Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8505535.1

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2314

Gene Structure 2314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8505535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1537 bp

atggctaccgtggctgttttcattttctctgtcttcactcattttctggttctttactccgccgagtgttgtccagacttcttctgtaatcccatagtaggccagatctccttcccctttaaaaataaaacgcaggattctcctgaatgcggatattacactgttgattgttctgaccatcaccgtccgaagatccaactcaaagcgggaggatactggtttcattttgaaagcatcactcaatcagataccgttgtaatcaatgacagcaagcttcaggagcgtatagagcgcttaaaagatacctgtgatgatgatgttttcagagatttaagtcttcccaactctcctcctatcgtccatatacacacacacaaccttaccctgttcagatgcaacaacaccctggacaaaactccttacaaggatcctaactttgtttgcaggagtgtaaaatatatttactatactgtatcacataatagtttagattgctcagccattcagatccccataattccacgttctccttccaatttctataatcattctacattgaccgccaaattctaccttcaagtgcaatattccaacgaatgtgttcagtgctatactactagaggtaaatgcttggacgagaatggacaattcaaatgtggccgcccacaacaagataaatgctgggatgagaagggaaatttcaattgttccttcacagaagaaggtaaatgccaggatgagaaggaggaaggcaaatgtgccaaagcaggaaaacatctggctgtgaagctaggacttggtattggacttggaggtgcagcactccttgcagcatgcttgtttgttttcaggcgttacaaaaaaaagctcgcttcttcaaacgtactttccaggaacatttcttctcagccctactcaaaatcagacctagaaggtggcaatgcctactttggtgtttcggtcttcacctatgaggaacttgaagaagccactaatcattttgacagtgaaaaagagcttggagatggaggttttggaactgtctactatggcaaactcaaagatgggcgggaagttgcagtcaagcgtttatatgagcacaattacaagcgtgttgaacagtttatgaatgaaattgaaattctcacccgtctgcgccacaaaaacttggtctccctctatggttgcacttcacgccgcagccgcgaacttatcctcgtctatgaatacattcccaatggcactgttgctgatcatctgcatggtgacttagcagaacgtggtccacttacgtggcctattcgtatgagcattgccatagaaactgccgatgcactgtcttacctccatgtttctgatattgtgcatcgtgatgtgaagactaccaacattctccttgacaacaatttctgtgtaaaagttgcagattttgggctctcgcggctttttccccttgatgtcactcatgtttctactgcgccacaagggactcctggttatgttgacccagagtatcaccagtgttaccagctaacta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

512

Amino Acids

58.16

Weight (kDa)

6.44

Isoelectric Point (pI)

40.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1044
AccII	CGCG	2 cut(s)	1206, 1441
AciI	CCGC	9 cut(s)	60, 150, 206, 561, 661, 1069, 1198, 1204, 1441
AclWI	GGATC	4 cut(s)	187, 422, 435, 502
AcoI	YGGCCR	1 cut(s)	658
AcsI	RAATTY	3 cut(s)	566, 697, 1140
AcuI	CTGAAG	1 cut(s)	260
AfaI	GTAC	1 cut(s)	885
AfeI	AGCGCT	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	98, 149
AgsI	TTSAA	8 cut(s)	230, 578, 652, 703, 879, 983, 1118, 1139
AjnI	CCWGG	4 cut(s)	405, 732, 890, 1492
AjuI	GAANNNNNNNTTGG	2 cut(s)	1002, 1034
AleI	CACNNNNGTG	1 cut(s)	1291
AluBI	AGCT	5 cut(s)	274, 790, 868, 1018, 1531
AluI	AGCT	5 cut(s)	274, 790, 868, 1018, 1531
Alw21I	GWGCWC	1 cut(s)	1101
Alw26I	GTCTC	1 cut(s)	1177
AlwI	GGATC	4 cut(s)	187, 422, 435, 502
Aor51HI	AGCGCT	1 cut(s)	293
AoxI	GGCC	3 cut(s)	100, 658, 1295
ApeKI	GCWGC	3 cut(s)	818, 830, 1200
ApoI	RAATTY	3 cut(s)	566, 697, 1140
ArsI	GACNNNNNNTTYG	2 cut(s)	1155, 1187
Asp700I	GAANNNNTTC	2 cut(s)	600, 1230
AspLEI	GCGC	3 cut(s)	294, 1158, 1480
AspS9I	GGNCC	1 cut(s)	1283
AsuHPI	GGTGA	5 cut(s)	173, 958, 1138, 1277, 1508
AvaII	GGWCC	1 cut(s)	1283
BaeI	ACNNNNGTAYC	2 cut(s)	240, 273
BamHI	GGATCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	1437
BbsI	GAAGAC	4 cut(s)	25, 329, 955, 1385
Bbv12I	GWGCWC	1 cut(s)	1101
BbvI	GCAGC	3 cut(s)	830, 842, 1212
BccI	CCATC	3 cut(s)	186, 1019, 1058
BciT130I	CCWGG	4 cut(s)	407, 734, 892, 1494
BciVI	GTATCC	1 cut(s)	206
BclI	TGATCA	1 cut(s)	1252
BcoDI	GTCTC	1 cut(s)	1177
BfaI	CTAG	3 cut(s)	618, 791, 929
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	206
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	7 cut(s)	661, 819, 831, 1198, 1201, 1204, 1442
BlpI	GCTNAGC	1 cut(s)	496
BlsI	GCNGC	7 cut(s)	662, 820, 832, 1199, 1202, 1205, 1443
Bme1390I	CCNGG	4 cut(s)	407, 734, 892, 1494
Bme18I	GGWCC	1 cut(s)	1283
BmgT120I	GGNCC	1 cut(s)	1283
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	4 cut(s)	407, 734, 892, 1494
BmsI	GCATC	4 cut(s)	243, 383, 1321, 1375
BpiI	GAAGAC	4 cut(s)	25, 329, 955, 1385
Bpu1102I	GCTNAGC	1 cut(s)	496
BsaAI	YACGTR	1 cut(s)	1293
BsaI	GGTCTC	1 cut(s)	1177
BsaJI	CCNNGG	2 cut(s)	9, 405
BsaXI	ACNNNNNCTCC	2 cut(s)	1157, 1187
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 149
Bse1I	ACTGG	2 cut(s)	221, 1519
Bse3DI	GCAATG	2 cut(s)	946, 1311
BseBI	CCWGG	4 cut(s)	407, 734, 892, 1494
BseDI	CCNNGG	2 cut(s)	9, 405
BseGI	GGATG	2 cut(s)	691, 742
BseLI	CCNNNNNNNGG	2 cut(s)	98, 149
BseMI	GCAATG	2 cut(s)	946, 1311
BseMII	CTCAG	2 cut(s)	510, 920
BseNI	ACTGG	2 cut(s)	221, 1519
BseRI	GAGGAG	1 cut(s)	339
BseXI	GCAGC	3 cut(s)	830, 842, 1212
BseYI	CCCAGC	1 cut(s)	681
BsgI	GTGCAG	1 cut(s)	837
Bsh1236I	CGCG	2 cut(s)	1206, 1441
BshFI	GGCC	3 cut(s)	102, 660, 1297
BsiHKAI	GWGCWC	1 cut(s)	1101
BslFI	GGGAC	1 cut(s)	1501
BslI	CCNNNNNNNGG	2 cut(s)	98, 149
BsmAI	GTCTC	1 cut(s)	1177
BsmFI	GGGAC	1 cut(s)	1501
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	3 cut(s)	102, 660, 1297
Bso31I	GGTCTC	1 cut(s)	1177
Bsp1286I	GDGCHC	2 cut(s)	1101, 1437
Bsp143I	GATC	5 cut(s)	105, 192, 427, 507, 1252
Bsp1720I	GCTNAGC	1 cut(s)	496
BspACI	CCGC	9 cut(s)	60, 150, 206, 561, 661, 1069, 1198, 1204, 1441
BspANI	GGCC	3 cut(s)	102, 660, 1297
BspCNI	CTCAG	2 cut(s)	509, 919
BspFNI	CGCG	2 cut(s)	1206, 1441
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	4 cut(s)	187, 422, 435, 502
BspTNI	GGTCTC	1 cut(s)	1177
BsrDI	GCAATG	2 cut(s)	946, 1311
BsrI	ACTGG	2 cut(s)	221, 1519
BssECI	CCNNGG	2 cut(s)	9, 405
BssMI	GATC	5 cut(s)	105, 192, 427, 507, 1252
Bst2UI	CCWGG	4 cut(s)	407, 734, 892, 1494
BstAPI	GCANNNNNTGC	1 cut(s)	827
BstBAI	YACGTR	1 cut(s)	1293
BstC8I	GCNNGC	3 cut(s)	272, 835, 870
BstDEI	CTNAG	3 cut(s)	496, 906, 1270
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	691, 742
BstFNI	CGCG	2 cut(s)	1206, 1441
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	3 cut(s)	294, 1158, 1480
BstKTI	GATC	5 cut(s)	108, 195, 430, 510, 1255
BstMAI	GTCTC	1 cut(s)	1177
BstMBI	GATC	5 cut(s)	105, 192, 427, 507, 1252
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 280, 289, 827, 1194, 1203, 1441
BstNI	CCWGG	4 cut(s)	407, 734, 892, 1494
BstNSI	RCATGY	1 cut(s)	837
BstSCI	CCNGG	4 cut(s)	405, 732, 890, 1492
BstUI	CGCG	2 cut(s)	1206, 1441
BstV1I	GCAGC	3 cut(s)	830, 842, 1212
BstV2I	GAAGAC	4 cut(s)	25, 329, 955, 1385
BstX2I	RGATCY	4 cut(s)	105, 192, 427, 507
BstXI	CCANNNNNNTGG	1 cut(s)	1293
BstYI	RGATCY	4 cut(s)	105, 192, 427, 507
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	3 cut(s)	102, 660, 1297
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	2 cut(s)	691, 742
BtsIMutI	CAGTG	6 cut(s)	159, 611, 1012, 1242, 1334, 1526
Cac8I	GCNNGC	3 cut(s)	272, 835, 870
CfoI	GCGC	3 cut(s)	294, 1158, 1480
Cfr13I	GGNCC	1 cut(s)	1283
Csp6I	GTAC	1 cut(s)	884
CviAII	CATG	4 cut(s)	834, 1262, 1349, 1466
CviQI	GTAC	1 cut(s)	884
DdeI	CTNAG	3 cut(s)	496, 906, 1270
DpnI	GATC	5 cut(s)	107, 194, 429, 509, 1254
DpnII	GATC	5 cut(s)	105, 192, 427, 507, 1252
DraI	TTTAAA	1 cut(s)	121
EaeI	YGGCCR	1 cut(s)	658
EciI	GGCGGA	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	1437
Eco31I	GGTCTC	1 cut(s)	1177
Eco47I	GGWCC	1 cut(s)	1283
Eco47III	AGCGCT	1 cut(s)	293
Eco57I	CTGAAG	1 cut(s)	260
EcoRII	CCWGG	4 cut(s)	405, 732, 890, 1492
EcoT38I	GRGCYC	1 cut(s)	1437
FaeI	CATG	4 cut(s)	837, 1265, 1352, 1469
FaqI	GGGAC	1 cut(s)	1501
FatI	CATG	4 cut(s)	833, 1261, 1348, 1465
FauI	CCCGC	2 cut(s)	199, 1062
FbaI	TGATCA	1 cut(s)	1252
FblI	GTMKAC	1 cut(s)	1044
Fnu4HI	GCNGC	7 cut(s)	661, 819, 831, 1198, 1201, 1204, 1442
FokI	GGATG	2 cut(s)	698, 749
FriOI	GRGCYC	1 cut(s)	1437
Fsp4HI	GCNGC	7 cut(s)	661, 819, 831, 1198, 1201, 1204, 1442
FspBI	CTAG	3 cut(s)	618, 791, 929
GlaI	GCGC	3 cut(s)	293, 1157, 1479
GluI	GCNGC	7 cut(s)	661, 819, 831, 1198, 1201, 1204, 1442
GsaI	CCCAGC	1 cut(s)	685
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	3 cut(s)	102, 660, 1297
HhaI	GCGC	3 cut(s)	294, 1158, 1480
Hin1II	CATG	4 cut(s)	837, 1265, 1352, 1469
Hin6I	GCGC	3 cut(s)	292, 1156, 1478
HinP1I	GCGC	3 cut(s)	292, 1156, 1478
HincII	GTYRAC	1 cut(s)	1504
HindII	GTYRAC	1 cut(s)	1504
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	137, 1489
HphI	GGTGA	5 cut(s)	173, 958, 1138, 1277, 1508
Hpy166II	GTNNAC	3 cut(s)	1045, 1286, 1504
Hpy188I	TCNGA	8 cut(s)	175, 189, 247, 326, 392, 507, 925, 1357
Hpy188III	TCNNGA	4 cut(s)	74, 143, 278, 1370
Hpy8I	GTNNAC	3 cut(s)	1045, 1286, 1504
HpyAV	CCTTC	9 cut(s)	121, 540, 584, 685, 716, 721, 736, 743, 926
HpyCH4IV	ACGT	4 cut(s)	523, 882, 1279, 1292
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 280, 289, 827, 1194, 1203, 1441
HpyF3I	CTNAG	3 cut(s)	496, 906, 1270
HpySE526I	ACGT	4 cut(s)	523, 882, 1279, 1292
Hsp92II	CATG	4 cut(s)	837, 1265, 1352, 1469
HspAI	GCGC	3 cut(s)	292, 1156, 1478
Ksp22I	TGATCA	1 cut(s)	1252
Kzo9I	GATC	5 cut(s)	105, 192, 427, 507, 1252
LmnI	GCTCC	1 cut(s)	280
Lsp1109I	GCAGC	3 cut(s)	830, 842, 1212
LweI	GCATC	4 cut(s)	243, 383, 1321, 1375
MaeI	CTAG	3 cut(s)	618, 791, 929
MaeII	ACGT	4 cut(s)	523, 882, 1279, 1292
MaeIII	GTNAC	4 cut(s)	854, 1265, 1459, 1523
MalI	GATC	5 cut(s)	107, 194, 429, 509, 1254
MboI	GATC	5 cut(s)	105, 192, 427, 507, 1252
MfeI	CAATTG	1 cut(s)	703
MflI	RGATCY	4 cut(s)	105, 192, 427, 507
MhlI	GDGCHC	2 cut(s)	1101, 1437
MlyI	GAGTC	1 cut(s)	1483
MmeI	TCCRAC	2 cut(s)	220, 615
MroXI	GAANNNNTTC	2 cut(s)	600, 1230
MseI	TTAA	3 cut(s)	120, 296, 332
MslI	CAYNNNNRTG	3 cut(s)	1260, 1291, 1371
MspR9I	CCNGG	4 cut(s)	407, 734, 892, 1494
MunI	CAATTG	1 cut(s)	703
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	4 cut(s)	407, 734, 892, 1494
MvnI	CGCG	2 cut(s)	1206, 1441
MwoI	GCNNNNNNNGC	7 cut(s)	11, 280, 289, 827, 1194, 1203, 1441
NdeII	GATC	5 cut(s)	105, 192, 427, 507, 1252
NlaIII	CATG	4 cut(s)	837, 1265, 1352, 1469
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	88
NmuCI	GTSAC	2 cut(s)	1265, 1459
NspI	RCATGY	1 cut(s)	837
OliI	CACNNNNGTG	1 cut(s)	1291
PaeI	GCATGC	1 cut(s)	837
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	2 cut(s)	600, 1230
PfeI	GAWTC	1 cut(s)	137
PfoI	TCCNGGA	1 cut(s)	890
PkrI	GCNGC	7 cut(s)	662, 820, 832, 1199, 1202, 1205, 1443
PleI	GAGTC	1 cut(s)	1483
PpsI	GAGTC	1 cut(s)	1483
Ppu21I	YACGTR	1 cut(s)	1293
Psp6I	CCWGG	4 cut(s)	405, 732, 890, 1492
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	4 cut(s)	405, 732, 890, 1492
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	1 cut(s)	1283
PsuI	RGATCY	4 cut(s)	105, 192, 427, 507
RsaI	GTAC	1 cut(s)	885
RsaNI	GTAC	1 cut(s)	884
RseI	CAYNNNNRTG	3 cut(s)	1260, 1291, 1371
SaqAI	TTAA	3 cut(s)	120, 296, 332
SatI	GCNGC	7 cut(s)	661, 819, 831, 1198, 1201, 1204, 1442
Sau3AI	GATC	5 cut(s)	105, 192, 427, 507, 1252
Sau96I	GGNCC	1 cut(s)	1283
SchI	GAGTC	1 cut(s)	1483
ScrFI	CCNGG	4 cut(s)	407, 734, 892, 1494
SduI	GDGCHC	2 cut(s)	1101, 1437
SfaNI	GCATC	4 cut(s)	243, 383, 1321, 1375
SinI	GGWCC	1 cut(s)	1283
SmiMI	CAYNNNNRTG	3 cut(s)	1260, 1291, 1371
SphI	GCATGC	1 cut(s)	837
SsiI	CCGC	9 cut(s)	60, 150, 206, 561, 661, 1069, 1198, 1204, 1441
SspI	AATATT	1 cut(s)	587
SspMI	CTAG	3 cut(s)	618, 791, 929
StyD4I	CCNGG	4 cut(s)	405, 732, 890, 1492
TaiI	ACGT	4 cut(s)	526, 885, 1282, 1295
TaqII	GACCGA	1 cut(s)	949
TauI	GCSGC	4 cut(s)	663, 1200, 1206, 1444
TfiI	GAWTC	1 cut(s)	137
Tru1I	TTAA	3 cut(s)	120, 296, 332
Tru9I	TTAA	3 cut(s)	120, 296, 332
TscAI	CASTG	6 cut(s)	166, 611, 1012, 1249, 1341, 1526
TseFI	GTSAC	2 cut(s)	1265, 1459
TseI	GCWGC	3 cut(s)	818, 830, 1200
Tsp45I	GTSAC	2 cut(s)	1265, 1459
TspDTI	ATGAA	5 cut(s)	10, 212, 1142, 1146, 1239
TspRI	CASTG	6 cut(s)	166, 611, 1012, 1249, 1341, 1526
VpaK11BI	GGWCC	1 cut(s)	1283
XapI	RAATTY	3 cut(s)	566, 697, 1140
XceI	RCATGY	1 cut(s)	837
XmiI	GTMKAC	1 cut(s)	1044
XmnI	GAANNNNTTC	2 cut(s)	600, 1230
XspI	CTAG	3 cut(s)	618, 791, 929

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.