Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

50360029 .. 50361357

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG341100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCTCCGGTGGCTTTGTTTATGTTCTCTGTTCTCAGTCATCTTCTAGTTCTTCACTGCATTGAGGGGAAGCAGATTTGTCCATCCTACTACTGTAATGAAATAGTAGGCTATATTCATTTCCCTTTCAAAAATATTTCACATCCTCCTGAATGCGGCCTGTACACAGTCAATTGCTCCAACCCTTCTAGTCCGAAGATCCAACTCAGAAAGGGCGGATACTGGCATGACTTCGACAGCATTTCTCAAACAAATTCAGTTCATGTCAACGACAAAGAGCTACTGAAGCCCTTGCCAATTGATTACTGCAATGATGAAATTCTTGATGATTTGAGTCTTCCAAGCCCTTCTCCACTCTTTGATCTGTTGTTCACCAACAATCTGACCCTGTTCAAATGCAACACCTCCCTGAAACCTCATGCAGATCTTACCTTTGGCTGCCTCAATGCTAAGCATACTTACTATACGTTATACAATAAAAGTACACCAAGTCCACCACCACCATGTTCAATCACTCAGATTCCCACACTTTCCAATCAATCTACTCTTTTACCATTGACTACTGTGTTCTCGCTTCAAGTGCAAGTAACCAGAGATTGTTACCAATGTTACGAAAAAAGAAAAGGCAGATGCCTGGTTGTCAACGGAAAATTTAAATGTTCCAAAGGAGGAAAAACCTTGGGATTGAAGCTTGGATTAGGTCTAGGTATTGGAATTGGAGTTGCTGCACTTCTTGTAGGAGGCTTGTCTATTCTGCTGGGAAAAAAACAAAAGCGTGTTTCTTTAAACTTCCTTTCAAGGAACTCAAACTCAGACCTAGAAGGGGACAGCGCCTACTTTGGTGTTTCGGTCTTTACCTACAGTGAACTTGACGAAGCCACTAATCATTTTGATAGCAAAAAGGAACTTGGAGATGGAGGTTTTGGAACTGTATACCATGGTAAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

316

Amino Acids

34.79

Weight (kDa)

8.31

Isoelectric Point (pI)

36.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	933
AciI	CCGC	2 cut(s)	156, 216
AclWI	GGATC	1 cut(s)	193
AcsI	RAATTY	3 cut(s)	253, 318, 650
AcuI	CTGAAG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	164, 484
AfiI	CCNNNNNNNGG	2 cut(s)	155, 823
AgsI	TTSAA	6 cut(s)	130, 394, 510, 578, 688, 798
AjnI	CCWGG	1 cut(s)	633
AluBI	AGCT	2 cut(s)	280, 691
AluI	AGCT	2 cut(s)	280, 691
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	1 cut(s)	157
ApeKI	GCWGC	2 cut(s)	438, 725
ApoI	RAATTY	3 cut(s)	253, 318, 650
AspLEI	GCGC	1 cut(s)	833
AsuHPI	GGTGA	1 cut(s)	364
BbsI	GAAGAC	1 cut(s)	329
BbvI	GCAGC	2 cut(s)	425, 712
BccI	CCATC	2 cut(s)	91, 908
BciT130I	CCWGG	1 cut(s)	635
BciVI	GTATCC	1 cut(s)	212
BfaI	CTAG	4 cut(s)	47, 189, 704, 818
BfmI	CTRYAG	1 cut(s)	859
BfoI	RGCGCY	1 cut(s)	834
BfuI	GTATCC	1 cut(s)	212
BglII	AGATCT	1 cut(s)	424
BisI	GCNGC	3 cut(s)	157, 439, 726
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	3 cut(s)	158, 440, 727
Bme1390I	CCNGG	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	635
BmsI	GCATC	1 cut(s)	620
BpiI	GAAGAC	1 cut(s)	329
Bpu1102I	GCTNAGC	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	678, 937
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	155, 823
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	316
BseBI	CCWGG	1 cut(s)	635
BseDI	CCNNGG	2 cut(s)	678, 937
BseGI	GGATG	2 cut(s)	83, 142
BseLI	CCNNNNNNNGG	2 cut(s)	155, 823
BseMI	GCAATG	1 cut(s)	316
BseMII	CTCAG	4 cut(s)	49, 220, 530, 825
BseNI	ACTGG	1 cut(s)	227
BseXI	GCAGC	2 cut(s)	425, 712
BseYI	CCCAGC	1 cut(s)	757
BsgI	GTGCAG	1 cut(s)	711
BshFI	GGCC	1 cut(s)	159
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	155, 823
BsmFI	GGGAC	1 cut(s)	839
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	1 cut(s)	159
Bsp1407I	TGTACA	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	198, 361, 424
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	937
BspACI	CCGC	2 cut(s)	156, 216
BspANI	GGCC	1 cut(s)	159
BspCNI	CTCAG	4 cut(s)	48, 219, 529, 824
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	162
BsrI	ACTGG	1 cut(s)	227
BssECI	CCNNGG	2 cut(s)	678, 937
BssMI	GATC	3 cut(s)	198, 361, 424
BssNAI	GTATAC	1 cut(s)	934
BssT1I	CCWWGG	2 cut(s)	678, 937
Bst1107I	GTATAC	1 cut(s)	934
Bst2UI	CCWGG	1 cut(s)	635
Bst4CI	ACNGT	5 cut(s)	95, 169, 565, 863, 931
BstAUI	TGTACA	1 cut(s)	162
BstDEI	CTNAG	5 cut(s)	35, 206, 450, 516, 811
BstDSI	CCRYGG	1 cut(s)	937
BstF5I	GGATG	2 cut(s)	83, 142
BstH2I	RGCGCY	1 cut(s)	834
BstHHI	GCGC	1 cut(s)	833
BstKTI	GATC	3 cut(s)	201, 364, 427
BstMBI	GATC	3 cut(s)	198, 361, 424
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 286, 580
BstNI	CCWGG	1 cut(s)	635
BstSCI	CCNGG	1 cut(s)	633
BstSFI	CTRYAG	1 cut(s)	859
BstV1I	GCAGC	2 cut(s)	425, 712
BstV2I	GAAGAC	1 cut(s)	329
BstX2I	RGATCY	2 cut(s)	198, 424
BstYI	RGATCY	2 cut(s)	198, 424
BstZ17I	GTATAC	1 cut(s)	934
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	937
BtsCI	GGATG	2 cut(s)	83, 142
BtsI	GCAGTG	1 cut(s)	55
BtsIMutI	CAGTG	2 cut(s)	55, 868
CfoI	GCGC	1 cut(s)	833
Csp6I	GTAC	2 cut(s)	163, 483
CviAII	CATG	5 cut(s)	227, 263, 419, 504, 938
CviQI	GTAC	2 cut(s)	163, 483
DdeI	CTNAG	5 cut(s)	35, 206, 450, 516, 811
DpnI	GATC	3 cut(s)	200, 363, 426
DpnII	GATC	3 cut(s)	198, 361, 424
DraI	TTTAAA	2 cut(s)	655, 786
EciI	GGCGGA	1 cut(s)	231
Eco130I	CCWWGG	2 cut(s)	678, 937
Eco57I	CTGAAG	1 cut(s)	305
EcoRII	CCWGG	1 cut(s)	633
EcoT14I	CCWWGG	2 cut(s)	678, 937
ErhI	CCWWGG	2 cut(s)	678, 937
FaeI	CATG	5 cut(s)	230, 266, 422, 507, 941
FaqI	GGGAC	1 cut(s)	839
FatI	CATG	5 cut(s)	226, 262, 418, 503, 937
FblI	GTMKAC	1 cut(s)	933
Fnu4HI	GCNGC	3 cut(s)	157, 439, 726
FokI	GGATG	2 cut(s)	70, 129
Fsp4HI	GCNGC	3 cut(s)	157, 439, 726
FspBI	CTAG	4 cut(s)	47, 189, 704, 818
GlaI	GCGC	1 cut(s)	832
GluI	GCNGC	3 cut(s)	157, 439, 726
GsaI	CCCAGC	1 cut(s)	761
HaeII	RGCGCY	1 cut(s)	834
HaeIII	GGCC	1 cut(s)	159
HapII	CCGG	1 cut(s)	8
HhaI	GCGC	1 cut(s)	833
Hin1II	CATG	5 cut(s)	230, 266, 422, 507, 941
Hin6I	GCGC	1 cut(s)	831
HinP1I	GCGC	1 cut(s)	831
HincII	GTYRAC	2 cut(s)	268, 643
HindII	GTYRAC	2 cut(s)	268, 643
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	2 cut(s)	334, 520
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	364
Hpy166II	GTNNAC	8 cut(s)	165, 268, 372, 485, 494, 643, 866, 934
Hpy188I	TCNGA	5 cut(s)	195, 209, 384, 519, 814
Hpy188III	TCNNGA	2 cut(s)	149, 323
Hpy8I	GTNNAC	8 cut(s)	165, 268, 372, 485, 494, 643, 866, 934
HpyAV	CCTTC	3 cut(s)	195, 357, 815
HpyCH4III	ACNGT	5 cut(s)	95, 169, 565, 863, 931
HpyCH4IV	ACGT	1 cut(s)	467
HpyCH4V	TGCA	6 cut(s)	60, 309, 399, 422, 583, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 286, 580
HpyF3I	CTNAG	5 cut(s)	35, 206, 450, 516, 811
HpySE526I	ACGT	1 cut(s)	467
Hsp92II	CATG	5 cut(s)	230, 266, 422, 507, 941
HspAI	GCGC	1 cut(s)	831
Kzo9I	GATC	3 cut(s)	198, 361, 424
LmnI	GCTCC	2 cut(s)	10, 182
Lsp1109I	GCAGC	2 cut(s)	425, 712
LweI	GCATC	1 cut(s)	620
MaeI	CTAG	4 cut(s)	47, 189, 704, 818
MaeII	ACGT	1 cut(s)	467
MaeIII	GTNAC	3 cut(s)	586, 599, 608
MalI	GATC	3 cut(s)	200, 363, 426
MboI	GATC	3 cut(s)	198, 361, 424
MboII	GAAGA	4 cut(s)	35, 44, 208, 329
MfeI	CAATTG	2 cut(s)	172, 297
MflI	RGATCY	2 cut(s)	198, 424
MluCI	AATT	6 cut(s)	172, 253, 297, 318, 650, 714
MlyI	GAGTC	1 cut(s)	343
MmeI	TCCRAC	2 cut(s)	204, 226
MnlI	CCTC	8 cut(s)	58, 156, 415, 426, 452, 662, 734, 911
MseI	TTAA	2 cut(s)	654, 785
MslI	CAYNNNNRTG	1 cut(s)	502
MspI	CCGG	1 cut(s)	8
MspR9I	CCNGG	1 cut(s)	635
MunI	CAATTG	2 cut(s)	172, 297
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	635
MwoI	GCNNNNNNNGC	3 cut(s)	11, 286, 580
NcoI	CCATGG	1 cut(s)	937
NdeII	GATC	3 cut(s)	198, 361, 424
NlaIII	CATG	5 cut(s)	230, 266, 422, 507, 941
NlaIV	GGNNCC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	520
PkrI	GCNGC	3 cut(s)	158, 440, 727
PleI	GAGTC	1 cut(s)	342
PpsI	GAGTC	1 cut(s)	342
Psp6I	CCWGG	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	757
PspGI	CCWGG	1 cut(s)	633
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	198, 424
RsaI	GTAC	2 cut(s)	164, 484
RsaNI	GTAC	2 cut(s)	163, 483
RseI	CAYNNNNRTG	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	654, 785
SatI	GCNGC	3 cut(s)	157, 439, 726
Sau3AI	GATC	3 cut(s)	198, 361, 424
SchI	GAGTC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	635
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	1 cut(s)	859
SmiI	ATTTAAAT	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	502
Sse9I	AATT	6 cut(s)	172, 253, 297, 318, 650, 714
SsiI	CCGC	2 cut(s)	156, 216
SspI	AATATT	1 cut(s)	136
SspMI	CTAG	4 cut(s)	47, 189, 704, 818
StyD4I	CCNGG	1 cut(s)	633
StyI	CCWWGG	2 cut(s)	678, 937
SwaI	ATTTAAAT	1 cut(s)	655
TaaI	ACNGT	5 cut(s)	95, 169, 565, 863, 931
TaiI	ACGT	1 cut(s)	470
TaqI	TCGA	1 cut(s)	234
TaqII	GACCGA	1 cut(s)	838
TasI	AATT	6 cut(s)	172, 253, 297, 318, 650, 714
TatI	WGTACW	2 cut(s)	162, 482
TauI	GCSGC	1 cut(s)	159
TfiI	GAWTC	1 cut(s)	520
Tru1I	TTAA	2 cut(s)	654, 785
Tru9I	TTAA	2 cut(s)	654, 785
TscAI	CASTG	2 cut(s)	62, 868
TseI	GCWGC	2 cut(s)	438, 725
TspDTI	ATGAA	4 cut(s)	107, 114, 251, 330
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	62, 868
XapI	RAATTY	3 cut(s)	253, 318, 650
XmiI	GTMKAC	1 cut(s)	933
XspI	CTAG	4 cut(s)	47, 189, 704, 818

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.