Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

50498330 .. 50510750

Gene Structure 12421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG342100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1680 bp

ATGGGAGCAAATAGTCGTCCTGTTTTGTTTACTCTCTCTGCTCTCACTTGTCTTGTTATTCTAATGTACTCCGCTGAAGAAGTGAGAAGCCAAACTACTTGTCCAGTCTTCTTCTGTAATGACATAGTAGGTAGTGTCTCCTTCCCCTTCAAAAACACAAAACAGAGTCCTGAATGCGGATTGTACACTGTCAACTGTTCTGACAGCCATAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTTCAATTGGAAAGCATGAATCGATCAATTTCCGTTTATATCAATGACAGGCGGCTTCAGGAGCGCATAGAGCGCTTAAAAGGAGATAGCTGTGATGATGACGTTTTCAATGTTTTAAGTCTTCCCAACTCTCCTCCTGTCGTCCATCCACACACACACAACCTTACCCTGTTCAGATGCAACAAGACTCCTTACAAGGGTCCTAACTATGCCTGCACGAGTGTAAATCATATTTACTATACTGTATCAAATCATAGTTTAAATTGCTCAGCCATTCAGATCCCCATACGTCCACGTTTTCCTTCCAATGTCTATAATGCTTCTGCATTGACTGCTAAATTCTCCCTTCATTTTAACGAAGAATGTGATCAGTGCTATACTACTGGAGTTAATTGCTTGGATGACAATGGAGAATGGAAGTGTTTCCCCCCACCAGAAGATAAATGTCGGAATCAGAAGGGAGAATTCATTTGTGCCCGACCAGAAGGTAAATGCCAGGATGAGGAGGATGGCAAATGTGCCAAAGCAGGATCAGCCGGAAGTTCTTGGATGGCTACCGTCAGTACCGTGGCTGTTTTTATTTTATATGTCTTCACTCATCTTCTGCTTGTTTACTCCGCTGAGAGTTGTCCACCCTACTTCTGTAATGACAGAGTAGACCGCATCTACTTTCCCTTCAAAAGCATATCCCAGCGTCCAGAATGCGGGTTCTACACCGTTAATTGTTCTGACAGCCCTAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTCCAATTGGAAAAAATAAATGGATCGAGTTTCGTTTTTATCAATGACAGGCGGCTTCAGGAGCGCATAGAGCGCTTAAAAGGAGATAGCTGTGATGATGATGTTTTTAATGATTTAAGTCTTCCAGACCCTACTACCACCTTCTATACAGCCACAAACAACCTTACCCTGTTCAGATGCAACAACACCCTGGACAAAACTCCTTACTATGCCTGCAGCGGTGTTAATTATACTTACTATACTCTATCAAATGATAGTTTACATTGCTCAGCCATTCAGATTCCCATACTTCCAGATTCCCGTCCCAACGTCTATAGCCCTTCTGCATTGACTGCTAAATTCTCCCTTCAAGTGATATTTACCGATAAATGCTGGAATGACAATGGAGAATTGAAATGTGCCCCGCTTCGAGAAGATAAATGCTGGAATGAGAAGGGGCGATTCAAATGTGCCAAAGCAGATGTCAACCTCCCCGGAAATATAATTTATTTTCGAGGAAACTGTCTAAAGCCACCGACCAACAACCACCACGCCGCGCCGCCGACCAACGCCGAGCTCGATCCTCAGCTTGCCGATGCCTTCGATCTGCACAACGCCAAGCCCGACTCTTCAACCTTCGATCTGCAACGACGATCCCAACTCTCCAACAACGATGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

559

Amino Acids

63.1

Weight (kDa)

5.99

Isoelectric Point (pI)

51.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	903
AccII	CGCG	1 cut(s)	1556
AclWI	GGATC	7 cut(s)	214, 520, 784, 988, 1051, 1574, 1647
AcsI	RAATTY	3 cut(s)	584, 710, 1358
AcuI	CTGAAG	3 cut(s)	96, 287, 1061
AfaI	GTAC	3 cut(s)	68, 185, 811
AfeI	AGCGCT	2 cut(s)	320, 1094
AfiI	CCNNNNNNNGG	4 cut(s)	176, 443, 748, 950
AgsI	TTSAA	8 cut(s)	151, 251, 355, 925, 1370, 1414, 1465, 1632
AjnI	CCWGG	2 cut(s)	741, 1209
AluBI	AGCT	4 cut(s)	336, 1110, 1576, 1588
AluI	AGCT	4 cut(s)	336, 1110, 1576, 1588
Alw21I	GWGCWC	1 cut(s)	1578
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	7 cut(s)	214, 520, 784, 988, 1051, 1574, 1647
Aor51HI	AGCGCT	2 cut(s)	320, 1094
ApeKI	GCWGC	1 cut(s)	1236
ApoI	RAATTY	3 cut(s)	584, 710, 1358
ArsI	GACNNNNNNTTYG	4 cut(s)	85, 117, 1467, 1499
Asp700I	GAANNNNTTC	1 cut(s)	668
AspLEI	GCGC	5 cut(s)	312, 321, 1086, 1095, 1558
AspS9I	GGNCC	1 cut(s)	446
AsuC2I	CCSGG	1 cut(s)	1494
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	2 cut(s)	724, 1423
BanII	GRGCYC	1 cut(s)	1578
BarI	GAAGNNNNNNTAC	2 cut(s)	79, 111
BauI	CACGAG	1 cut(s)	463
BbsI	GAAGAC	4 cut(s)	100, 359, 829, 1133
Bbv12I	GWGCWC	1 cut(s)	1578
BbvCI	CCTCAGC	1 cut(s)	1584
BbvI	GCAGC	1 cut(s)	1248
BccI	CCATC	5 cut(s)	227, 399, 749, 790, 1001
BciT130I	CCWGG	2 cut(s)	743, 1211
BciVI	GTATCC	2 cut(s)	233, 1007
BclI	TGATCA	1 cut(s)	613
BcnI	CCSGG	1 cut(s)	1494
BcoDI	GTCTC	1 cut(s)	142
BfmI	CTRYAG	2 cut(s)	1234, 1333
BfoI	RGCGCY	2 cut(s)	322, 1096
BfuI	GTATCC	2 cut(s)	233, 1007
BisI	GCNGC	5 cut(s)	299, 1073, 1237, 1554, 1559
BlpI	GCTNAGC	2 cut(s)	514, 1288
BlsI	GCNGC	5 cut(s)	300, 1074, 1238, 1555, 1560
Bme1390I	CCNGG	3 cut(s)	743, 1211, 1494
Bme18I	GGWCC	1 cut(s)	446
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	447, 1022
BmrFI	CCNGG	3 cut(s)	743, 1211, 1494
BmsI	GCATC	4 cut(s)	413, 918, 1187, 1585
BpiI	GAAGAC	4 cut(s)	100, 359, 829, 1133
BpmI	CTGGAG	1 cut(s)	651
Bpu10I	CCTNAGC	1 cut(s)	1584
Bpu1102I	GCTNAGC	2 cut(s)	514, 1288
BpuMI	CCSGG	1 cut(s)	1494
Bsa29I	ATCGAT	1 cut(s)	268
BsaJI	CCNNGG	3 cut(s)	813, 1209, 1492
Bsc4I	CCNNNNNNNGG	4 cut(s)	176, 443, 748, 950
Bse1I	ACTGG	4 cut(s)	104, 248, 634, 1022
Bse3DI	GCAATG	1 cut(s)	1282
BseBI	CCWGG	2 cut(s)	743, 1211
BseCI	ATCGAT	1 cut(s)	268
BseDI	CCNNGG	3 cut(s)	813, 1209, 1492
BseGI	GGATG	5 cut(s)	391, 652, 751, 760, 801
BseLI	CCNNNNNNNGG	4 cut(s)	176, 443, 748, 950
BseMI	GCAATG	1 cut(s)	1282
BseMII	CTCAG	4 cut(s)	528, 858, 1302, 1598
BseNI	ACTGG	4 cut(s)	104, 248, 634, 1022
BseRI	GAGGAG	2 cut(s)	369, 764
BseSI	GKGCMC	2 cut(s)	724, 1423
BseXI	GCAGC	1 cut(s)	1248
BseYI	CCCAGC	1 cut(s)	936
BsgI	GTGCAG	2 cut(s)	445, 1592
Bsh1236I	CGCG	1 cut(s)	1556
BshVI	ATCGAT	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	1578
BsiSI	CCGG	2 cut(s)	783, 1494
BslFI	GGGAC	1 cut(s)	1308
BslI	CCNNNNNNNGG	4 cut(s)	176, 443, 748, 950
BsmAI	GTCTC	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	1308
BsmI	GAATGC	2 cut(s)	179, 953
Bsp1286I	GDGCHC	3 cut(s)	724, 1423, 1578
Bsp1407I	TGTACA	1 cut(s)	183
Bsp1720I	GCTNAGC	2 cut(s)	514, 1288
BspCNI	CTCAG	4 cut(s)	527, 859, 1301, 1597
BspDI	ATCGAT	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	1556
BspLI	GGNNCC	2 cut(s)	447, 1022
BspMAI	CTGCAG	1 cut(s)	1238
BspPI	GGATC	7 cut(s)	214, 520, 784, 988, 1051, 1574, 1647
BsrDI	GCAATG	1 cut(s)	1282
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	4 cut(s)	104, 248, 634, 1022
BssECI	CCNNGG	3 cut(s)	813, 1209, 1492
BssSI	CACGAG	1 cut(s)	463
Bst2BI	CACGAG	1 cut(s)	463
Bst2UI	CCWGG	2 cut(s)	743, 1211
Bst4CI	ACNGT	7 cut(s)	190, 197, 490, 805, 814, 964, 1523
Bst6I	CTCTTC	1 cut(s)	1633
BstAPI	GCANNNNNTGC	2 cut(s)	578, 1352
BstAUI	TGTACA	1 cut(s)	183
BstC8I	GCNNGC	3 cut(s)	460, 1234, 1590
BstDEI	CTNAG	4 cut(s)	514, 867, 1288, 1584
BstDSI	CCRYGG	1 cut(s)	813
BstF5I	GGATG	5 cut(s)	391, 652, 751, 760, 801
BstFNI	CGCG	1 cut(s)	1556
BstH2I	RGCGCY	2 cut(s)	322, 1096
BstHHI	GCGC	5 cut(s)	312, 321, 1086, 1095, 1558
BstMAI	GTCTC	1 cut(s)	142
BstMWI	GCNNNNNNNGC	9 cut(s)	307, 316, 318, 578, 779, 1081, 1090, 1092, 1352
BstNI	CCWGG	2 cut(s)	743, 1211
BstSCI	CCNGG	3 cut(s)	741, 1209, 1492
BstSFI	CTRYAG	2 cut(s)	1234, 1333
BstSLI	GKGCMC	2 cut(s)	724, 1423
BstUI	CGCG	1 cut(s)	1556
BstV1I	GCAGC	1 cut(s)	1248
BstV2I	GAAGAC	4 cut(s)	100, 359, 829, 1133
BstX2I	RGATCY	3 cut(s)	219, 525, 993
BstYI	RGATCY	3 cut(s)	219, 525, 993
Bsu15I	ATCGAT	1 cut(s)	268
BsuI	GTATCC	2 cut(s)	233, 1007
BsuTUI	ATCGAT	1 cut(s)	268
BtgI	CCRYGG	1 cut(s)	813
BtsCI	GGATG	5 cut(s)	391, 652, 751, 760, 801
BtsIMutI	CAGTG	2 cut(s)	186, 623
Cac8I	GCNNGC	3 cut(s)	460, 1234, 1590
CfoI	GCGC	5 cut(s)	312, 321, 1086, 1095, 1558
Cfr13I	GGNCC	1 cut(s)	446
ClaI	ATCGAT	1 cut(s)	268
CseI	GACGC	1 cut(s)	929
Csp6I	GTAC	3 cut(s)	67, 184, 810
CviAII	CATG	1 cut(s)	262
CviQI	GTAC	3 cut(s)	67, 184, 810
DdeI	CTNAG	4 cut(s)	514, 867, 1288, 1584
DraI	TTTAAA	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	1633
EarI	CTCTTC	1 cut(s)	1633
Ecl136II	GAGCTC	1 cut(s)	1576
Eco24I	GRGCYC	1 cut(s)	1578
Eco47I	GGWCC	1 cut(s)	446
Eco47III	AGCGCT	2 cut(s)	320, 1094
Eco53kI	GAGCTC	1 cut(s)	1576
Eco57I	CTGAAG	3 cut(s)	96, 287, 1061
EcoICRI	GAGCTC	1 cut(s)	1576
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	710
EcoRII	CCWGG	2 cut(s)	741, 1209
EcoT38I	GRGCYC	1 cut(s)	1578
FaeI	CATG	1 cut(s)	265
FaqI	GGGAC	1 cut(s)	1308
FatI	CATG	1 cut(s)	261
FauI	CCCGC	2 cut(s)	944, 1431
FbaI	TGATCA	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	903
Fnu4HI	GCNGC	5 cut(s)	299, 1073, 1237, 1554, 1559
FokI	GGATG	5 cut(s)	378, 659, 758, 767, 808
FriOI	GRGCYC	1 cut(s)	1578
Fsp4HI	GCNGC	5 cut(s)	299, 1073, 1237, 1554, 1559
GlaI	GCGC	5 cut(s)	311, 320, 1085, 1094, 1557
GluI	GCNGC	5 cut(s)	299, 1073, 1237, 1554, 1559
GsaI	CCCAGC	1 cut(s)	940
GsuI	CTGGAG	1 cut(s)	651
HaeII	RGCGCY	2 cut(s)	322, 1096
HapII	CCGG	2 cut(s)	783, 1494
HgaI	GACGC	1 cut(s)	929
HhaI	GCGC	5 cut(s)	312, 321, 1086, 1095, 1558
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	5 cut(s)	310, 319, 1084, 1093, 1556
HinP1I	GCGC	5 cut(s)	310, 319, 1084, 1093, 1556
HincII	GTYRAC	2 cut(s)	193, 1486
HindII	GTYRAC	2 cut(s)	193, 1486
HinfI	GANTC	8 cut(s)	166, 265, 433, 697, 1300, 1316, 1461, 1625
HpaII	CCGG	2 cut(s)	783, 1494
Hpy166II	GTNNAC	9 cut(s)	30, 186, 193, 539, 859, 878, 904, 1280, 1486
Hpy188III	TCNNGA	7 cut(s)	170, 305, 944, 1079, 1145, 1313, 1430
Hpy8I	GTNNAC	9 cut(s)	30, 186, 193, 539, 859, 878, 904, 1280, 1486
Hpy99I	CGWCG	1 cut(s)	1653
HpyCH4III	ACNGT	7 cut(s)	190, 197, 490, 805, 814, 964, 1523
HpyCH4IV	ACGT	4 cut(s)	348, 535, 541, 1329
HpyCH4V	TGCA	8 cut(s)	426, 462, 572, 1200, 1236, 1346, 1609, 1645
HpyF10VI	GCNNNNNNNGC	9 cut(s)	307, 316, 318, 578, 779, 1081, 1090, 1092, 1352
HpyF3I	CTNAG	4 cut(s)	514, 867, 1288, 1584
HpySE526I	ACGT	4 cut(s)	348, 535, 541, 1329
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	5 cut(s)	310, 319, 1084, 1093, 1556
Ksp22I	TGATCA	1 cut(s)	613
LmnI	GCTCC	3 cut(s)	5, 307, 1081
Lsp1109I	GCAGC	1 cut(s)	1248
LweI	GCATC	4 cut(s)	413, 918, 1187, 1585
MaeII	ACGT	4 cut(s)	348, 535, 541, 1329
MfeI	CAATTG	2 cut(s)	251, 1025
MflI	RGATCY	3 cut(s)	219, 525, 993
MhlI	GDGCHC	3 cut(s)	724, 1423, 1578
MlyI	GAGTC	3 cut(s)	175, 427, 1619
MmeI	TCCRAC	3 cut(s)	247, 674, 1021
MnlI	CCTC	8 cut(s)	230, 390, 742, 745, 1004, 1499, 1508, 1593
MroXI	GAANNNNTTC	1 cut(s)	668
MspA1I	CMGCKG	3 cut(s)	74, 866, 1239
MspI	CCGG	2 cut(s)	783, 1494
MspR9I	CCNGG	3 cut(s)	743, 1211, 1494
MunI	CAATTG	2 cut(s)	251, 1025
Mva1269I	GAATGC	2 cut(s)	179, 953
MvaI	CCWGG	2 cut(s)	743, 1211
MvnI	CGCG	1 cut(s)	1556
MwoI	GCNNNNNNNGC	9 cut(s)	307, 316, 318, 578, 779, 1081, 1090, 1092, 1352
NciI	CCSGG	1 cut(s)	1494
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	2 cut(s)	447, 1022
NmeAIII	GCCGAG	1 cut(s)	1597
PcsI	WCGNNNNNNNCGW	2 cut(s)	1575, 1620
PctI	GAATGC	2 cut(s)	179, 953
PdmI	GAANNNNTTC	1 cut(s)	668
PfeI	GAWTC	5 cut(s)	265, 697, 1300, 1316, 1461
PkrI	GCNGC	5 cut(s)	300, 1074, 1238, 1555, 1560
PleI	GAGTC	3 cut(s)	174, 427, 1619
PpsI	GAGTC	3 cut(s)	174, 427, 1619
PpuMI	RGGWCCY	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	1578
Psp5II	RGGWCCY	1 cut(s)	446
Psp6I	CCWGG	2 cut(s)	741, 1209
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	741, 1209
PspN4I	GGNNCC	2 cut(s)	447, 1022
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	1238
PsuI	RGATCY	3 cut(s)	219, 525, 993
RsaI	GTAC	3 cut(s)	68, 185, 811
RsaNI	GTAC	3 cut(s)	67, 184, 810
SacI	GAGCTC	1 cut(s)	1578
SatI	GCNGC	5 cut(s)	299, 1073, 1237, 1554, 1559
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	3 cut(s)	175, 427, 1619
ScrFI	CCNGG	3 cut(s)	743, 1211, 1494
SduI	GDGCHC	3 cut(s)	724, 1423, 1578
SfaNI	GCATC	4 cut(s)	413, 918, 1187, 1585
SfcI	CTRYAG	2 cut(s)	1234, 1333
SinI	GGWCC	1 cut(s)	446
SstI	GAGCTC	1 cut(s)	1578
StyD4I	CCNGG	3 cut(s)	741, 1209, 1492
TaaI	ACNGT	7 cut(s)	190, 197, 490, 805, 814, 964, 1523
TaiI	ACGT	4 cut(s)	351, 538, 544, 1332
TaqI	TCGA	7 cut(s)	268, 1046, 1429, 1513, 1578, 1602, 1638
TatI	WGTACW	2 cut(s)	66, 183
TauI	GCSGC	4 cut(s)	301, 1075, 1556, 1561
TfiI	GAWTC	5 cut(s)	265, 697, 1300, 1316, 1461
TscAI	CASTG	2 cut(s)	193, 623
TseI	GCWGC	1 cut(s)	1236
TspDTI	ATGAA	3 cut(s)	278, 584, 703
TspGWI	ACGGA	1 cut(s)	268
TspRI	CASTG	2 cut(s)	193, 623
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	3 cut(s)	584, 710, 1358
XcmI	CCANNNNNNNNNTGG	2 cut(s)	230, 1004
XmiI	GTMKAC	1 cut(s)	903
XmnI	GAANNNNTTC	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.