Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

64370460 .. 64371477

Gene Structure 1018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG333900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTCTTTACTCCGCTGAGAGTTGTCCACCCGACATCTGTAATGAGAGAGTGGGTCAAATCTTCTTCCCCTTTAAAAGCATAACAGAGAGTCGTCCTGAATGCGGATTGTTCACTGTCAACTGTTCTGACCGCCTTAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATGATTCCATTAATTTCCGTTTTTATCAATGACACGCGGCTTCAGGAGCGCATAGAGCGCTTAAAAGGAGATAGCTGTGATGATGATGTTTTCAATGATTTAGGTCTTCCAGGCCCTTCTCCCATCCTCCATACATCCACAAACAACCTTACCCTGTTCAGATGCAACAACACCCTGAACAAAACTCCTTACAAGGATCCTAACTATGCTTGCACGAGTGTAAATTATATTTACTATACTGTATCAAATGATAGTTTAAATTGCTCAACCATTCAGATTCCCATACTTCCACCATCTCCTTCCAATGAATATAATCCTTCTGCATTGACTGCTGAATTCCCCCTTCAAGTGTATTTTACCGAAGAATGTGATCAGTGTGCTCATAAAGGAGGTAGATGCTTGGATGTCAATGGAGAATTTAAATGTGGCCCCCATCATAAAGATAAATGCCGGTTTGAGAAGGGACAATTCAAATGTACCAAAGCAGGAAATCATCATTTGGGTTTGAAGCTAGGACTCGGTAAGATAGATCTCTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

258

Amino Acids

29.02

Weight (kDa)

5.97

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	271
AciI	CCGC	4 cut(s)	60, 150, 178, 271
AclWI	GGATC	3 cut(s)	187, 425, 438
AcsI	RAATTY	2 cut(s)	569, 650
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	712
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgsI	TTSAA	6 cut(s)	224, 328, 581, 706, 742, 772
AjnI	CCWGG	1 cut(s)	343
AluBI	AGCT	2 cut(s)	309, 745
AluI	AGCT	2 cut(s)	309, 745
Alw21I	GWGCWC	1 cut(s)	616
AlwI	GGATC	3 cut(s)	187, 425, 438
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	2 cut(s)	346, 661
ApoI	RAATTY	2 cut(s)	569, 650
AseI	ATTAAT	1 cut(s)	245
AspLEI	GCGC	2 cut(s)	285, 294
AspS9I	GGNCC	2 cut(s)	347, 662
BamHI	GGATCC	1 cut(s)	430
BauI	CACGAG	1 cut(s)	448
BbsI	GAAGAC	2 cut(s)	25, 332
Bbv12I	GWGCWC	1 cut(s)	616
BccI	CCATC	4 cut(s)	200, 365, 535, 675
BciT130I	CCWGG	1 cut(s)	345
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	604
BfaI	CTAG	1 cut(s)	746
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	763
BisI	GCNGC	1 cut(s)	272
BlsI	GCNGC	1 cut(s)	273
Bme1390I	CCNGG	1 cut(s)	345
BmgT120I	GGNCC	2 cut(s)	347, 662
BmiI	GGNNCC	2 cut(s)	432, 664
BmrFI	CCNGG	1 cut(s)	345
BmsI	GCATC	2 cut(s)	386, 620
BpiI	GAAGAC	2 cut(s)	25, 332
BsaJI	CCNNGG	1 cut(s)	9
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	684
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	9
BseGI	GGATG	3 cut(s)	357, 368, 643
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	348, 663
BsiHKAI	GWGCWC	1 cut(s)	616
BsiSI	CCGG	1 cut(s)	685
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	348, 663
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	4 cut(s)	192, 430, 604, 763
BspACI	CCGC	4 cut(s)	60, 150, 178, 271
BspANI	GGCC	2 cut(s)	348, 663
BspCNI	CTCAG	1 cut(s)	55
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	432, 664
BspPI	GGATC	3 cut(s)	187, 425, 438
BsrFI	RCCGGY	1 cut(s)	684
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	1 cut(s)	684
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	4 cut(s)	192, 430, 604, 763
BssSI	CACGAG	1 cut(s)	448
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	1 cut(s)	345
Bst4CI	ACNGT	4 cut(s)	10, 163, 170, 475
Bst6I	CTCTTC	1 cut(s)	773
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	357, 368, 643
BstFNI	CGCG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	285, 294
BstKTI	GATC	4 cut(s)	195, 433, 607, 766
BstMBI	GATC	4 cut(s)	192, 430, 604, 763
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 563
BstNI	CCWGG	1 cut(s)	345
BstSCI	CCNGG	1 cut(s)	343
BstUI	CGCG	1 cut(s)	271
BstV2I	GAAGAC	2 cut(s)	25, 332
BstX2I	RGATCY	3 cut(s)	192, 430, 763
BstYI	RGATCY	3 cut(s)	192, 430, 763
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	348, 663
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	357, 368, 643
BtsIMutI	CAGTG	2 cut(s)	159, 614
Cac8I	GCNNGC	1 cut(s)	445
CfoI	GCGC	2 cut(s)	285, 294
Cfr10I	RCCGGY	1 cut(s)	684
Cfr13I	GGNCC	2 cut(s)	347, 662
Csp6I	GTAC	1 cut(s)	711
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	7 cut(s)	5, 14, 274, 309, 348, 663, 745
CviKI_1	RGCY	7 cut(s)	5, 14, 274, 309, 348, 663, 745
CviQI	GTAC	1 cut(s)	711
DdeI	CTNAG	1 cut(s)	63
DpnI	GATC	4 cut(s)	194, 432, 606, 765
DpnII	GATC	4 cut(s)	192, 430, 604, 763
DraI	TTTAAA	3 cut(s)	121, 492, 655
Eam1104I	CTCTTC	1 cut(s)	773
EarI	CTCTTC	1 cut(s)	773
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	343
FaeI	CATG	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	604
Fnu4HI	GCNGC	1 cut(s)	272
FokI	GGATG	3 cut(s)	344, 355, 650
Fsp4HI	GCNGC	1 cut(s)	272
FspBI	CTAG	1 cut(s)	746
GlaI	GCGC	2 cut(s)	284, 293
GluI	GCNGC	1 cut(s)	272
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	2 cut(s)	348, 663
HapII	CCGG	1 cut(s)	685
HhaI	GCGC	2 cut(s)	285, 294
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	2 cut(s)	283, 292
HinP1I	GCGC	2 cut(s)	283, 292
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	136, 238, 511, 750
HpaII	CCGG	1 cut(s)	685
Hpy166II	GTNNAC	3 cut(s)	74, 159, 166
Hpy188I	TCNGA	4 cut(s)	175, 189, 395, 510
Hpy188III	TCNNGA	2 cut(s)	143, 278
Hpy8I	GTNNAC	3 cut(s)	74, 159, 166
HpyAV	CCTTC	5 cut(s)	360, 543, 561, 587, 688
HpyCH4III	ACNGT	4 cut(s)	10, 163, 170, 475
HpyCH4V	TGCA	3 cut(s)	399, 447, 557
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 563
HpyF3I	CTNAG	1 cut(s)	63
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	2 cut(s)	283, 292
Ksp22I	TGATCA	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	192, 430, 604, 763
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	9 cut(s)	156, 202, 263, 330, 357, 401, 422, 698, 705
LweI	GCATC	2 cut(s)	386, 620
MaeI	CTAG	1 cut(s)	746
MalI	GATC	4 cut(s)	194, 432, 606, 765
MboI	GATC	4 cut(s)	192, 430, 604, 763
MboII	GAAGA	8 cut(s)	25, 35, 100, 103, 202, 332, 608, 760
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	3 cut(s)	192, 430, 763
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	8 cut(s)	224, 246, 457, 493, 569, 650, 701, 772
MlyI	GAGTC	2 cut(s)	145, 744
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	3 cut(s)	203, 371, 617
MseI	TTAA	7 cut(s)	120, 183, 245, 296, 491, 654, 775
MspA1I	CMGCKG	1 cut(s)	62
MspI	CCGG	1 cut(s)	685
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	345
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 563
NdeII	GATC	4 cut(s)	192, 430, 604, 763
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	432, 664
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	238, 511
PkrI	GCNGC	1 cut(s)	273
PleI	GAGTC	2 cut(s)	144, 744
PpsI	GAGTC	2 cut(s)	144, 744
PshBI	ATTAAT	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	343
PspGI	CCWGG	1 cut(s)	343
PspN4I	GGNNCC	2 cut(s)	432, 664
PspPI	GGNCC	2 cut(s)	347, 662
PsuI	RGATCY	3 cut(s)	192, 430, 763
RsaI	GTAC	1 cut(s)	712
RsaNI	GTAC	1 cut(s)	711
SaqAI	TTAA	7 cut(s)	120, 183, 245, 296, 491, 654, 775
SatI	GCNGC	1 cut(s)	272
Sau3AI	GATC	4 cut(s)	192, 430, 604, 763
Sau96I	GGNCC	2 cut(s)	347, 662
SchI	GAGTC	2 cut(s)	145, 744
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	1 cut(s)	616
SetI	ASST	5 cut(s)	311, 340, 384, 628, 747
SfaNI	GCATC	2 cut(s)	386, 620
SmiI	ATTTAAAT	1 cut(s)	655
Sse9I	AATT	8 cut(s)	224, 246, 457, 493, 569, 650, 701, 772
SsiI	CCGC	4 cut(s)	60, 150, 178, 271
SspMI	CTAG	1 cut(s)	746
StyD4I	CCNGG	1 cut(s)	343
SwaI	ATTTAAAT	1 cut(s)	655
TaaI	ACNGT	4 cut(s)	10, 163, 170, 475
TasI	AATT	8 cut(s)	224, 246, 457, 493, 569, 650, 701, 772
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	238, 511
Tru1I	TTAA	7 cut(s)	120, 183, 245, 296, 491, 654, 775
Tru9I	TTAA	7 cut(s)	120, 183, 245, 296, 491, 654, 775
TscAI	CASTG	2 cut(s)	166, 614
TspDTI	ATGAA	1 cut(s)	555
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	166, 614
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	2 cut(s)	569, 650
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
XspI	CTAG	1 cut(s)	746

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.