Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

55837142 .. 55954987

Gene Structure 117846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG336000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGCTACCGTGGCTGTGTTTATTTTCTCTGTCTTCACTCATCTTCTGCTTGTTTACTCGGCTGAGAGTTGTCCACCCTCCTTCTGTAATGAGAGAGTGGGTCATATCTTCTTCCCCTTTAAAAGCATAACAGAGAGTCGTCCTGAATGCGGATTGTTCACTGTCAACTGTTCTGACCGCCTTAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATGATTCCATTAATTTCCGTTTTTATCAATGACACGCGGCTTCAGGAGCGCATAGATATGCGCTTAAAAGGAGATAGCTGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTTCTCCCATCCTCCATACATCCACAACCAACCTTACCCTGTTCAGATGCAACAAGACCCAGGAGAAACCTCCTTACCACAAGGATCCTAACTATGCTTGCACGAGTGTAAATTATATTTACTATACTGTATCAAATGATAGTTTAAATTGCTCAACCATTCAGATTCCCATACTTCCACCATCTCCTTCCAATGAATATAATCCTTCTGCATTGACTGCTGAATTCCCCCTTCAAGTGTATTTTACCGAAGAATGTGATCAGTGTGCTCATAAAGGAGGTAGCTGCTTGGATGTCAATGGAGAATTTAAATGTGGCCCCCATCATAAATATAAATGCCGGTTTGAGAAGGGACAATTCAAATGTACCAAAGCAGGTAAATGCATCGAAATTTATGTGCATAAAAGTAGATGCTTCCTGCACTTACATCACCGGTTGTCTCGCTCTGTCGTGCCATACTCCAATTCCTTTCCTCCAGAGATATTCCTGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

282

Amino Acids

32.17

Weight (kDa)

7.5

Isoelectric Point (pI)

55.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	716
AccII	CGCG	1 cut(s)	271
AciI	CCGC	3 cut(s)	150, 178, 271
AclWI	GGATC	3 cut(s)	187, 431, 444
AcsI	RAATTY	3 cut(s)	575, 656, 741
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	783
AgsI	TTSAA	4 cut(s)	224, 331, 587, 712
AjnI	CCWGG	2 cut(s)	346, 411
AluBI	AGCT	2 cut(s)	312, 636
AluI	AGCT	2 cut(s)	312, 636
Alw21I	GWGCWC	1 cut(s)	622
Alw26I	GTCTC	1 cut(s)	795
AlwI	GGATC	3 cut(s)	187, 431, 444
AoxI	GGCC	2 cut(s)	349, 667
ApeKI	GCWGC	1 cut(s)	636
ApoI	RAATTY	3 cut(s)	575, 656, 741
AseI	ATTAAT	1 cut(s)	245
AsiGI	ACCGGT	1 cut(s)	783
AspLEI	GCGC	2 cut(s)	285, 297
AspS9I	GGNCC	2 cut(s)	350, 668
AsuHPI	GGTGA	1 cut(s)	773
BamHI	GGATCC	1 cut(s)	436
BauI	CACGAG	1 cut(s)	454
BbsI	GAAGAC	2 cut(s)	25, 335
Bbv12I	GWGCWC	1 cut(s)	622
BbvI	GCAGC	1 cut(s)	623
BccI	CCATC	4 cut(s)	200, 368, 541, 681
BciT130I	CCWGG	2 cut(s)	348, 413
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	610
BcoDI	GTCTC	1 cut(s)	795
BfuAI	ACCTGC	1 cut(s)	716
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	2 cut(s)	272, 637
BlsI	GCNGC	2 cut(s)	273, 638
Bme1390I	CCNGG	2 cut(s)	348, 413
BmgT120I	GGNCC	2 cut(s)	350, 668
BmiI	GGNNCC	2 cut(s)	438, 670
BmrFI	CCNGG	2 cut(s)	348, 413
BmsI	GCATC	3 cut(s)	389, 744, 752
BpiI	GAAGAC	2 cut(s)	25, 335
BpmI	CTGGAG	1 cut(s)	810
BsaJI	CCNNGG	2 cut(s)	9, 411
BsaWI	WCCGGW	1 cut(s)	783
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	2 cut(s)	690, 783
Bse1I	ACTGG	1 cut(s)	221
BseBI	CCWGG	2 cut(s)	348, 413
BseDI	CCNNGG	2 cut(s)	9, 411
BseGI	GGATG	3 cut(s)	360, 371, 649
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMII	CTCAG	2 cut(s)	54, 830
BseNI	ACTGG	1 cut(s)	221
BseXI	GCAGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	271
BshFI	GGCC	2 cut(s)	351, 669
BshTI	ACCGGT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	622
BsiSI	CCGG	2 cut(s)	691, 784
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	1 cut(s)	795
BsmFI	GGGAC	1 cut(s)	717
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	351, 669
Bsp1286I	GDGCHC	1 cut(s)	622
Bsp143I	GATC	3 cut(s)	192, 436, 610
BspACI	CCGC	3 cut(s)	150, 178, 271
BspANI	GGCC	2 cut(s)	351, 669
BspCNI	CTCAG	2 cut(s)	55, 831
BspFNI	CGCG	1 cut(s)	271
BspLI	GGNNCC	2 cut(s)	438, 670
BspMI	ACCTGC	1 cut(s)	716
BspPI	GGATC	3 cut(s)	187, 431, 444
BsrFI	RCCGGY	2 cut(s)	690, 783
BsrI	ACTGG	1 cut(s)	221
BssAI	RCCGGY	2 cut(s)	690, 783
BssECI	CCNNGG	2 cut(s)	9, 411
BssMI	GATC	3 cut(s)	192, 436, 610
BssSI	CACGAG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	454
Bst2UI	CCWGG	2 cut(s)	348, 413
Bst4CI	ACNGT	4 cut(s)	10, 163, 170, 481
BstAPI	GCANNNNNTGC	1 cut(s)	569
BstC8I	GCNNGC	1 cut(s)	451
BstDEI	CTNAG	2 cut(s)	63, 839
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	3 cut(s)	360, 371, 649
BstFNI	CGCG	1 cut(s)	271
BstHHI	GCGC	2 cut(s)	285, 297
BstKTI	GATC	3 cut(s)	195, 439, 613
BstMAI	GTCTC	1 cut(s)	795
BstMBI	GATC	3 cut(s)	192, 436, 610
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
BstNI	CCWGG	2 cut(s)	348, 413
BstSCI	CCNGG	2 cut(s)	346, 411
BstUI	CGCG	1 cut(s)	271
BstV1I	GCAGC	1 cut(s)	623
BstV2I	GAAGAC	2 cut(s)	25, 335
BstX2I	RGATCY	2 cut(s)	192, 436
BstYI	RGATCY	2 cut(s)	192, 436
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	351, 669
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	360, 371, 649
BtsIMutI	CAGTG	2 cut(s)	159, 620
BveI	ACCTGC	1 cut(s)	716
Cac8I	GCNNGC	1 cut(s)	451
CfoI	GCGC	2 cut(s)	285, 297
Cfr10I	RCCGGY	2 cut(s)	690, 783
Cfr13I	GGNCC	2 cut(s)	350, 668
Csp6I	GTAC	1 cut(s)	717
CspAI	ACCGGT	1 cut(s)	783
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	8 cut(s)	5, 14, 62, 274, 312, 351, 636, 669
CviKI_1	RGCY	8 cut(s)	5, 14, 62, 274, 312, 351, 636, 669
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	2 cut(s)	63, 839
DpnI	GATC	3 cut(s)	194, 438, 612
DpnII	GATC	3 cut(s)	192, 436, 610
DraI	TTTAAA	3 cut(s)	121, 498, 661
Eco57I	CTGAAG	1 cut(s)	260
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	346, 411
EcoT22I	ATGCAT	1 cut(s)	737
FaeI	CATG	1 cut(s)	238
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	1 cut(s)	234
FbaI	TGATCA	1 cut(s)	610
Fnu4HI	GCNGC	2 cut(s)	272, 637
FokI	GGATG	3 cut(s)	347, 358, 656
Fsp4HI	GCNGC	2 cut(s)	272, 637
GlaI	GCGC	2 cut(s)	284, 296
GluI	GCNGC	2 cut(s)	272, 637
GsuI	CTGGAG	1 cut(s)	810
HaeIII	GGCC	2 cut(s)	351, 669
HapII	CCGG	2 cut(s)	691, 784
HhaI	GCGC	2 cut(s)	285, 297
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	2 cut(s)	283, 295
HinP1I	GCGC	2 cut(s)	283, 295
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	3 cut(s)	136, 238, 517
HpaII	CCGG	2 cut(s)	691, 784
HphI	GGTGA	1 cut(s)	773
Hpy166II	GTNNAC	4 cut(s)	55, 74, 159, 166
Hpy188I	TCNGA	4 cut(s)	175, 189, 398, 516
Hpy188III	TCNNGA	4 cut(s)	143, 278, 827, 838
Hpy8I	GTNNAC	4 cut(s)	55, 74, 159, 166
HpyAV	CCTTC	6 cut(s)	91, 363, 549, 567, 593, 694
HpyCH4III	ACNGT	4 cut(s)	10, 163, 170, 481
HpyCH4V	TGCA	6 cut(s)	402, 453, 563, 735, 751, 772
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
HpyF3I	CTNAG	2 cut(s)	63, 839
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	2 cut(s)	283, 295
Ksp22I	TGATCA	1 cut(s)	610
Kzo9I	GATC	3 cut(s)	192, 436, 610
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	1 cut(s)	623
LweI	GCATC	3 cut(s)	389, 744, 752
MalI	GATC	3 cut(s)	194, 438, 612
MboI	GATC	3 cut(s)	192, 436, 610
MboII	GAAGA	7 cut(s)	25, 35, 100, 103, 202, 335, 614
MfeI	CAATTG	1 cut(s)	224
MflI	RGATCY	2 cut(s)	192, 436
MhlI	GDGCHC	1 cut(s)	622
MluCI	AATT	9 cut(s)	224, 246, 463, 499, 575, 656, 707, 741, 814
MlyI	GAGTC	1 cut(s)	145
MmeI	TCCRAC	1 cut(s)	220
MnlI	CCTC	6 cut(s)	88, 203, 374, 432, 623, 834
Mph1103I	ATGCAT	1 cut(s)	737
MseI	TTAA	7 cut(s)	120, 183, 245, 299, 338, 497, 660
MslI	CAYNNNNRTG	1 cut(s)	290
MspI	CCGG	2 cut(s)	691, 784
MspR9I	CCNGG	2 cut(s)	348, 413
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	2 cut(s)	348, 413
MvnI	CGCG	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	11, 280, 569
NdeII	GATC	3 cut(s)	192, 436, 610
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	2 cut(s)	438, 670
NmeAIII	GCCGAG	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	737
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	238, 517
PinAI	ACCGGT	1 cut(s)	783
PkrI	GCNGC	2 cut(s)	273, 638
PleI	GAGTC	1 cut(s)	144
PpsI	GAGTC	1 cut(s)	144
PshBI	ATTAAT	1 cut(s)	245
Psp6I	CCWGG	2 cut(s)	346, 411
PspGI	CCWGG	2 cut(s)	346, 411
PspN4I	GGNNCC	2 cut(s)	438, 670
PspPI	GGNCC	2 cut(s)	350, 668
PsuI	RGATCY	2 cut(s)	192, 436
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	7 cut(s)	120, 183, 245, 299, 338, 497, 660
SatI	GCNGC	2 cut(s)	272, 637
Sau3AI	GATC	3 cut(s)	192, 436, 610
Sau96I	GGNCC	2 cut(s)	350, 668
SchI	GAGTC	1 cut(s)	145
ScrFI	CCNGG	2 cut(s)	348, 413
SduI	GDGCHC	1 cut(s)	622
SetI	ASST	6 cut(s)	314, 387, 424, 634, 638, 730
SfaNI	GCATC	3 cut(s)	389, 744, 752
SmiI	ATTTAAAT	1 cut(s)	661
SmiMI	CAYNNNNRTG	1 cut(s)	290
Sse9I	AATT	9 cut(s)	224, 246, 463, 499, 575, 656, 707, 741, 814
SsiI	CCGC	3 cut(s)	150, 178, 271
StyD4I	CCNGG	2 cut(s)	346, 411
SwaI	ATTTAAAT	1 cut(s)	661
TaaI	ACNGT	4 cut(s)	10, 163, 170, 481
TaqI	TCGA	1 cut(s)	738
TasI	AATT	9 cut(s)	224, 246, 463, 499, 575, 656, 707, 741, 814
TauI	GCSGC	1 cut(s)	274
TfiI	GAWTC	2 cut(s)	238, 517
Tru1I	TTAA	7 cut(s)	120, 183, 245, 299, 338, 497, 660
Tru9I	TTAA	7 cut(s)	120, 183, 245, 299, 338, 497, 660
TscAI	CASTG	2 cut(s)	166, 620
TseI	GCWGC	1 cut(s)	636
TspDTI	ATGAA	1 cut(s)	561
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	2 cut(s)	166, 620
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	3 cut(s)	575, 656, 741
XcmI	CCANNNNNNNNNTGG	1 cut(s)	203
Zsp2I	ATGCAT	1 cut(s)	737

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.