Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

50430446 .. 50431354

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG341600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGGAGCAAATAGTCGTCTTGTTTTGTTTACTCTCTCTGCTCTCACTCGTCTTGTTATTCTAATGTACTCCGCTGAAGAAGTGAGAAGCCAAACTACTTGTCCAGCCTACTTCTGTAATGATATAGTAGGCAGTCTTTCCTTCCCCTTCAAAAACATAACACAGAGTCGTCCTGAATGCGGATTGTACACTGTCAACTGTTCTGACCGCCATAATCCGAAGATCCGGCTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATTACTCGATCAAATTCCGTTTTTATCAATGACAGCCGGCTTCAGGAGCGCATAGAGCGCTTAAAAGGAGATACCTGTGATGATGATGTTTTCAATGATTTAAGTCTTCCAGGCCCTTCTCCCATCCTCCATACATCCACAAACAACCTTACCCTGTTCAGATGCAACAGCACCCAGGAGAAAACTCCTTACAAGGATCCAATCTATGCCTGCAGGAGTGTAAATTATATTTACTATACTGTATCAAATGATAGTTTAGATTGCTCAGCCATTCAGATTCCCATACTTCCACATTCCCGTCCCAACTCCTATAGTCCTTCTGCATTGACTGCTAAATTATCCCTTCAAGTGCTATATACCAAAGAATGTGTTCAGTGTTATAGTAGAGGAGGTAGATGCTTGGAAGACAATGGAGAATTCAGATGTACCCGCCCACAAGAAGATAAATGCTGGAATGAAAAGGGACAATTCAATTGTGCCCTCGCACAAGAAAGTAAATGCCAGGATGAGGAGGAGGAAGGCAAATGTGCCAAAGCAGGTAAATGCATCGAAATTTGTGTTTGTACTATTTGTCTTTTCATCCGGGGAGATATTGATAGATTCAGTTGCCTTGTTGCGGAGGACCTTCACCTTGGAGGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

302

Amino Acids

34.05

Weight (kDa)

5.56

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	791
AciI	CCGC	5 cut(s)	72, 180, 208, 694, 881
AclWI	GGATC	3 cut(s)	217, 455, 468
AcsI	RAATTY	3 cut(s)	277, 680, 816
AcuI	CTGAAG	2 cut(s)	96, 290
AfaI	GTAC	4 cut(s)	68, 188, 691, 829
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	4 cut(s)	179, 307, 772, 880
AgsI	TTSAA	5 cut(s)	151, 254, 358, 611, 736
AjnI	CCWGG	3 cut(s)	373, 438, 765
AlwI	GGATC	3 cut(s)	217, 455, 468
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	1 cut(s)	376
ApoI	RAATTY	3 cut(s)	277, 680, 816
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
Asp700I	GAANNNNTTC	1 cut(s)	633
AspLEI	GCGC	2 cut(s)	315, 324
AspS9I	GGNCC	2 cut(s)	377, 886
AsuC2I	CCSGG	1 cut(s)	848
AsuHPI	GGTGA	1 cut(s)	884
AvaII	GGWCC	1 cut(s)	886
BaeGI	GKGCMC	1 cut(s)	745
BamHI	GGATCC	1 cut(s)	460
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BbsI	GAAGAC	2 cut(s)	362, 675
BccI	CCATC	2 cut(s)	230, 395
BciT130I	CCWGG	3 cut(s)	375, 440, 767
BciVI	GTATCC	1 cut(s)	236
BcnI	CCSGG	1 cut(s)	848
BfmI	CTRYAG	2 cut(s)	475, 574
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	529
Bme1390I	CCNGG	4 cut(s)	375, 440, 767, 848
Bme18I	GGWCC	1 cut(s)	886
BmgT120I	GGNCC	2 cut(s)	377, 886
BmiI	GGNNCC	1 cut(s)	462
BmrFI	CCNGG	4 cut(s)	375, 440, 767, 848
BmsI	GCATC	3 cut(s)	416, 650, 819
BpiI	GAAGAC	2 cut(s)	362, 675
Bpu1102I	GCTNAGC	1 cut(s)	529
BpuMI	CCSGG	1 cut(s)	848
BsaJI	CCNNGG	3 cut(s)	438, 847, 895
Bsc4I	CCNNNNNNNGG	4 cut(s)	179, 307, 772, 880
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	251
BseBI	CCWGG	3 cut(s)	375, 440, 767
BseDI	CCNNGG	3 cut(s)	438, 847, 895
BseGI	GGATG	4 cut(s)	387, 398, 775, 843
BseLI	CCNNNNNNNGG	4 cut(s)	179, 307, 772, 880
BseMII	CTCAG	1 cut(s)	543
BseNI	ACTGG	1 cut(s)	251
BseRI	GAGGAG	3 cut(s)	666, 788, 791
BseSI	GKGCMC	1 cut(s)	745
BshFI	GGCC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	226, 301, 847
BslFI	GGGAC	2 cut(s)	549, 741
BslI	CCNNNNNNNGG	4 cut(s)	179, 307, 772, 880
BsmFI	GGGAC	2 cut(s)	549, 741
BsmI	GAATGC	1 cut(s)	182
BsnI	GGCC	1 cut(s)	378
Bsp1286I	GDGCHC	1 cut(s)	745
Bsp1407I	TGTACA	1 cut(s)	186
Bsp143I	GATC	3 cut(s)	222, 272, 460
Bsp1720I	GCTNAGC	1 cut(s)	529
BspACI	CCGC	5 cut(s)	72, 180, 208, 694, 881
BspANI	GGCC	1 cut(s)	378
BspCNI	CTCAG	1 cut(s)	542
BspLI	GGNNCC	1 cut(s)	462
BspMAI	CTGCAG	1 cut(s)	479
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	3 cut(s)	217, 455, 468
BsrFI	RCCGGY	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	186
BsrI	ACTGG	1 cut(s)	251
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	3 cut(s)	438, 847, 895
BssMI	GATC	3 cut(s)	222, 272, 460
BssT1I	CCWWGG	1 cut(s)	895
Bst2UI	CCWGG	3 cut(s)	375, 440, 767
Bst4CI	ACNGT	3 cut(s)	193, 200, 505
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstAUI	TGTACA	1 cut(s)	186
BstC8I	GCNNGC	2 cut(s)	302, 475
BstDEI	CTNAG	1 cut(s)	529
BstF5I	GGATG	4 cut(s)	387, 398, 775, 843
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	2 cut(s)	315, 324
BstKTI	GATC	3 cut(s)	225, 275, 463
BstMBI	GATC	3 cut(s)	222, 272, 460
BstMWI	GCNNNNNNNGC	4 cut(s)	310, 319, 321, 593
BstNI	CCWGG	3 cut(s)	375, 440, 767
BstSCI	CCNGG	4 cut(s)	373, 438, 765, 846
BstSFI	CTRYAG	2 cut(s)	475, 574
BstSLI	GKGCMC	1 cut(s)	745
BstV2I	GAAGAC	2 cut(s)	362, 675
BstX2I	RGATCY	2 cut(s)	222, 460
BstYI	RGATCY	2 cut(s)	222, 460
BsuI	GTATCC	1 cut(s)	236
BsuRI	GGCC	1 cut(s)	378
BtsCI	GGATG	4 cut(s)	387, 398, 775, 843
BtsIMutI	CAGTG	2 cut(s)	189, 644
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	302, 475
CfoI	GCGC	2 cut(s)	315, 324
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	2 cut(s)	377, 886
Csp6I	GTAC	4 cut(s)	67, 187, 690, 828
CviJI	RGCY	7 cut(s)	90, 107, 229, 300, 304, 378, 533
CviKI_1	RGCY	7 cut(s)	90, 107, 229, 300, 304, 378, 533
CviQI	GTAC	4 cut(s)	67, 187, 690, 828
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	3 cut(s)	224, 274, 462
DpnII	GATC	3 cut(s)	222, 272, 460
Eco130I	CCWWGG	1 cut(s)	895
Eco47I	GGWCC	1 cut(s)	886
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	2 cut(s)	96, 290
EcoO109I	RGGNCCY	2 cut(s)	377, 886
EcoRI	GAATTC	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	373, 438, 765
EcoT14I	CCWWGG	1 cut(s)	895
EcoT22I	ATGCAT	1 cut(s)	812
ErhI	CCWWGG	1 cut(s)	895
FaqI	GGGAC	2 cut(s)	549, 741
FauI	CCCGC	1 cut(s)	701
FokI	GGATG	4 cut(s)	374, 385, 782, 830
GlaI	GCGC	2 cut(s)	314, 323
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	1 cut(s)	378
HapII	CCGG	3 cut(s)	226, 301, 847
HhaI	GCGC	2 cut(s)	315, 324
Hin6I	GCGC	2 cut(s)	313, 322
HinP1I	GCGC	2 cut(s)	313, 322
HincII	GTYRAC	1 cut(s)	196
HindII	GTYRAC	1 cut(s)	196
HinfI	GANTC	3 cut(s)	166, 541, 864
HpaII	CCGG	3 cut(s)	226, 301, 847
HphI	GGTGA	1 cut(s)	884
Hpy166II	GTNNAC	3 cut(s)	30, 189, 196
Hpy188I	TCNGA	5 cut(s)	205, 219, 425, 540, 686
Hpy188III	TCNNGA	2 cut(s)	173, 308
Hpy8I	GTNNAC	3 cut(s)	30, 189, 196
HpyAV	CCTTC	7 cut(s)	151, 157, 390, 591, 617, 776, 899
HpyCH4III	ACNGT	3 cut(s)	193, 200, 505
HpyCH4V	TGCA	4 cut(s)	429, 477, 587, 810
HpyF10VI	GCNNNNNNNGC	4 cut(s)	310, 319, 321, 593
HpyF3I	CTNAG	1 cut(s)	529
HspAI	GCGC	2 cut(s)	313, 322
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Kzo9I	GATC	3 cut(s)	222, 272, 460
LmnI	GCTCC	2 cut(s)	5, 310
LweI	GCATC	3 cut(s)	416, 650, 819
MalI	GATC	3 cut(s)	224, 274, 462
MboI	GATC	3 cut(s)	222, 272, 460
MboII	GAAGA	5 cut(s)	89, 232, 362, 680, 716
MfeI	CAATTG	2 cut(s)	254, 736
MflI	RGATCY	2 cut(s)	222, 460
MhlI	GDGCHC	1 cut(s)	745
MluCI	AATT	8 cut(s)	254, 277, 487, 599, 680, 731, 736, 816
MlyI	GAGTC	1 cut(s)	175
Mph1103I	ATGCAT	1 cut(s)	812
MroNI	GCCGGC	1 cut(s)	300
MroXI	GAANNNNTTC	1 cut(s)	633
MseI	TTAA	2 cut(s)	326, 365
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	3 cut(s)	226, 301, 847
MspR9I	CCNGG	4 cut(s)	375, 440, 767, 848
MunI	CAATTG	2 cut(s)	254, 736
Mva1269I	GAATGC	1 cut(s)	182
MvaI	CCWGG	3 cut(s)	375, 440, 767
MwoI	GCNNNNNNNGC	4 cut(s)	310, 319, 321, 593
NaeI	GCCGGC	1 cut(s)	302
NciI	CCSGG	1 cut(s)	848
NdeII	GATC	3 cut(s)	222, 272, 460
NgoMIV	GCCGGC	1 cut(s)	300
NlaIV	GGNNCC	1 cut(s)	462
NsiI	ATGCAT	1 cut(s)	812
PctI	GAATGC	1 cut(s)	182
PdiI	GCCGGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	541, 864
PleI	GAGTC	1 cut(s)	174
PpsI	GAGTC	1 cut(s)	174
PpuMI	RGGWCCY	1 cut(s)	886
Psp5II	RGGWCCY	1 cut(s)	886
Psp6I	CCWGG	3 cut(s)	373, 438, 765
PspGI	CCWGG	3 cut(s)	373, 438, 765
PspN4I	GGNNCC	1 cut(s)	462
PspPI	GGNCC	2 cut(s)	377, 886
PspPPI	RGGWCCY	1 cut(s)	886
PstI	CTGCAG	1 cut(s)	479
PsuI	RGATCY	2 cut(s)	222, 460
RsaI	GTAC	4 cut(s)	68, 188, 691, 829
RsaNI	GTAC	4 cut(s)	67, 187, 690, 828
SaqAI	TTAA	2 cut(s)	326, 365
Sau3AI	GATC	3 cut(s)	222, 272, 460
Sau96I	GGNCC	2 cut(s)	377, 886
SbfI	CCTGCAGG	1 cut(s)	479
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	4 cut(s)	375, 440, 767, 848
SdaI	CCTGCAGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	745
SetI	ASST	7 cut(s)	341, 414, 658, 805, 891, 897, 904
SfaNI	GCATC	3 cut(s)	416, 650, 819
SfcI	CTRYAG	2 cut(s)	475, 574
SinI	GGWCC	1 cut(s)	886
Sse8387I	CCTGCAGG	1 cut(s)	479
Sse9I	AATT	8 cut(s)	254, 277, 487, 599, 680, 731, 736, 816
SsiI	CCGC	5 cut(s)	72, 180, 208, 694, 881
StyD4I	CCNGG	4 cut(s)	373, 438, 765, 846
StyI	CCWWGG	1 cut(s)	895
TaaI	ACNGT	3 cut(s)	193, 200, 505
TaqI	TCGA	2 cut(s)	271, 813
TasI	AATT	8 cut(s)	254, 277, 487, 599, 680, 731, 736, 816
TatI	WGTACW	3 cut(s)	66, 186, 827
TfiI	GAWTC	2 cut(s)	541, 864
Tru1I	TTAA	2 cut(s)	326, 365
Tru9I	TTAA	2 cut(s)	326, 365
TscAI	CASTG	2 cut(s)	196, 644
TspDTI	ATGAA	2 cut(s)	735, 832
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	196, 644
VpaK11BI	GGWCC	1 cut(s)	886
XapI	RAATTY	3 cut(s)	277, 680, 816
XmnI	GAANNNNTTC	1 cut(s)	633
Zsp2I	ATGCAT	1 cut(s)	812

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.