FvH4_4g26841

serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
28063440 .. 28066218
2779 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g26841.t1

Sequence Viewer

Length: 1887 bp
ATGGCTCCGGTGGCTTTGTTTATGTTCTCTGTTCTCAGTCATCTTCTAGTTCTTCACTACGTTGAGGGAACAAAAAGTTGTCCATCCTACTTCTGTAATGACCTAGTAGGTAATATTCATTTCCCTTTCAAAAACAGTTCACATCCTCCTGAATGCGGGCTGTACACAGTTGATTGCTCCAACCCTTCTCGTCCGAAGATCCAACTGATAGAGGGAGGATACTGGCATGAATTCGATAGCATTTCTCAAACAAATTCAGTTCATATCAACGACAGAGAGCTACTAAGCCCCTTGCCAATAGATCACTGCAGTGATGAAGTTCTCAAGGATATGAGTCTTCCCAGCCCCTCTCCACTCTTTGATCTATTGTTCACACACAATCTGACCCTCTTCAAATGTAACCTGGCTCTGGAAACTCCTGGTACAGATCTAACCTTAGGGTGCTTCAATACTAAGCATACTTATTATACTTCATACAATAAAAGTATACCAATTCCGGCACCACCATGTTCAATCTCTCATATTCCCATCCTTCCCAATAAATCTACTCTTCTAGCATTGACTACTGAGTTCTCCCTTCAAGTGCAAGTAACCAAGGAATGTTACGACTGTTTTGAAAAAAGACAAGGCAGATGCCTGATTGTCGATGGAAAATTTGAATGTTCCAGAAAAGGTCCAGGAAATGGCTTGAGATGGAAGCTAGGTCTAGGTTTAGGCATTGGAATTGGAGGTGCTGCACTTCTTGCGGGAGGCTTAGTCATTCTGTTGGGAAAAAATAAAAGGAATGCTTCTTTGAACTTCCTCTCAAGAAACATTTCTTCTCAGCCCTACTCAAACTCAGACCTAGAAGGAGACGGTGCCTACTTTGGTCTTTCAGTCATCGCCTACAACGAACTTGAAGAAGCCACTAATCATTTTGATAGCAAAAAGGAACTTGGAGATGGAGGGTTTGGAACTGTCTACCATGGGAAACTCAAAGATGGCCGAGAAGTTGCAGTGAAGCGCTTACACGAGCACAACTACAAACGTGAGGAACAGTTTATGAATGAAATTGAAATTATTACCCGCCTGCGCCATAAAAACTTAGTCGCCCTTTATGGCTGTACTTCACGCCGCAGCCGTGAACTCCTCCTTGTGTACGAATACATTCCCAATGGCACTGTTGCTGATCATCTCCATGGTGACCTAGCACACCACGGTTTACTCACATGGCCTATTCGTATGAGCATTGCCATAGAAACTGCCAATGCATTGTCTTACCTCCATGCTTCTGATATCCTGCATCGTGATGTGAAGACTAGCAACATTCTTCTTGATAACAATTTGTGCGTAAAAGTTGCAGATTTTGGACTCTCCCGGAATTTCCCCCTTGACATCACTCATGTCTCAACTGCTCCACAAGGCACCCCTGGTTATGTTGACCCCCAGTATCATCAATGTTACCAGCTAACTAGCAAGAGTGATGTTTACAGTTTTGGGGTTGTCCTCATTGAGCTTATATCGTCCATGCCAGCAGTTGATATAACTAGGCCGAGGGATGAAATCAATTTATCTAACTTAGCGCTAGACAAGATTCAAAAAGGTTTATACAATGAGCTGTTAGATTCATCTCTTGGGTTTGAGTCAGATGATGAAGTGAAAAGGATGACAATTTTAGTGGCAGAATTGGCATTTCAATGTTTGCAGCAGGACAACAACATGAGACCTACCATGTGTGAGGTTTTGGAGACTTTGAAGATGATTGAGAGCAGGAAGGATGTTCCAGAAAATTTAAGGAGGGGATTTGAAGATGCTGAGATGAGAAGTATGCAGCCACCACCTTCACCTAATTCCGTGACCCAAAAATGGCCTAGCACCGTGTCTACTGCAACTAATACAAGTCGCTGA

Protein Analysis

629

Amino Acids

70.1

Weight (kDa)

6.03

Isoelectric Point (pI)

50.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 307 - 576 4.1e-48 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 308 - 578 9.2e-48 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 499, 857, 1403
AccB7I CCANNNNNTGG 1 cut(s) 683
AccI GTMKAC 3 cut(s) 487, 960, 1862
AciI CCGC 4 cut(s) 156, 746, 1066, 1114
AclWI GGATC 1 cut(s) 193
AcoI YGGCCR 1 cut(s) 982
AcsI RAATTY 5 cut(s) 230, 253, 653, 1360, 1768
AfaI GTAC 4 cut(s) 164, 424, 1105, 1139
AfeI AGCGCT 2 cut(s) 1004, 1563
AfiI CCNNNNNNNGG 4 cut(s) 155, 409, 683, 1845
AjnI CCWGG 4 cut(s) 402, 418, 676, 1408
AleI CACNNNNGTG 1 cut(s) 309
AluBI AGCT 5 cut(s) 280, 700, 1447, 1495, 1597
AluI AGCT 5 cut(s) 280, 700, 1447, 1495, 1597
Alw21I GWGCWC 1 cut(s) 1017
Alw26I GTCTC 4 cut(s) 846, 1390, 1696, 1721
AlwI GGATC 1 cut(s) 193
Aor51HI AGCGCT 2 cut(s) 1004, 1563
AoxI GGCC 4 cut(s) 982, 1211, 1529, 1847
ApeKI GCWGC 4 cut(s) 734, 1116, 1684, 1810
ApoI RAATTY 5 cut(s) 230, 253, 653, 1360, 1768
Asp700I GAANNNNTTC 2 cut(s) 814, 1146
AspLEI GCGC 3 cut(s) 1005, 1074, 1564
AspS9I GGNCC 1 cut(s) 674
AsuC2I CCSGG 1 cut(s) 1357
AsuHPI GGTGA 2 cut(s) 1193, 1815
AvaII GGWCC 1 cut(s) 674
AxyI CCTNAGG 1 cut(s) 436
BanI GGYRCC 3 cut(s) 499, 857, 1403
BauI CACGAG 1 cut(s) 1010
BbsI GAAGAC 2 cut(s) 329, 1301
Bbv12I GWGCWC 1 cut(s) 1017
BbvI GCAGC 4 cut(s) 721, 1128, 1696, 1822
BccI CCATC 6 cut(s) 91, 536, 641, 687, 935, 974
BceAI ACGGC 1 cut(s) 1104
BciT130I CCWGG 4 cut(s) 404, 420, 678, 1410
BciVI GTATCC 1 cut(s) 212
BclI TGATCA 1 cut(s) 1168
BcnI CCSGG 1 cut(s) 1357
BcoDI GTCTC 4 cut(s) 846, 1390, 1696, 1721
BfmI CTRYAG 1 cut(s) 307
BfoI RGCGCY 2 cut(s) 1006, 1565
BfuI GTATCC 1 cut(s) 212
BglII AGATCT 1 cut(s) 427
BisI GCNGC 5 cut(s) 735, 1114, 1117, 1685, 1811
BlsI GCNGC 5 cut(s) 736, 1115, 1118, 1686, 1812
Bme1390I CCNGG 5 cut(s) 404, 420, 678, 1357, 1410
Bme18I GGWCC 1 cut(s) 674
BmgT120I GGNCC 1 cut(s) 674
BmiI GGNNCC 4 cut(s) 6, 501, 859, 1405
BmrFI CCNGG 5 cut(s) 404, 420, 678, 1357, 1410
BmrI ACTGGG 1 cut(s) 1420
BmsI GCATC 3 cut(s) 623, 1291, 1780
BmuI ACTGGG 1 cut(s) 1420
BpiI GAAGAC 2 cut(s) 329, 1301
BpuEI CTTGAG 3 cut(s) 308, 709, 790
BpuMI CCSGG 1 cut(s) 1357
BsaI GGTCTC 1 cut(s) 1696
BsaJI CCNNGG 6 cut(s) 594, 964, 1177, 1195, 1408, 1532
BsaWI WCCGGW 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 741, 771
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 409, 683, 1845
Bse1I ACTGG 2 cut(s) 227, 1426
Bse21I CCTNAGG 1 cut(s) 436
Bse3DI GCAATG 1 cut(s) 1227
BseBI CCWGG 4 cut(s) 404, 420, 678, 1410
BseDI CCNNGG 6 cut(s) 594, 964, 1177, 1195, 1408, 1532
BseGI GGATG 6 cut(s) 83, 142, 528, 1543, 1650, 1762
BseLI CCNNNNNNNGG 4 cut(s) 155, 409, 683, 1845
BseMI GCAATG 1 cut(s) 1227
BseMII CTCAG 5 cut(s) 49, 558, 836, 852, 1785
BseNI ACTGG 2 cut(s) 227, 1426
BseRI GAGGAG 1 cut(s) 1118
BseXI GCAGC 4 cut(s) 721, 1128, 1696, 1822
BseYI CCCAGC 1 cut(s) 341
BsgI GTGCAG 1 cut(s) 720
BshFI GGCC 4 cut(s) 984, 1213, 1531, 1849
BshNI GGYRCC 3 cut(s) 499, 857, 1403
BsiHKAI GWGCWC 1 cut(s) 1017
BsiSI CCGG 3 cut(s) 8, 497, 1357
BslI CCNNNNNNNGG 4 cut(s) 155, 409, 683, 1845
BsmAI GTCTC 4 cut(s) 846, 1390, 1696, 1721
BsmBI CGTCTC 1 cut(s) 846
BsmI GAATGC 2 cut(s) 158, 790
BsnI GGCC 4 cut(s) 984, 1213, 1531, 1849
Bso31I GGTCTC 1 cut(s) 1696
Bsp1286I GDGCHC 1 cut(s) 1017
Bsp1407I TGTACA 1 cut(s) 162
Bsp143I GATC 5 cut(s) 198, 301, 361, 427, 1168
Bsp19I CCATGG 2 cut(s) 964, 1177
BspACI CCGC 4 cut(s) 156, 746, 1066, 1114
BspANI GGCC 4 cut(s) 984, 1213, 1531, 1849
BspCNI CTCAG 5 cut(s) 48, 559, 835, 851, 1786
BspLI GGNNCC 4 cut(s) 6, 501, 859, 1405
BspMAI CTGCAG 1 cut(s) 311
BspPI GGATC 1 cut(s) 193
BspT107I GGYRCC 3 cut(s) 499, 857, 1403
BspTNI GGTCTC 1 cut(s) 1696
BsrDI GCAATG 1 cut(s) 1227
BsrGI TGTACA 1 cut(s) 162
BsrI ACTGG 2 cut(s) 227, 1426
BssECI CCNNGG 6 cut(s) 594, 964, 1177, 1195, 1408, 1532
BssMI GATC 5 cut(s) 198, 301, 361, 427, 1168
BssNAI GTATAC 1 cut(s) 488
BssSI CACGAG 1 cut(s) 1010
BssT1I CCWWGG 3 cut(s) 594, 964, 1177
Bst1107I GTATAC 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 1010
Bst2UI CCWGG 4 cut(s) 404, 420, 678, 1410
Bst6I CTCTTC 2 cut(s) 395, 555
BstAPI GCANNNNNTGC 1 cut(s) 743
BstAUI TGTACA 1 cut(s) 162
BstC8I GCNNGC 3 cut(s) 158, 1070, 1512
BstDSI CCRYGG 3 cut(s) 964, 1177, 1195
BstEII GGTNACC 1 cut(s) 1181
BstF5I GGATG 6 cut(s) 83, 142, 528, 1543, 1650, 1762
BstH2I RGCGCY 2 cut(s) 1006, 1565
BstHHI GCGC 3 cut(s) 1005, 1074, 1564
BstKTI GATC 5 cut(s) 201, 304, 364, 430, 1171
BstMAI GTCTC 4 cut(s) 846, 1390, 1696, 1721
BstMBI GATC 5 cut(s) 198, 301, 361, 427, 1168
BstMWI GCNNNNNNNGC 3 cut(s) 11, 743, 1667
BstNI CCWGG 4 cut(s) 404, 420, 678, 1410
BstPI GGTNACC 1 cut(s) 1181
BstSCI CCNGG 5 cut(s) 402, 418, 676, 1355, 1408
BstSFI CTRYAG 1 cut(s) 307
BstV1I GCAGC 4 cut(s) 721, 1128, 1696, 1822
BstV2I GAAGAC 2 cut(s) 329, 1301
BstX2I RGATCY 2 cut(s) 198, 427
BstYI RGATCY 2 cut(s) 198, 427
BstZ17I GTATAC 1 cut(s) 488
Bsu36I CCTNAGG 1 cut(s) 436
BsuI GTATCC 1 cut(s) 212
BsuRI GGCC 4 cut(s) 984, 1213, 1531, 1849
BtgI CCRYGG 3 cut(s) 964, 1177, 1195
BtgZI GCGATG 1 cut(s) 865
BtsCI GGATG 6 cut(s) 83, 142, 528, 1543, 1650, 1762
BtsI GCAGTG 3 cut(s) 304, 316, 1002
BtsIMutI CAGTG 4 cut(s) 304, 316, 1002, 1158
Cac8I GCNNGC 3 cut(s) 158, 1070, 1512
CfoI GCGC 3 cut(s) 1005, 1074, 1564
Cfr13I GGNCC 1 cut(s) 674
Csp6I GTAC 4 cut(s) 163, 423, 1104, 1138
CspCI CAANNNNNGTGG 2 cut(s) 1638, 1673
CviQI GTAC 4 cut(s) 163, 423, 1104, 1138
DpnI GATC 5 cut(s) 200, 303, 363, 429, 1170
DpnII GATC 5 cut(s) 198, 301, 361, 427, 1168
EaeI YGGCCR 1 cut(s) 982
Eam1104I CTCTTC 2 cut(s) 395, 555
EarI CTCTTC 2 cut(s) 395, 555
Eco130I CCWWGG 3 cut(s) 594, 964, 1177
Eco31I GGTCTC 1 cut(s) 1696
Eco32I GATATC 1 cut(s) 1276
Eco47I GGWCC 1 cut(s) 674
Eco47III AGCGCT 2 cut(s) 1004, 1563
Eco81I CCTNAGG 1 cut(s) 436
Eco91I GGTNACC 1 cut(s) 1181
EcoO65I GGTNACC 1 cut(s) 1181
EcoRI GAATTC 1 cut(s) 230
EcoRII CCWGG 4 cut(s) 402, 418, 676, 1408
EcoRV GATATC 1 cut(s) 1276
EcoT14I CCWWGG 3 cut(s) 594, 964, 1177
EcoT22I ATGCAT 1 cut(s) 1252
ErhI CCWWGG 3 cut(s) 594, 964, 1177
Esp3I CGTCTC 1 cut(s) 846
FalI AAGNNNNNCTT 2 cut(s) 772, 804
FauI CCCGC 3 cut(s) 149, 739, 1073
FbaI TGATCA 1 cut(s) 1168
FblI GTMKAC 3 cut(s) 487, 960, 1862
Fnu4HI GCNGC 5 cut(s) 735, 1114, 1117, 1685, 1811
FokI GGATG 6 cut(s) 70, 129, 515, 1550, 1657, 1769
Fsp4HI GCNGC 5 cut(s) 735, 1114, 1117, 1685, 1811
GlaI GCGC 3 cut(s) 1004, 1073, 1563
GluI GCNGC 5 cut(s) 735, 1114, 1117, 1685, 1811
GsaI CCCAGC 1 cut(s) 345
HaeII RGCGCY 2 cut(s) 1006, 1565
HaeIII GGCC 4 cut(s) 984, 1213, 1531, 1849
HapII CCGG 3 cut(s) 8, 497, 1357
HhaI GCGC 3 cut(s) 1005, 1074, 1564
Hin6I GCGC 3 cut(s) 1003, 1072, 1562
HinP1I GCGC 3 cut(s) 1003, 1072, 1562
HincII GTYRAC 1 cut(s) 1420
HindII GTYRAC 1 cut(s) 1420
HinfI GANTC 5 cut(s) 334, 1350, 1573, 1604, 1622
HpaII CCGG 3 cut(s) 8, 497, 1357
HphI GGTGA 2 cut(s) 1193, 1815
Hpy188I TCNGA 5 cut(s) 195, 384, 841, 1273, 1627
Hpy188III TCNNGA 7 cut(s) 149, 410, 666, 807, 1286, 1313, 1763
HpyAV CCTTC 6 cut(s) 195, 542, 587, 842, 1747, 1830
HpyCH4IV ACGT 2 cut(s) 60, 1027
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 743, 1667
HpySE526I ACGT 2 cut(s) 60, 1027
HspAI GCGC 3 cut(s) 1003, 1072, 1562
Ksp22I TGATCA 1 cut(s) 1168
Kzo9I GATC 5 cut(s) 198, 301, 361, 427, 1168
LmnI GCTCC 3 cut(s) 10, 182, 1399
Lsp1109I GCAGC 4 cut(s) 721, 1128, 1696, 1822
LweI GCATC 3 cut(s) 623, 1291, 1780
MaeII ACGT 2 cut(s) 60, 1027
MaeIII GTNAC 6 cut(s) 398, 589, 602, 1181, 1439, 1834
MalI GATC 5 cut(s) 200, 303, 363, 429, 1170
MboI GATC 5 cut(s) 198, 301, 361, 427, 1168
MflI RGATCY 2 cut(s) 198, 427
MhlI GDGCHC 1 cut(s) 1017
MlyI GAGTC 3 cut(s) 343, 1344, 1631
MmeI TCCRAC 2 cut(s) 204, 226
Mph1103I ATGCAT 1 cut(s) 1252
MroXI GAANNNNTTC 2 cut(s) 814, 1146
MseI TTAA 1 cut(s) 1772
MslI CAYNNNNRTG 5 cut(s) 309, 505, 1176, 1287, 1675
MspI CCGG 3 cut(s) 8, 497, 1357
MspR9I CCNGG 5 cut(s) 404, 420, 678, 1357, 1410
Mva1269I GAATGC 2 cut(s) 158, 790
MvaI CCWGG 4 cut(s) 404, 420, 678, 1410
MwoI GCNNNNNNNGC 3 cut(s) 11, 743, 1667
NciI CCSGG 1 cut(s) 1357
NcoI CCATGG 2 cut(s) 964, 1177
NdeII GATC 5 cut(s) 198, 301, 361, 427, 1168
NlaIV GGNNCC 4 cut(s) 6, 501, 859, 1405
NmeAIII GCCGAG 2 cut(s) 1010, 1557
NmuCI GTSAC 2 cut(s) 1181, 1834
NsiI ATGCAT 1 cut(s) 1252
OliI CACNNNNGTG 1 cut(s) 309
PcsI WCGNNNNNNNCGW 2 cut(s) 888, 1117
PctI GAATGC 2 cut(s) 158, 790
PdmI GAANNNNTTC 2 cut(s) 814, 1146
PfeI GAWTC 2 cut(s) 1573, 1604
PflMI CCANNNNNTGG 1 cut(s) 683
PfoI TCCNGGA 2 cut(s) 676, 1355
PkrI GCNGC 5 cut(s) 736, 1115, 1118, 1686, 1812
PleI GAGTC 3 cut(s) 342, 1344, 1630
PpsI GAGTC 3 cut(s) 342, 1344, 1630
Psp6I CCWGG 4 cut(s) 402, 418, 676, 1408
PspEI GGTNACC 1 cut(s) 1181
PspFI CCCAGC 1 cut(s) 341
PspGI CCWGG 4 cut(s) 402, 418, 676, 1408
PspN4I GGNNCC 4 cut(s) 6, 501, 859, 1405
PspPI GGNCC 1 cut(s) 674
PstI CTGCAG 1 cut(s) 311
PsuI RGATCY 2 cut(s) 198, 427
RsaI GTAC 4 cut(s) 164, 424, 1105, 1139
RsaNI GTAC 4 cut(s) 163, 423, 1104, 1138
RseI CAYNNNNRTG 5 cut(s) 309, 505, 1176, 1287, 1675
SaqAI TTAA 1 cut(s) 1772
SatI GCNGC 5 cut(s) 735, 1114, 1117, 1685, 1811
Sau3AI GATC 5 cut(s) 198, 301, 361, 427, 1168
Sau96I GGNCC 1 cut(s) 674
SchI GAGTC 3 cut(s) 343, 1344, 1631
ScrFI CCNGG 5 cut(s) 404, 420, 678, 1357, 1410
SduI GDGCHC 1 cut(s) 1017
SfaNI GCATC 3 cut(s) 623, 1291, 1780
SfcI CTRYAG 1 cut(s) 307
SinI GGWCC 1 cut(s) 674
SmiMI CAYNNNNRTG 5 cut(s) 309, 505, 1176, 1287, 1675
SmlI CTYRAG 3 cut(s) 323, 688, 805
SmoI CTYRAG 3 cut(s) 323, 688, 805
SsiI CCGC 4 cut(s) 156, 746, 1066, 1114
SspI AATATT 1 cut(s) 115
StyD4I CCNGG 5 cut(s) 402, 418, 676, 1355, 1408
StyI CCWWGG 3 cut(s) 594, 964, 1177
TaiI ACGT 2 cut(s) 63, 1030
TaqI TCGA 2 cut(s) 234, 645
TatI WGTACW 2 cut(s) 162, 1103
TauI GCSGC 1 cut(s) 1116
TfiI GAWTC 2 cut(s) 1573, 1604
Tru1I TTAA 1 cut(s) 1772
Tru9I TTAA 1 cut(s) 1772
TscAI CASTG 4 cut(s) 311, 316, 1002, 1165
TseFI GTSAC 2 cut(s) 1181, 1834
TseI GCWGC 4 cut(s) 734, 1116, 1684, 1810
Tsp45I GTSAC 2 cut(s) 1181, 1834
TspGWI ACGGA 1 cut(s) 1822
TspRI CASTG 4 cut(s) 311, 316, 1002, 1165
Van91I CCANNNNNTGG 1 cut(s) 683
VpaK11BI GGWCC 1 cut(s) 674
XapI RAATTY 5 cut(s) 230, 253, 653, 1360, 1768
XmiI GTMKAC 3 cut(s) 487, 960, 1862
XmnI GAANNNNTTC 2 cut(s) 814, 1146
Zsp2I ATGCAT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.