Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008439.1

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Reverse (-)

35585 .. 36379

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008439.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atggctaccgtggctgtgtttattttctctgtcttcactcatcttgtgcttctttactccgctgagagttgtccaccctccttctgtaatgagacagtagctagaatcttcttcccctttaaaaacacaacacacagtcgtcctgaatgcggattctacactcttgactgttctgaccaccttaaaccgaagattcaactcaaagatggcggatactggtttcaattggaaagcacttatcgattagattccgttgttatcgatgacaggtggcttcaggagcgcatagagcgcctaaaaggagatagctgtgatgatgatgttttcaatgttttaagtcttcccaactctcctcctgtgttccatccacgcacacccaaccttaccctgttcagatgcaacaagactcctaacaagggtccgaactatgcctgcacgagtgtaaatcatatttactatactgtatcaaatcatagtttaaattgctcagccattcatatccccatacgtcaaggttttccttccgatgtctataatgcttctgcattgactgctaaattctcccttcattttaattgcttggatgatgatggagaatggaagtgtggccccccaccagtaggtaaatgttggaatattcagaagggagaattccccccccccccccaaggtgtccccccaccaccagaaggtaaatgccaggatgaggaggatggcaaatgtgccaaagacatcactgtttgtcttgctctgtcgtgccatactccaattcctttcctccagcgatattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

264

Amino Acids

29.73

Weight (kDa)

6.12

Isoelectric Point (pI)

58.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 150, 210
AcsI	RAATTY	2 cut(s)	557, 650
AcuI	CTGAAG	1 cut(s)	260
AfiI	CCNNNNNNNGG	6 cut(s)	149, 416, 620, 668, 689, 706
AgsI	TTSAA	3 cut(s)	197, 224, 328
AjnI	CCWGG	1 cut(s)	699
AluBI	AGCT	2 cut(s)	101, 309
AluI	AGCT	2 cut(s)	101, 309
Alw26I	GTCTC	1 cut(s)	86
AoxI	GGCC	1 cut(s)	607
ApoI	RAATTY	2 cut(s)	557, 650
AspLEI	GCGC	2 cut(s)	285, 294
AspS9I	GGNCC	2 cut(s)	419, 608
AvaII	GGWCC	1 cut(s)	419
BauI	CACGAG	1 cut(s)	436
BbsI	GAAGAC	2 cut(s)	25, 332
BccI	CCATC	4 cut(s)	200, 372, 584, 707
BciT130I	CCWGG	1 cut(s)	701
BciVI	GTATCC	1 cut(s)	206
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	206
BlpI	GCTNAGC	1 cut(s)	487
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	1 cut(s)	419
BmgT120I	GGNCC	2 cut(s)	419, 608
BmiI	GGNNCC	2 cut(s)	420, 610
BmrFI	CCNGG	1 cut(s)	701
BmsI	GCATC	1 cut(s)	386
BpiI	GAAGAC	2 cut(s)	25, 332
BpmI	CTGGAG	1 cut(s)	764
Bpu1102I	GCTNAGC	1 cut(s)	487
Bsa29I	ATCGAT	2 cut(s)	241, 261
BsaJI	CCNNGG	2 cut(s)	9, 667
Bsc4I	CCNNNNNNNGG	6 cut(s)	149, 416, 620, 668, 689, 706
Bse1I	ACTGG	2 cut(s)	221, 617
BseBI	CCWGG	1 cut(s)	701
BseCI	ATCGAT	2 cut(s)	241, 261
BseDI	CCNNGG	2 cut(s)	9, 667
BseGI	GGATG	4 cut(s)	364, 589, 709, 718
BseLI	CCNNNNNNNGG	6 cut(s)	149, 416, 620, 668, 689, 706
BseMII	CTCAG	2 cut(s)	54, 501
BseNI	ACTGG	2 cut(s)	221, 617
BseRI	GAGGAG	2 cut(s)	342, 722
BsgI	GTGCAG	1 cut(s)	418
BshFI	GGCC	1 cut(s)	609
BshVI	ATCGAT	2 cut(s)	241, 261
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	6 cut(s)	149, 416, 620, 668, 689, 706
BsmAI	GTCTC	1 cut(s)	86
BsmFI	GGGAC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	609
Bsp1720I	GCTNAGC	1 cut(s)	487
BspACI	CCGC	3 cut(s)	60, 150, 210
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	2 cut(s)	55, 500
BspDI	ATCGAT	2 cut(s)	241, 261
BspLI	GGNNCC	2 cut(s)	420, 610
BsrI	ACTGG	2 cut(s)	221, 617
BssECI	CCNNGG	2 cut(s)	9, 667
BssSI	CACGAG	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	667
Bst2BI	CACGAG	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	701
Bst4CI	ACNGT	6 cut(s)	10, 97, 137, 170, 463, 739
BstAPI	GCANNNNNTGC	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	63, 487
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	364, 589, 709, 718
BstH2I	RGCGCY	1 cut(s)	295
BstHHI	GCGC	2 cut(s)	285, 294
BstMAI	GTCTC	1 cut(s)	86
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 551
BstNI	CCWGG	1 cut(s)	701
BstSCI	CCNGG	1 cut(s)	699
BstV2I	GAAGAC	2 cut(s)	25, 332
Bsu15I	ATCGAT	2 cut(s)	241, 261
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	1 cut(s)	609
BsuTUI	ATCGAT	2 cut(s)	241, 261
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	364, 589, 709, 718
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	1 cut(s)	433
CfoI	GCGC	2 cut(s)	285, 294
Cfr13I	GGNCC	2 cut(s)	419, 608
ClaI	ATCGAT	2 cut(s)	241, 261
CviJI	RGCY	7 cut(s)	5, 14, 101, 274, 309, 491, 609
CviKI_1	RGCY	7 cut(s)	5, 14, 101, 274, 309, 491, 609
DdeI	CTNAG	2 cut(s)	63, 487
DraI	TTTAAA	2 cut(s)	121, 480
EciI	GGCGGA	1 cut(s)	225
Eco130I	CCWWGG	1 cut(s)	667
Eco47I	GGWCC	1 cut(s)	419
Eco57I	CTGAAG	1 cut(s)	260
EcoRI	GAATTC	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	699
EcoT14I	CCWWGG	1 cut(s)	667
ErhI	CCWWGG	1 cut(s)	667
FaiI	YATR	9 cut(s)	287, 429, 450, 459, 474, 498, 506, 534, 762
FaqI	GGGAC	1 cut(s)	659
FokI	GGATG	4 cut(s)	351, 596, 716, 725
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	2 cut(s)	284, 293
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	295
HaeIII	GGCC	1 cut(s)	609
HhaI	GCGC	2 cut(s)	285, 294
Hin6I	GCGC	2 cut(s)	283, 292
HinP1I	GCGC	2 cut(s)	283, 292
HinfI	GANTC	5 cut(s)	105, 153, 193, 248, 406
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	175, 395, 423, 526, 642
Hpy188III	TCNNGA	4 cut(s)	143, 164, 278, 792
Hpy8I	GTNNAC	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	91, 531, 575, 637, 683
HpyCH4III	ACNGT	6 cut(s)	10, 97, 137, 170, 463, 739
HpyCH4IV	ACGT	1 cut(s)	508
HpyCH4V	TGCA	3 cut(s)	399, 435, 545
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 551
HpyF3I	CTNAG	2 cut(s)	63, 487
HpySE526I	ACGT	1 cut(s)	508
HspAI	GCGC	2 cut(s)	283, 292
LmnI	GCTCC	1 cut(s)	280
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	508
MboII	GAAGA	5 cut(s)	25, 100, 103, 202, 332
MfeI	CAATTG	1 cut(s)	224
MluCI	AATT	6 cut(s)	224, 481, 557, 574, 650, 768
MlyI	GAGTC	1 cut(s)	400
MmeI	TCCRAC	1 cut(s)	611
MnlI	CCTC	5 cut(s)	88, 363, 700, 703, 788
MseI	TTAA	5 cut(s)	120, 183, 335, 479, 573
MspA1I	CMGCKG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	701
MunI	CAATTG	1 cut(s)	224
Mva1269I	GAATGC	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	701
MwoI	GCNNNNNNNGC	5 cut(s)	11, 280, 289, 291, 551
NlaIV	GGNNCC	2 cut(s)	420, 610
PctI	GAATGC	1 cut(s)	152
PfeI	GAWTC	4 cut(s)	105, 153, 193, 248
PleI	GAGTC	1 cut(s)	400
PpsI	GAGTC	1 cut(s)	400
Psp6I	CCWGG	1 cut(s)	699
PspGI	CCWGG	1 cut(s)	699
PspN4I	GGNNCC	2 cut(s)	420, 610
PspPI	GGNCC	2 cut(s)	419, 608
SaqAI	TTAA	5 cut(s)	120, 183, 335, 479, 573
Sau96I	GGNCC	2 cut(s)	419, 608
SchI	GAGTC	1 cut(s)	400
ScrFI	CCNGG	1 cut(s)	701
SfaNI	GCATC	1 cut(s)	386
SinI	GGWCC	1 cut(s)	419
Sse9I	AATT	6 cut(s)	224, 481, 557, 574, 650, 768
SsiI	CCGC	3 cut(s)	60, 150, 210
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	1 cut(s)	667
TaaI	ACNGT	6 cut(s)	10, 97, 137, 170, 463, 739
TaiI	ACGT	1 cut(s)	511
TaqI	TCGA	2 cut(s)	241, 261
TasI	AATT	6 cut(s)	224, 481, 557, 574, 650, 768
TfiI	GAWTC	4 cut(s)	105, 153, 193, 248
Tru1I	TTAA	5 cut(s)	120, 183, 335, 479, 573
Tru9I	TTAA	5 cut(s)	120, 183, 335, 479, 573
TscAI	CASTG	1 cut(s)	742
TspDTI	ATGAA	2 cut(s)	485, 557
TspGWI	ACGGA	1 cut(s)	241
TspRI	CASTG	1 cut(s)	742
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	2 cut(s)	557, 650
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.