cut(s)	177, 345, 660
BsiHKAI	GWGCWC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	763
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	146, 716
BsmAI	GTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	149
BsnI	GGCC	3 cut(s)	177, 345, 660
Bso31I	GGTCTC	1 cut(s)	130
Bsp1286I	GDGCHC	1 cut(s)	613
Bsp143I	GATC	4 cut(s)	189, 239, 427, 601
Bsp1720I	GCTNAGC	1 cut(s)	496
BspACI	CCGC	2 cut(s)	60, 147
BspANI	GGCC	3 cut(s)	177, 345, 660
BspCNI	CTCAG	2 cut(s)	55, 509
BspLI	GGNNCC	2 cut(s)	218, 661
BspMI	ACCTGC	1 cut(s)	707
BspPI	GGATC	3 cut(s)	184, 247, 435
BspTNI	GGTCTC	1 cut(s)	130
BsrI	ACTGG	2 cut(s)	218, 241
BssECI	CCNNGG	2 cut(s)	9, 405
BssMI	GATC	4 cut(s)	189, 239, 427, 601
BssSI	CACGAG	1 cut(s)	445
Bst2BI	CACGAG	1 cut(s)	445
Bst2UI	CCWGG	2 cut(s)	342, 407
Bst4CI	ACNGT	5 cut(s)	10, 78, 160, 167, 472
BstAPI	GCANNNNNTGC	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	442
BstDEI	CTNAG	2 cut(s)	63, 496
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	640, 759
BstH2I	RGCGCY	1 cut(s)	292
BstHHI	GCGC	2 cut(s)	282, 291
BstKTI	GATC	4 cut(s)	192, 242, 430, 604
BstMAI	GTCTC	1 cut(s)	130
BstMBI	GATC	4 cut(s)	189, 239, 427, 601
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 277, 286, 288, 560
BstNI	CCWGG	2 cut(s)	342, 407
BstSCI	CCNGG	2 cut(s)	340, 405
BstV2I	GAAGAC	2 cut(s)	25, 329
BstX2I	RGATCY	2 cut(s)	189, 427
BstYI	RGATCY	2 cut(s)	189, 427
BsuI	GTATCC	1 cut(s)	203
BsuRI	GGCC	3 cut(s)	177, 345, 660
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	640, 759
BtsIMutI	CAGTG	2 cut(s)	156, 611
BveI	ACCTGC	1 cut(s)	707
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	2 cut(s)	282, 291
Cfr13I	GGNCC	2 cut(s)	344, 659
Csp6I	GTAC	1 cut(s)	744
CviAII	CATG	1 cut(s)	437
CviJI	RGCY	8 cut(s)	5, 14, 177, 271, 306, 345, 500, 660
CviKI_1	RGCY	8 cut(s)	5, 14, 177, 271, 306, 345, 500, 660
CviQI	GTAC	1 cut(s)	744
DdeI	CTNAG	2 cut(s)	63, 496
DpnI	GATC	4 cut(s)	191, 241, 429, 603
DpnII	GATC	4 cut(s)	189, 239, 427, 601
DraI	TTTAAA	2 cut(s)	121, 489
EaeI	YGGCCR	1 cut(s)	175
Eco31I	GGTCTC	1 cut(s)	130
Eco47III	AGCGCT	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	257
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRI	GAATTC	1 cut(s)	566
EcoRII	CCWGG	2 cut(s)	340, 405
EcoT22I	ATGCAT	1 cut(s)	728
FaeI	CATG	1 cut(s)	440
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	1 cut(s)	436
FbaI	TGATCA	1 cut(s)	601
FokI	GGATG	2 cut(s)	647, 746
GlaI	GCGC	2 cut(s)	281, 290
HaeII	RGCGCY	1 cut(s)	292
HaeIII	GGCC	3 cut(s)	177, 345, 660
HapII	CCGG	1 cut(s)	763
HhaI	GCGC	2 cut(s)	282, 291
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	2 cut(s)	280, 289
HinP1I	GCGC	2 cut(s)	280, 289
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	1 cut(s)	508
HpaII	CCGG	1 cut(s)	763
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	3 cut(s)	74, 156, 163
Hpy188I	TCNGA	4 cut(s)	172, 186, 392, 507
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	3 cut(s)	74, 156, 163
HpyAV	CCTTC	4 cut(s)	540, 558, 584, 685
HpyCH4III	ACNGT	5 cut(s)	10, 78, 160, 167, 472
HpyCH4V	TGCA	4 cut(s)	396, 444, 554, 726
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 277, 286, 288, 560
HpyF3I	CTNAG	2 cut(s)	63, 496
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	2 cut(s)	280, 289
Ksp22I	TGATCA	1 cut(s)	601
Kzo9I	GATC	4 cut(s)	189, 239, 427, 601
LmnI	GCTCC	1 cut(s)	277
LweI	GCATC	3 cut(s)	383, 617, 735
MalI	GATC	4 cut(s)	191, 241, 429, 603
MboI	GATC	4 cut(s)	189, 239, 427, 601
MboII	GAAGA	9 cut(s)	25, 35, 73, 199, 329, 349, 422, 605, 683
MfeI	CAATTG	1 cut(s)	221
MflI	RGATCY	2 cut(s)	189, 427
MhlI	GDGCHC	1 cut(s)	613
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	6 cut(s)	221, 454, 490, 566, 647, 732
MluNI	TGGCCA	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	4 cut(s)	200, 426, 611, 614
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	1 cut(s)	728
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	6 cut(s)	120, 198, 254, 293, 332, 488
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	763
MspR9I	CCNGG	2 cut(s)	342, 407
MunI	CAATTG	1 cut(s)	221
Mva1269I	GAATGC	1 cut(s)	149
MvaI	CCWGG	2 cut(s)	342, 407
MwoI	GCNNNNNNNGC	5 cut(s)	11, 277, 286, 288, 560
NdeII	GATC	4 cut(s)	189, 239, 427, 601
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	2 cut(s)	218, 661
NsiI	ATGCAT	1 cut(s)	728
PctI	GAATGC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	508
Psp6I	CCWGG	2 cut(s)	340, 405
PspGI	CCWGG	2 cut(s)	340, 405
PspN4I	GGNNCC	2 cut(s)	218, 661
PspPI	GGNCC	2 cut(s)	344, 659
PsuI	RGATCY	2 cut(s)	189, 427
RsaI	GTAC	1 cut(s)	745
RsaNI	GTAC	1 cut(s)	744
SaqAI	TTAA	6 cut(s)	120, 198, 254, 293, 332, 488
Sau3AI	GATC	4 cut(s)	189, 239, 427, 601
Sau96I	GGNCC	2 cut(s)	344, 659
ScrFI	CCNGG	2 cut(s)	342, 407
SduI	GDGCHC	1 cut(s)	613
SetI	ASST	7 cut(s)	103, 142, 308, 381, 418, 625, 721
SfaNI	GCATC	3 cut(s)	383, 617, 735
Sse9I	AATT	6 cut(s)	221, 454, 490, 566, 647, 732
SsiI	CCGC	2 cut(s)	60, 147
StyD4I	CCNGG	2 cut(s)	340, 405
TaaI	ACNGT	5 cut(s)	10, 78, 160, 167, 472
TaqI	TCGA	1 cut(s)	729
TasI	AATT	6 cut(s)	221, 454, 490, 566, 647, 732
TatI	WGTACW	1 cut(s)	743
TfiI	GAWTC	1 cut(s)	508
Tru1I	TTAA	6 cut(s)	120, 198, 254, 293, 332, 488
Tru9I	TTAA	6 cut(s)	120, 198, 254, 293, 332, 488
TscAI	CASTG	2 cut(s)	163, 611
TspDTI	ATGAA	1 cut(s)	748
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	2 cut(s)	163, 611
XapI	RAATTY	2 cut(s)	566, 732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
Zsp2I	ATGCAT	1 cut(s)	728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.