Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

58261737 .. 58262243

Gene Structure 507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40294

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGAATGAAATTGGGATTCTGACCCGTCTGCGCCACAGAAACTTAGTCAGCTTTTATGGCTGCACTACGCACAGCAGCCGTGAACTCCTCCTTGTGTACGAATATGTTTATAATGGCACTGTGGCTGATCATCTCCGTGGAAACCTAGCAGGCCGTGGTTTACTCACATGGCCTATTCGTATGAGCATTGCCATAGAAACTGCCAATGCACTATCTTACCTCCATGCTAGTGATGTTGTGCATCGTGATGTCAAGACTTCCAACATTCTTCTCAGTAGAAATTTCTGTGTTAAAGTTGCAGATTTTGGGCTCTCCCAGCTTTTTCCGATTGATGTTAGCCGTGTCTCAACTAGCCTGCAAGGCACCCTTGGTTATGTTGATCCAGCTTATCAGGAAACTTGCAAGCTAACTAGTATGAATGATGTGTATAGTTTTGGGGTTGTTCTGATTGAACTAGTATCATCTATGCGAGCATTCGACATGAGGAAGCAGGCTAGAGGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

8.82

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 155	5.2e-34	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 163	1.8e-32	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	111
AccB1I	GGYRCC	1 cut(s)	362
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	1 cut(s)	280
AfaI	GTAC	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	452
AhlI	ACTAGT	2 cut(s)	410, 454
AluBI	AGCT	4 cut(s)	51, 319, 386, 406
AluI	AGCT	4 cut(s)	51, 319, 386, 406
Alw26I	GTCTC	1 cut(s)	349
AlwI	GGATC	1 cut(s)	374
AoxI	GGCC	2 cut(s)	151, 170
ApeKI	GCWGC	2 cut(s)	60, 75
ApoI	RAATTY	1 cut(s)	280
AspLEI	GCGC	1 cut(s)	33
BanI	GGYRCC	1 cut(s)	362
BanII	GRGCYC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	47, 87
BceAI	ACGGC	3 cut(s)	63, 138, 324
BclI	TGATCA	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	349
BcuI	ACTAGT	2 cut(s)	410, 454
BfaI	CTAG	6 cut(s)	146, 228, 351, 411, 455, 495
BglI	GCCNNNNNGGC	1 cut(s)	360
BisI	GCNGC	2 cut(s)	61, 76
BlsI	GCNGC	2 cut(s)	62, 77
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	250
BsaJI	CCNNGG	3 cut(s)	136, 154, 367
Bse3DI	GCAATG	1 cut(s)	186
BseDI	CCNNGG	3 cut(s)	136, 154, 367
BseMI	GCAATG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	286
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	47, 87
BseYI	CCCAGC	1 cut(s)	315
BsgI	GTGCAG	1 cut(s)	46
BshFI	GGCC	2 cut(s)	153, 172
BshNI	GGYRCC	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	349
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	2 cut(s)	153, 172
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	2 cut(s)	127, 379
BspANI	GGCC	2 cut(s)	153, 172
BspCNI	CTCAG	1 cut(s)	285
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	374
BspT107I	GGYRCC	1 cut(s)	362
BsrDI	GCAATG	1 cut(s)	186
BssECI	CCNNGG	3 cut(s)	136, 154, 367
BssMI	GATC	2 cut(s)	127, 379
BssT1I	CCWWGG	1 cut(s)	367
Bst4CI	ACNGT	1 cut(s)	121
BstC8I	GCNNGC	5 cut(s)	151, 356, 404, 471, 492
BstDEI	CTNAG	2 cut(s)	43, 272
BstDSI	CCRYGG	2 cut(s)	136, 154
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	2 cut(s)	130, 382
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	2 cut(s)	127, 379
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 316, 360
BstV1I	GCAGC	2 cut(s)	47, 87
BsuRI	GGCC	2 cut(s)	153, 172
BtgI	CCRYGG	2 cut(s)	136, 154
BtsIMutI	CAGTG	1 cut(s)	117
Cac8I	GCNNGC	5 cut(s)	151, 356, 404, 471, 492
CfoI	GCGC	1 cut(s)	33
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	3 cut(s)	168, 224, 481
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	43, 272
DpnI	GATC	2 cut(s)	129, 381
DpnII	GATC	2 cut(s)	127, 379
Eco130I	CCWWGG	1 cut(s)	367
Eco24I	GRGCYC	1 cut(s)	312
EcoT14I	CCWWGG	1 cut(s)	367
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	3 cut(s)	171, 227, 484
FalI	AAGNNNNNCTT	2 cut(s)	351, 383
FatI	CATG	3 cut(s)	167, 223, 480
FbaI	TGATCA	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	61, 76
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	61, 76
FspBI	CTAG	6 cut(s)	146, 228, 351, 411, 455, 495
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	2 cut(s)	61, 76
GsaI	CCCAGC	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	153, 172
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	171, 227, 484
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	16
Hpy166II	GTNNAC	3 cut(s)	83, 97, 161
Hpy188I	TCNGA	3 cut(s)	21, 327, 447
Hpy188III	TCNNGA	3 cut(s)	245, 253, 392
Hpy8I	GTNNAC	3 cut(s)	83, 97, 161
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	6 cut(s)	63, 209, 241, 299, 358, 402
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 316, 360
HpyF3I	CTNAG	2 cut(s)	43, 272
Hsp92II	CATG	3 cut(s)	171, 227, 484
HspAI	GCGC	1 cut(s)	31
Ksp22I	TGATCA	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	127, 379
LpnPI	CCDG	6 cut(s)	135, 329, 368, 377, 396, 476
Lsp1109I	GCAGC	2 cut(s)	47, 87
LweI	GCATC	1 cut(s)	250
MaeI	CTAG	6 cut(s)	146, 228, 351, 411, 455, 495
MalI	GATC	2 cut(s)	129, 381
MboI	GATC	2 cut(s)	127, 379
MboII	GAAGA	1 cut(s)	260
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	2 cut(s)	9, 280
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	4 cut(s)	98, 230, 477, 491
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	3 cut(s)	135, 228, 246
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	57, 316, 360
NdeII	GATC	2 cut(s)	127, 379
NlaIII	CATG	3 cut(s)	171, 227, 484
NlaIV	GGNNCC	1 cut(s)	364
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	2 cut(s)	62, 77
PsiI	TTATAA	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	364
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	3 cut(s)	135, 228, 246
SaqAI	TTAA	1 cut(s)	291
SatI	GCNGC	2 cut(s)	61, 76
Sau3AI	GATC	2 cut(s)	127, 379
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	53, 147, 222, 321, 388, 408
SfaNI	GCATC	1 cut(s)	250
SmiMI	CAYNNNNRTG	3 cut(s)	135, 228, 246
SpeI	ACTAGT	2 cut(s)	410, 454
Sse9I	AATT	2 cut(s)	9, 280
SspMI	CTAG	6 cut(s)	146, 228, 351, 411, 455, 495
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	1 cut(s)	477
TasI	AATT	2 cut(s)	9, 280
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	60, 75
TspDTI	ATGAA	3 cut(s)	17, 21, 431
TspGWI	ACGGA	1 cut(s)	125
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	280
XspI	CTAG	6 cut(s)	146, 228, 351, 411, 455, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.