Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

58289556 .. 58290233

Gene Structure 678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40299

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAATGAAATTGAAATTATCACCCGCCTGTGCCACAAAAATTTAGTCACTCTTTATGGCTGCACTTCACGCCGCAGCCGTGAGCTCCTCCTTGTGTATGAATACATTCCCAATGGCACTGTTGCTGATCATCTCCATGGTGACCTAGCACACCGTGGTTTACTCATTTGGCCTATTCGTATGAGCATTGCCATAGAAACTGCCTATGCATTGTCTCACTTCCATGCTTCTGATATCTTGCATCGTGATGTGAAGACTAGCAACATTCTCCTTGATAACAATTTGTGTGTAAAAGTTGCAGATTTTGGGCTCTCCCGGATTTTCCCCCTTGACATCACTCATGTCTCAACTGCTCCACCAGGGTCCCCTGGTTATGTTGACCCACAGTATCATCAATGTTACCAGCTAACTAGTAAGAGTGATGTTTATAGTTTTGGGGTTGTACTCATTGAGCTTATAACGTCTATGCCAGCAGTTGATATAACTAGGCAGCGGGATGAGATCAATTTATCTAACTTAGACATAAACAAGATTCGAAAAGGATTATACAATGAGCTGTTAGATTCATCTCTTGGGTTTGAGTCAGATAATGAAGTGAAAAGGATGACAATTGCAGTAGCAGAGTTGGCATTTCAATGTTTGCAGCAGGACAACAACATGAGGCCTTACCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

225

Amino Acids

25.51

Weight (kDa)

5.9

Isoelectric Point (pI)

45.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	1 - 222	4.6e-33	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	1 - 163	1.5e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	458
AciI	CCGC	3 cut(s)	25, 73, 493
AcsI	RAATTY	1 cut(s)	40
AdeI	CACNNNGTG	1 cut(s)	155
AfaI	GTAC	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	14, 635
AhlI	ACTAGT	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	358, 367
AluBI	AGCT	4 cut(s)	85, 406, 454, 556
AluI	AGCT	4 cut(s)	85, 406, 454, 556
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	2 cut(s)	219, 349
AoxI	GGCC	2 cut(s)	170, 662
ApeKI	GCWGC	4 cut(s)	60, 75, 490, 643
ApoI	RAATTY	1 cut(s)	40
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	363
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	13, 152
AsuII	TTCGAA	1 cut(s)	535
AvaII	GGWCC	1 cut(s)	363
BanII	GRGCYC	2 cut(s)	87, 312
BbsI	GAAGAC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	4 cut(s)	47, 87, 502, 655
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	2 cut(s)	360, 369
BclI	TGATCA	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	219, 349
BcuI	ACTAGT	1 cut(s)	410
BfaI	CTAG	4 cut(s)	146, 258, 411, 486
BisI	GCNGC	5 cut(s)	61, 73, 76, 491, 644
BlsI	GCNGC	5 cut(s)	62, 74, 77, 492, 645
Bme1390I	CCNGG	3 cut(s)	316, 360, 369
Bme18I	GGWCC	1 cut(s)	363
BmgT120I	GGNCC	1 cut(s)	363
BmiI	GGNNCC	2 cut(s)	364, 365
BmrFI	CCNGG	3 cut(s)	316, 360, 369
BmsI	GCATC	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	535
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	4 cut(s)	136, 154, 359, 367
Bse3DI	GCAATG	1 cut(s)	186
BseBI	CCWGG	2 cut(s)	360, 369
BseDI	CCNNGG	4 cut(s)	136, 154, 359, 367
BseGI	GGATG	2 cut(s)	502, 609
BseMI	GCAATG	1 cut(s)	186
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	4 cut(s)	47, 87, 502, 655
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	172, 664
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	349
BsmAI	GTCTC	2 cut(s)	219, 349
BsmFI	GGGAC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	172, 664
Bsp119I	TTCGAA	1 cut(s)	535
Bsp1286I	GDGCHC	2 cut(s)	87, 312
Bsp143I	GATC	2 cut(s)	127, 501
Bsp19I	CCATGG	1 cut(s)	136
BspACI	CCGC	3 cut(s)	25, 73, 493
BspANI	GGCC	2 cut(s)	172, 664
BspLI	GGNNCC	2 cut(s)	364, 365
BspT104I	TTCGAA	1 cut(s)	535
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	4 cut(s)	136, 154, 359, 367
BssMI	GATC	2 cut(s)	127, 501
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	360, 369
Bst4CI	ACNGT	3 cut(s)	121, 155, 387
BstBI	TTCGAA	1 cut(s)	535
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	517
BstDSI	CCRYGG	2 cut(s)	136, 154
BstEII	GGTNACC	1 cut(s)	140
BstF5I	GGATG	2 cut(s)	502, 609
BstKTI	GATC	2 cut(s)	130, 504
BstMAI	GTCTC	2 cut(s)	219, 349
BstMBI	GATC	2 cut(s)	127, 501
BstMWI	GCNNNNNNNGC	2 cut(s)	69, 626
BstNI	CCWGG	2 cut(s)	360, 369
BstPI	GGTNACC	1 cut(s)	140
BstSCI	CCNGG	3 cut(s)	314, 358, 367
BstV1I	GCAGC	4 cut(s)	47, 87, 502, 655
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	2 cut(s)	172, 664
BtgI	CCRYGG	2 cut(s)	136, 154
BtsCI	GGATG	2 cut(s)	502, 609
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	443
CviAII	CATG	5 cut(s)	137, 224, 341, 658, 671
CviJI	RGCY	9 cut(s)	60, 78, 85, 172, 310, 406, 454, 556, 664
CviKI_1	RGCY	9 cut(s)	60, 78, 85, 172, 310, 406, 454, 556, 664
CviQI	GTAC	1 cut(s)	443
DdeI	CTNAG	1 cut(s)	517
DpnI	GATC	2 cut(s)	129, 503
DpnII	GATC	2 cut(s)	127, 501
DraIII	CACNNNGTG	1 cut(s)	155
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	136
Eco147I	AGGCCT	1 cut(s)	664
Eco24I	GRGCYC	2 cut(s)	87, 312
Eco32I	GATATC	1 cut(s)	235
Eco47I	GGWCC	1 cut(s)	363
Eco53kI	GAGCTC	1 cut(s)	85
Eco91I	GGTNACC	1 cut(s)	140
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	140
EcoRII	CCWGG	2 cut(s)	358, 367
EcoRV	GATATC	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	136
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	2 cut(s)	87, 312
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	5 cut(s)	140, 227, 344, 661, 674
FaqI	GGGAC	1 cut(s)	349
FatI	CATG	5 cut(s)	136, 223, 340, 657, 670
FauI	CCCGC	2 cut(s)	32, 486
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	5 cut(s)	61, 73, 76, 491, 644
FokI	GGATG	2 cut(s)	509, 616
FriOI	GRGCYC	2 cut(s)	87, 312
Fsp4HI	GCNGC	5 cut(s)	61, 73, 76, 491, 644
FspBI	CTAG	4 cut(s)	146, 258, 411, 486
GluI	GCNGC	5 cut(s)	61, 73, 76, 491, 644
HaeIII	GGCC	2 cut(s)	172, 664
HapII	CCGG	1 cut(s)	316
Hin1II	CATG	5 cut(s)	140, 227, 344, 661, 674
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	532, 563, 581
HpaII	CCGG	1 cut(s)	316
HphI	GGTGA	2 cut(s)	13, 152
Hpy166II	GTNNAC	2 cut(s)	161, 379
Hpy188I	TCNGA	3 cut(s)	232, 586, 677
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	2 cut(s)	161, 379
HpyCH4III	ACNGT	3 cut(s)	121, 155, 387
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	6 cut(s)	63, 209, 241, 299, 614, 643
HpyF10VI	GCNNNNNNNGC	2 cut(s)	69, 626
HpyF3I	CTNAG	1 cut(s)	517
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	5 cut(s)	140, 227, 344, 661, 674
KflI	GGGWCCC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 501
LmnI	GCTCC	2 cut(s)	90, 358
LpnPI	CCDG	9 cut(s)	41, 329, 345, 354, 372, 381, 416, 483, 632
Lsp1109I	GCAGC	4 cut(s)	47, 87, 502, 655
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	4 cut(s)	146, 258, 411, 486
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	3 cut(s)	46, 140, 398
MalI	GATC	2 cut(s)	129, 503
MboI	GATC	2 cut(s)	127, 501
MboII	GAAGA	1 cut(s)	265
MfeI	CAATTG	1 cut(s)	609
MhlI	GDGCHC	2 cut(s)	87, 312
MluCI	AATT	6 cut(s)	9, 15, 40, 280, 505, 609
MlyI	GAGTC	1 cut(s)	590
MnlI	CCTC	2 cut(s)	98, 654
Mph1103I	ATGCAT	1 cut(s)	211
MroXI	GAANNNNTTC	1 cut(s)	105
MslI	CAYNNNNRTG	4 cut(s)	135, 222, 246, 634
MspA1I	CMGCKG	1 cut(s)	493
MspI	CCGG	1 cut(s)	316
MspR9I	CCNGG	3 cut(s)	316, 360, 369
MunI	CAATTG	1 cut(s)	609
MvaI	CCWGG	2 cut(s)	360, 369
MwoI	GCNNNNNNNGC	2 cut(s)	69, 626
NciI	CCSGG	1 cut(s)	316
NcoI	CCATGG	1 cut(s)	136
NdeII	GATC	2 cut(s)	127, 501
NlaIII	CATG	5 cut(s)	140, 227, 344, 661, 674
NlaIV	GGNNCC	2 cut(s)	364, 365
NmuCI	GTSAC	2 cut(s)	46, 140
NsiI	ATGCAT	1 cut(s)	211
NspV	TTCGAA	1 cut(s)	535
PceI	AGGCCT	1 cut(s)	664
PcsI	WCGNNNNNNNCGW	1 cut(s)	76
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	532, 563
PfoI	TCCNGGA	1 cut(s)	314
PkrI	GCNGC	5 cut(s)	62, 74, 77, 492, 645
PleI	GAGTC	1 cut(s)	589
PpsI	GAGTC	1 cut(s)	589
PpuMI	RGGWCCY	1 cut(s)	363
PsiI	TTATAA	1 cut(s)	458
Psp124BI	GAGCTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	2 cut(s)	358, 367
PspEI	GGTNACC	1 cut(s)	140
PspGI	CCWGG	2 cut(s)	358, 367
PspN4I	GGNNCC	2 cut(s)	364, 365
PspPI	GGNCC	1 cut(s)	363
PspPPI	RGGWCCY	1 cut(s)	363
RsaI	GTAC	1 cut(s)	444
RsaNI	GTAC	1 cut(s)	443
RseI	CAYNNNNRTG	4 cut(s)	135, 222, 246, 634
SacI	GAGCTC	1 cut(s)	87
SatI	GCNGC	5 cut(s)	61, 73, 76, 491, 644
Sau3AI	GATC	2 cut(s)	127, 501
Sau96I	GGNCC	1 cut(s)	363
SchI	GAGTC	1 cut(s)	590
ScrFI	CCNGG	3 cut(s)	316, 360, 369
SduI	GDGCHC	2 cut(s)	87, 312
SetI	ASST	6 cut(s)	87, 147, 408, 456, 464, 558
SfaNI	GCATC	1 cut(s)	250
SfuI	TTCGAA	1 cut(s)	535
SinI	GGWCC	1 cut(s)	363
SmiMI	CAYNNNNRTG	4 cut(s)	135, 222, 246, 634
SpeI	ACTAGT	1 cut(s)	410
Sse9I	AATT	6 cut(s)	9, 15, 40, 280, 505, 609
SseBI	AGGCCT	1 cut(s)	664
SsiI	CCGC	3 cut(s)	25, 73, 493
SspMI	CTAG	4 cut(s)	146, 258, 411, 486
SstI	GAGCTC	1 cut(s)	87
StuI	AGGCCT	1 cut(s)	664
StyD4I	CCNGG	3 cut(s)	314, 358, 367
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	3 cut(s)	121, 155, 387
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	1 cut(s)	535
TasI	AATT	6 cut(s)	9, 15, 40, 280, 505, 609
TatI	WGTACW	1 cut(s)	442
TauI	GCSGC	1 cut(s)	75
TfiI	GAWTC	2 cut(s)	532, 563
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	2 cut(s)	46, 140
TseI	GCWGC	4 cut(s)	60, 75, 490, 643
Tsp45I	GTSAC	2 cut(s)	46, 140
TspDTI	ATGAA	5 cut(s)	17, 21, 114, 555, 606
TspRI	CASTG	1 cut(s)	124
VpaK11BI	GGWCC	1 cut(s)	363
XapI	RAATTY	1 cut(s)	40
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	4 cut(s)	146, 258, 411, 486
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.