Rh4BG340800

Wall-associated receptor kinase C-terminal

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
50346853 .. 50348707
1855 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG340800.1

Sequence Viewer

Length: 1329 bp
ATGTTTATCTATGCCACTTCAATCTGCTCTGCTTTAGCTAACAACAGCTTTTGCTATGTTGCAGGAAATCATTTGGGTTTGGAGCTAGGACTCGGTATTGGACTTGGAGGTGCAGCACTCCTAGGAGTCCTTGCAGCATGCTTGTTTCTTTTCAGGCGTTACAAAAAAAAGCTCGCTTCTTCAAACGTACTCTCCAGGAACATTTCTTCTCAGCCCTACTCAAAATCAGACCTAGAAGGGGGCAATGCCTACTTTGGTGTTTCGGTCTTCACCTACGAGGAACTTGAAGAAGCCACTAATCATTTTGACAGTGAAAAAGAGCTTGGAGATGGAGGTTTTGGAACTGTCTACTATGGCAAACTCAAAGATGGCCGGGAAGTTGCAGTCAAGCGTTTGTACGAGCACAATTACAAACGTGTGGAACAGTTTATGAATGAAATTGAAATTCTCACCCGTCTGCGCCACAAAAACTTGGTCTCCCTCTATGGTTGCACTTCACGCCGCAGCCGTGAACTCATCCTTGTCTATGAATACATTCCCAATGGCACTGTTGCTGATCATCTCCACGGCGACCTAGCAGAACGTGGTTTACTCACGTGGCCTATTCGTATGAGCATTGCCATAGAAACTGCCAATGCACTGTCTTACCTCCATGTTTCTGATATTGTGCATCGTGATGTGAAGTCTACCAACATTCTCCTTGACAACAATTTCTGTGTTAAAGTTGCAGATTTTGGGCTCTCGCGGCTTTTTCCCCTCGATGTCACTCATGTCTCTACTGCTCCACAAGGGACCCCTGGTTATGTTGACCCAGAGTATCACCAGTGTTACCAGCTTACTAGTAAGAGTGATGTTTATAGTTTTGGGGTTGTCCTCATTGAGCTGATATCATCTCTGCCAGCAGTTGATATAACTAGGCATAGGCATGAGATCAATTTGTCTAACATAGCCATAAACAAGATTCAAAGAGGTTTATACAGTGAGCTGGTAGATTCATGTCTGGGGTTTGAGTCAGATCATGAAGTTAAAAGGATGACAATTGCAGTGGCAGAGTTGGCTTTCCAATGTTTGCAGCAGGACAATGATGCAAGGCCTACCATGTCTGAGGTTTTGGAAACTTTGCAGATAATTGAAAGTGGAAAAGATGTTCCAGAGAATTTGAAGGAGGACTTTGGTGATGTTGAGATGAGAAAGAGTATACAGCCACCACCTTCACCAGAATGTGATGAGCTTCAGTTGTTGAAGAACATGAGGCCACCATTTTCACCTATTTCCGTGACCCAAAACTGGCCTAGCACTAGGTCCAATACACCTAATGCCAGTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

442

Amino Acids

49.36

Weight (kDa)

5.59

Isoelectric Point (pI)

50.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 103 - 372 6.7e-50 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 105 - 374 4.9e-49 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 348, 686, 1198
AccII CGCG 1 cut(s) 745
AciI CCGC 2 cut(s) 502, 745
AcoI YGGCCR 1 cut(s) 370
AcsI RAATTY 2 cut(s) 444, 1156
AcuI CTGAAG 1 cut(s) 1217
AcvI CACGTG 1 cut(s) 597
AfaI GTAC 2 cut(s) 189, 398
AfiI CCNNNNNNNGG 2 cut(s) 238, 1287
AflIII ACRYGT 1 cut(s) 415
AgsI TTSAA 8 cut(s) 21, 183, 287, 443, 965, 1133, 1162, 1243
AhlI ACTAGT 1 cut(s) 839
AjnI CCWGG 2 cut(s) 194, 796
AjuI GAANNNNNNNTTGG 2 cut(s) 306, 338
AloI GAACNNNNNNTCC 2 cut(s) 1131, 1163
AluBI AGCT 9 cut(s) 38, 48, 85, 172, 322, 835, 883, 985, 1231
AluI AGCT 9 cut(s) 38, 48, 85, 172, 322, 835, 883, 985, 1231
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 481, 778
AlwNI CAGNNNCTG 1 cut(s) 1326
AoxI GGCC 5 cut(s) 370, 599, 1091, 1253, 1289
ApeKI GCWGC 4 cut(s) 113, 134, 504, 1072
ApoI RAATTY 2 cut(s) 444, 1156
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
Asp700I GAANNNNTTC 1 cut(s) 534
AspA2I CCTAGG 1 cut(s) 121
AspLEI GCGC 1 cut(s) 462
AspS9I GGNCC 2 cut(s) 792, 1302
AsuC2I CCSGG 1 cut(s) 374
AsuHPI GGTGA 6 cut(s) 262, 442, 812, 1187, 1206, 1257
AvaII GGWCC 2 cut(s) 792, 1302
AvrII CCTAGG 1 cut(s) 121
BanII GRGCYC 1 cut(s) 741
BbrPI CACGTG 1 cut(s) 597
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 405
BbvI GCAGC 4 cut(s) 125, 146, 516, 1084
BccI CCATC 2 cut(s) 323, 362
BceAI ACGGC 2 cut(s) 492, 583
BciT130I CCWGG 2 cut(s) 196, 798
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 374
BcoDI GTCTC 2 cut(s) 481, 778
BcuI ACTAGT 1 cut(s) 839
BfaI CTAG 8 cut(s) 86, 122, 233, 575, 840, 915, 1293, 1299
BisI GCNGC 6 cut(s) 114, 135, 502, 505, 746, 1073
BlnI CCTAGG 1 cut(s) 121
BlsI GCNGC 6 cut(s) 115, 136, 503, 506, 747, 1074
Bme1390I CCNGG 3 cut(s) 196, 374, 798
Bme18I GGWCC 2 cut(s) 792, 1302
BmgT120I GGNCC 2 cut(s) 792, 1302
BmiI GGNNCC 2 cut(s) 793, 794
BmrFI CCNGG 3 cut(s) 196, 374, 798
BmsI GCATC 2 cut(s) 679, 1075
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 374
BsaAI YACGTR 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 481
BsaJI CCNNGG 3 cut(s) 121, 565, 796
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 238, 1287
Bse1I ACTGG 3 cut(s) 823, 1292, 1320
Bse3DI GCAATG 2 cut(s) 250, 615
BseBI CCWGG 2 cut(s) 196, 798
BseDI CCNNGG 3 cut(s) 121, 565, 796
BseGI GGATG 2 cut(s) 516, 1038
BseLI CCNNNNNNNGG 2 cut(s) 238, 1287
BseMI GCAATG 2 cut(s) 250, 615
BseMII CTCAG 2 cut(s) 224, 1095
BseNI ACTGG 3 cut(s) 823, 1292, 1320
BseXI GCAGC 4 cut(s) 125, 146, 516, 1084
BsgI GTGCAG 1 cut(s) 132
Bsh1236I CGCG 1 cut(s) 745
BshFI GGCC 5 cut(s) 372, 601, 1093, 1255, 1291
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 1 cut(s) 373
BslFI GGGAC 1 cut(s) 805
BslI CCNNNNNNNGG 2 cut(s) 238, 1287
BsmAI GTCTC 2 cut(s) 481, 778
BsmFI GGGAC 1 cut(s) 805
BsnI GGCC 5 cut(s) 372, 601, 1093, 1255, 1291
Bso31I GGTCTC 1 cut(s) 481
Bsp1286I GDGCHC 2 cut(s) 405, 741
Bsp143I GATC 3 cut(s) 556, 930, 1015
BspACI CCGC 2 cut(s) 502, 745
BspANI GGCC 5 cut(s) 372, 601, 1093, 1255, 1291
BspCNI CTCAG 2 cut(s) 223, 1096
BspFNI CGCG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 1018
BspLI GGNNCC 2 cut(s) 793, 794
BspTNI GGTCTC 1 cut(s) 481
BsrDI GCAATG 2 cut(s) 250, 615
BsrI ACTGG 3 cut(s) 823, 1292, 1320
BssECI CCNNGG 3 cut(s) 121, 565, 796
BssMI GATC 3 cut(s) 556, 930, 1015
BssNAI GTATAC 1 cut(s) 1199
BssT1I CCWWGG 1 cut(s) 121
Bst1107I GTATAC 1 cut(s) 1199
Bst2UI CCWGG 2 cut(s) 196, 798
Bst4CI ACNGT 6 cut(s) 311, 346, 426, 550, 642, 980
BstBAI YACGTR 1 cut(s) 597
BstC8I GCNNGC 3 cut(s) 139, 174, 900
BstDEI CTNAG 2 cut(s) 210, 1104
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 516, 1038
BstFNI CGCG 1 cut(s) 745
BstHHI GCGC 1 cut(s) 462
BstKTI GATC 3 cut(s) 559, 933, 1018
BstMAI GTCTC 2 cut(s) 481, 778
BstMBI GATC 3 cut(s) 556, 930, 1015
BstMWI GCNNNNNNNGC 3 cut(s) 498, 745, 1055
BstNI CCWGG 2 cut(s) 196, 798
BstNSI RCATGY 1 cut(s) 141
BstSCI CCNGG 3 cut(s) 194, 372, 796
BstUI CGCG 1 cut(s) 745
BstV1I GCAGC 4 cut(s) 125, 146, 516, 1084
BstV2I GAAGAC 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 1199
BsuRI GGCC 5 cut(s) 372, 601, 1093, 1255, 1291
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 2 cut(s) 516, 1038
BtsI GCAGTG 1 cut(s) 1050
BtsIMutI CAGTG 6 cut(s) 316, 546, 638, 830, 985, 1050
Cac8I GCNNGC 3 cut(s) 139, 174, 900
CaiI CAGNNNCTG 1 cut(s) 1326
CciI TCATGA 1 cut(s) 1018
CfoI GCGC 1 cut(s) 462
Cfr13I GGNCC 2 cut(s) 792, 1302
Csp6I GTAC 2 cut(s) 188, 397
CspCI CAANNNNNGTGG 2 cut(s) 1026, 1061
CviAII CATG 8 cut(s) 138, 653, 770, 926, 996, 1019, 1099, 1249
CviQI GTAC 2 cut(s) 188, 397
DdeI CTNAG 2 cut(s) 210, 1104
DpnI GATC 3 cut(s) 558, 932, 1017
DpnII GATC 3 cut(s) 556, 930, 1015
EaeI YGGCCR 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 121
Eco147I AGGCCT 1 cut(s) 1093
Eco24I GRGCYC 1 cut(s) 741
Eco31I GGTCTC 1 cut(s) 481
Eco32I GATATC 1 cut(s) 888
Eco47I GGWCC 2 cut(s) 792, 1302
Eco57I CTGAAG 1 cut(s) 1217
Eco72I CACGTG 1 cut(s) 597
EcoO109I RGGNCCY 1 cut(s) 792
EcoRII CCWGG 2 cut(s) 194, 796
EcoRV GATATC 1 cut(s) 888
EcoT14I CCWWGG 1 cut(s) 121
EcoT38I GRGCYC 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 121
FaeI CATG 8 cut(s) 141, 656, 773, 929, 999, 1022, 1102, 1252
FalI AAGNNNNNCTT 2 cut(s) 1154, 1186
FaqI GGGAC 1 cut(s) 805
FatI CATG 8 cut(s) 137, 652, 769, 925, 995, 1018, 1098, 1248
FbaI TGATCA 1 cut(s) 556
FblI GTMKAC 3 cut(s) 348, 686, 1198
Fnu4HI GCNGC 6 cut(s) 114, 135, 502, 505, 746, 1073
FokI GGATG 2 cut(s) 503, 1045
FriOI GRGCYC 1 cut(s) 741
Fsp4HI GCNGC 6 cut(s) 114, 135, 502, 505, 746, 1073
FspBI CTAG 8 cut(s) 86, 122, 233, 575, 840, 915, 1293, 1299
GlaI GCGC 1 cut(s) 461
GluI GCNGC 6 cut(s) 114, 135, 502, 505, 746, 1073
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 5 cut(s) 372, 601, 1093, 1255, 1291
HapII CCGG 1 cut(s) 373
HhaI GCGC 1 cut(s) 462
Hin1II CATG 8 cut(s) 141, 656, 773, 929, 999, 1022, 1102, 1252
Hin6I GCGC 1 cut(s) 460
HinP1I GCGC 1 cut(s) 460
HincII GTYRAC 1 cut(s) 808
HindII GTYRAC 1 cut(s) 808
HinfI GANTC 5 cut(s) 90, 126, 961, 992, 1010
HpaII CCGG 1 cut(s) 373
HphI GGTGA 6 cut(s) 262, 442, 812, 1187, 1206, 1257
Hpy166II GTNNAC 6 cut(s) 349, 512, 590, 687, 808, 1199
Hpy188I TCNGA 4 cut(s) 229, 661, 1015, 1105
Hpy188III TCNNGA 3 cut(s) 674, 1019, 1151
Hpy8I GTNNAC 6 cut(s) 349, 512, 590, 687, 808, 1199
HpyAV CCTTC 3 cut(s) 230, 1156, 1221
HpyCH4III ACNGT 6 cut(s) 311, 346, 426, 550, 642, 980
HpyCH4IV ACGT 4 cut(s) 186, 415, 583, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 745, 1055
HpyF3I CTNAG 2 cut(s) 210, 1104
HpySE526I ACGT 4 cut(s) 186, 415, 583, 596
Hsp92II CATG 8 cut(s) 141, 656, 773, 929, 999, 1022, 1102, 1252
HspAI GCGC 1 cut(s) 460
KflI GGGWCCC 1 cut(s) 792
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 3 cut(s) 556, 930, 1015
LmnI GCTCC 2 cut(s) 82, 787
Lsp1109I GCAGC 4 cut(s) 125, 146, 516, 1084
LweI GCATC 2 cut(s) 679, 1075
MaeI CTAG 8 cut(s) 86, 122, 233, 575, 840, 915, 1293, 1299
MaeII ACGT 4 cut(s) 186, 415, 583, 596
MaeIII GTNAC 4 cut(s) 158, 763, 827, 1276
MalI GATC 3 cut(s) 558, 932, 1017
MboI GATC 3 cut(s) 556, 930, 1015
MboII GAAGA 5 cut(s) 171, 198, 259, 299, 1255
MfeI CAATTG 1 cut(s) 1038
MhlI GDGCHC 2 cut(s) 405, 741
MluCI AATT 8 cut(s) 406, 438, 444, 709, 934, 1038, 1128, 1156
MlyI GAGTC 3 cut(s) 84, 135, 1019
MroXI GAANNNNTTC 1 cut(s) 534
MseI TTAA 2 cut(s) 720, 1026
MslI CAYNNNNRTG 3 cut(s) 675, 924, 1219
MspI CCGG 1 cut(s) 373
MspR9I CCNGG 3 cut(s) 196, 374, 798
MunI CAATTG 1 cut(s) 1038
MvaI CCWGG 2 cut(s) 196, 798
MvnI CGCG 1 cut(s) 745
MwoI GCNNNNNNNGC 3 cut(s) 498, 745, 1055
NciI CCSGG 1 cut(s) 374
NdeII GATC 3 cut(s) 556, 930, 1015
NlaIII CATG 8 cut(s) 141, 656, 773, 929, 999, 1022, 1102, 1252
NlaIV GGNNCC 2 cut(s) 793, 794
NmuCI GTSAC 2 cut(s) 763, 1276
NspI RCATGY 1 cut(s) 141
PaeI GCATGC 1 cut(s) 141
PagI TCATGA 1 cut(s) 1018
PceI AGGCCT 1 cut(s) 1093
PcsI WCGNNNNNNNCGW 1 cut(s) 505
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 961, 992
PfoI TCCNGGA 1 cut(s) 194
PkrI GCNGC 6 cut(s) 115, 136, 503, 506, 747, 1074
PleI GAGTC 3 cut(s) 84, 134, 1018
PmaCI CACGTG 1 cut(s) 597
PmlI CACGTG 1 cut(s) 597
PpsI GAGTC 3 cut(s) 84, 134, 1018
Ppu21I YACGTR 1 cut(s) 597
PpuMI RGGWCCY 1 cut(s) 792
Psp5II RGGWCCY 1 cut(s) 792
Psp6I CCWGG 2 cut(s) 194, 796
PspCI CACGTG 1 cut(s) 597
PspGI CCWGG 2 cut(s) 194, 796
PspN4I GGNNCC 2 cut(s) 793, 794
PspPI GGNCC 2 cut(s) 792, 1302
PspPPI RGGWCCY 1 cut(s) 792
PsrI GAACNNNNNNTAC 2 cut(s) 573, 605
PstNI CAGNNNCTG 1 cut(s) 1326
RsaI GTAC 2 cut(s) 189, 398
RsaNI GTAC 2 cut(s) 188, 397
RseI CAYNNNNRTG 3 cut(s) 675, 924, 1219
SaqAI TTAA 2 cut(s) 720, 1026
SatI GCNGC 6 cut(s) 114, 135, 502, 505, 746, 1073
Sau3AI GATC 3 cut(s) 556, 930, 1015
Sau96I GGNCC 2 cut(s) 792, 1302
SchI GAGTC 3 cut(s) 84, 135, 1019
ScrFI CCNGG 3 cut(s) 196, 374, 798
SduI GDGCHC 2 cut(s) 405, 741
SfaNI GCATC 2 cut(s) 679, 1075
SinI GGWCC 2 cut(s) 792, 1302
SmiMI CAYNNNNRTG 3 cut(s) 675, 924, 1219
SpeI ACTAGT 1 cut(s) 839
SphI GCATGC 1 cut(s) 141
Sse9I AATT 8 cut(s) 406, 438, 444, 709, 934, 1038, 1128, 1156
SseBI AGGCCT 1 cut(s) 1093
SsiI CCGC 2 cut(s) 502, 745
SspMI CTAG 8 cut(s) 86, 122, 233, 575, 840, 915, 1293, 1299
StuI AGGCCT 1 cut(s) 1093
StyD4I CCNGG 3 cut(s) 194, 372, 796
StyI CCWWGG 1 cut(s) 121
TaaI ACNGT 6 cut(s) 311, 346, 426, 550, 642, 980
TaiI ACGT 4 cut(s) 189, 418, 586, 599
TaqI TCGA 1 cut(s) 759
TaqII GACCGA 1 cut(s) 253
TasI AATT 8 cut(s) 406, 438, 444, 709, 934, 1038, 1128, 1156
TauI GCSGC 2 cut(s) 504, 748
TfiI GAWTC 2 cut(s) 961, 992
Tru1I TTAA 2 cut(s) 720, 1026
Tru9I TTAA 2 cut(s) 720, 1026
TscAI CASTG 6 cut(s) 316, 553, 645, 830, 985, 1050
TseFI GTSAC 2 cut(s) 763, 1276
TseI GCWGC 4 cut(s) 113, 134, 504, 1072
Tsp45I GTSAC 2 cut(s) 763, 1276
TspDTI ATGAA 5 cut(s) 446, 450, 543, 984, 1035
TspGWI ACGGA 1 cut(s) 1264
TspRI CASTG 6 cut(s) 316, 553, 645, 830, 985, 1050
VpaK11BI GGWCC 2 cut(s) 792, 1302
XapI RAATTY 2 cut(s) 444, 1156
XceI RCATGY 1 cut(s) 141
XmaJI CCTAGG 1 cut(s) 121
XmiI GTMKAC 3 cut(s) 348, 686, 1198
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 8 cut(s) 86, 122, 233, 575, 840, 915, 1293, 1299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.