Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005783.1

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Reverse (-)

28534 .. 29253

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005783.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

atgagcattgccatagaaactgccgatgcactgtcttacctccatgtttctgatattgtgcatcgtgatgtgaagactaccaacattctccttgacaacaatttctgtgtaaaagttgcagattttgggctctcgcggctttttccccttgatgtcactcatgtttctactgcgccacaagggactcctggttatgttgacccagagtatcaccagtgttaccagctaactagtaagagtgatgtttatagttttggagttgtcctcattgagctgatatcatctctgccagcagttgatataactaggcataggcatgagatcaatttgtctaacatagccataaacaagattcaaagaggtttatacagtgagctggttgattcatgtcttgggtttgagtcggatcatgaagttaaaaggatgacaattgcagtggcagagttggctttccaatgtttgcagcaggacaataatgcaaggcctaccatgtctgaggttttggaaactttgcagatgattgaaagtggaaaagatgttccagagaatttgaaggaggactttgttgatgttgagataagaaagagtatacagccaccaccttcaccagaatgtgatgagcttcagttgttgaagaacatgaggccaccattctcaccaacttccgtgacccaaaactggcctagcactaggtctaatacacctaatgctagttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

239

Amino Acids

26.72

Weight (kDa)

4.87

Isoelectric Point (pI)

56.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	1 cut(s)	136
AciI	CCGC	1 cut(s)	136
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	547
AcuI	CTGAAG	1 cut(s)	608
AfiI	CCNNNNNNNGG	1 cut(s)	678
AgsI	TTSAA	4 cut(s)	356, 524, 553, 634
AhlI	ACTAGT	1 cut(s)	230
AjnI	CCWGG	1 cut(s)	187
AloI	GAACNNNNNNTCC	2 cut(s)	522, 554
AluBI	AGCT	4 cut(s)	226, 274, 376, 622
AluI	AGCT	4 cut(s)	226, 274, 376, 622
AlwI	GGATC	1 cut(s)	414
AoxI	GGCC	3 cut(s)	482, 644, 680
ApeKI	GCWGC	1 cut(s)	463
ApoI	RAATTY	1 cut(s)	547
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	3 cut(s)	203, 597, 648
BanII	GRGCYC	1 cut(s)	132
BbsI	GAAGAC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	189
BcuI	ACTAGT	1 cut(s)	230
BfaI	CTAG	5 cut(s)	231, 306, 684, 690, 711
BisI	GCNGC	2 cut(s)	137, 464
BlsI	GCNGC	2 cut(s)	138, 465
Bme1390I	CCNGG	1 cut(s)	189
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	2 cut(s)	16, 70
BpiI	GAAGAC	1 cut(s)	80
BplI	GAGNNNNNCTC	2 cut(s)	249, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	678
Bse1I	ACTGG	2 cut(s)	214, 683
Bse3DI	GCAATG	1 cut(s)	6
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	678
BseMI	GCAATG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	486
BseNI	ACTGG	2 cut(s)	214, 683
BseXI	GCAGC	1 cut(s)	475
Bsh1236I	CGCG	1 cut(s)	136
BshFI	GGCC	3 cut(s)	484, 646, 682
BslFI	GGGAC	1 cut(s)	196
BslI	CCNNNNNNNGG	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	196
BsnI	GGCC	3 cut(s)	484, 646, 682
Bsp1286I	GDGCHC	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	321, 406
BspACI	CCGC	1 cut(s)	136
BspANI	GGCC	3 cut(s)	484, 646, 682
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	1 cut(s)	136
BspHI	TCATGA	1 cut(s)	409
BspPI	GGATC	1 cut(s)	414
BsrDI	GCAATG	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	214, 683
BssMI	GATC	2 cut(s)	321, 406
BssNAI	GTATAC	1 cut(s)	590
Bst1107I	GTATAC	1 cut(s)	590
Bst2UI	CCWGG	1 cut(s)	189
Bst4CI	ACNGT	2 cut(s)	33, 371
BstC8I	GCNNGC	1 cut(s)	291
BstDEI	CTNAG	1 cut(s)	495
BstF5I	GGATG	1 cut(s)	429
BstFNI	CGCG	1 cut(s)	136
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	324, 409
BstMBI	GATC	2 cut(s)	321, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	136, 446
BstNI	CCWGG	1 cut(s)	189
BstSCI	CCNGG	1 cut(s)	187
BstUI	CGCG	1 cut(s)	136
BstV1I	GCAGC	1 cut(s)	475
BstV2I	GAAGAC	1 cut(s)	80
BstZ17I	GTATAC	1 cut(s)	590
BsuRI	GGCC	3 cut(s)	484, 646, 682
BtsCI	GGATG	1 cut(s)	429
BtsI	GCAGTG	1 cut(s)	441
BtsIMutI	CAGTG	4 cut(s)	29, 221, 376, 441
Cac8I	GCNNGC	1 cut(s)	291
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	1 cut(s)	175
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	7 cut(s)	44, 161, 317, 387, 410, 490, 640
DdeI	CTNAG	1 cut(s)	495
DpnI	GATC	2 cut(s)	323, 408
DpnII	GATC	2 cut(s)	321, 406
Eco147I	AGGCCT	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	132
Eco32I	GATATC	1 cut(s)	279
Eco57I	CTGAAG	1 cut(s)	608
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	279
EcoT38I	GRGCYC	1 cut(s)	132
FaeI	CATG	7 cut(s)	47, 164, 320, 390, 413, 493, 643
FalI	AAGNNNNNCTT	2 cut(s)	545, 577
FaqI	GGGAC	1 cut(s)	196
FatI	CATG	7 cut(s)	43, 160, 316, 386, 409, 489, 639
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	137, 464
FokI	GGATG	1 cut(s)	436
FriOI	GRGCYC	1 cut(s)	132
Fsp4HI	GCNGC	2 cut(s)	137, 464
FspBI	CTAG	5 cut(s)	231, 306, 684, 690, 711
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	2 cut(s)	137, 464
HaeIII	GGCC	3 cut(s)	484, 646, 682
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	7 cut(s)	47, 164, 320, 390, 413, 493, 643
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	4 cut(s)	184, 352, 383, 401
HphI	GGTGA	3 cut(s)	203, 597, 648
Hpy166II	GTNNAC	2 cut(s)	199, 590
Hpy188I	TCNGA	3 cut(s)	52, 406, 496
Hpy188III	TCNNGA	3 cut(s)	65, 410, 542
Hpy8I	GTNNAC	2 cut(s)	199, 590
HpyAV	CCTTC	2 cut(s)	547, 612
HpyCH4III	ACNGT	2 cut(s)	33, 371
HpyCH4V	TGCA	7 cut(s)	29, 61, 119, 434, 463, 479, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	136, 446
HpyF3I	CTNAG	1 cut(s)	495
Hsp92II	CATG	7 cut(s)	47, 164, 320, 390, 413, 493, 643
HspAI	GCGC	1 cut(s)	173
Kzo9I	GATC	2 cut(s)	321, 406
Lsp1109I	GCAGC	1 cut(s)	475
LweI	GCATC	2 cut(s)	16, 70
MaeI	CTAG	5 cut(s)	231, 306, 684, 690, 711
MaeIII	GTNAC	3 cut(s)	154, 218, 667
MalI	GATC	2 cut(s)	323, 408
MboI	GATC	2 cut(s)	321, 406
MboII	GAAGA	2 cut(s)	85, 646
MfeI	CAATTG	1 cut(s)	429
MhlI	GDGCHC	1 cut(s)	132
MluCI	AATT	4 cut(s)	100, 325, 429, 547
MlyI	GAGTC	2 cut(s)	178, 410
MmeI	TCCRAC	1 cut(s)	384
MnlI	CCTC	6 cut(s)	50, 275, 353, 490, 550, 636
MseI	TTAA	1 cut(s)	417
MslI	CAYNNNNRTG	3 cut(s)	66, 315, 610
MspR9I	CCNGG	1 cut(s)	189
MunI	CAATTG	1 cut(s)	429
MvaI	CCWGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	136
MwoI	GCNNNNNNNGC	2 cut(s)	136, 446
NdeII	GATC	2 cut(s)	321, 406
NlaIII	CATG	7 cut(s)	47, 164, 320, 390, 413, 493, 643
NmuCI	GTSAC	2 cut(s)	154, 667
PagI	TCATGA	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	484
PfeI	GAWTC	2 cut(s)	352, 383
PkrI	GCNGC	2 cut(s)	138, 465
PleI	GAGTC	2 cut(s)	178, 409
PpsI	GAGTC	2 cut(s)	178, 409
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
RseI	CAYNNNNRTG	3 cut(s)	66, 315, 610
SaqAI	TTAA	1 cut(s)	417
SatI	GCNGC	2 cut(s)	137, 464
Sau3AI	GATC	2 cut(s)	321, 406
SchI	GAGTC	2 cut(s)	178, 410
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	1 cut(s)	132
SfaNI	GCATC	2 cut(s)	16, 70
SmiMI	CAYNNNNRTG	3 cut(s)	66, 315, 610
SpeI	ACTAGT	1 cut(s)	230
Sse9I	AATT	4 cut(s)	100, 325, 429, 547
SseBI	AGGCCT	1 cut(s)	484
SsiI	CCGC	1 cut(s)	136
SspMI	CTAG	5 cut(s)	231, 306, 684, 690, 711
StuI	AGGCCT	1 cut(s)	484
StyD4I	CCNGG	1 cut(s)	187
TaaI	ACNGT	2 cut(s)	33, 371
TasI	AATT	4 cut(s)	100, 325, 429, 547
TauI	GCSGC	1 cut(s)	139
TfiI	GAWTC	2 cut(s)	352, 383
Tru1I	TTAA	1 cut(s)	417
Tru9I	TTAA	1 cut(s)	417
TscAI	CASTG	4 cut(s)	36, 221, 376, 441
TseFI	GTSAC	2 cut(s)	154, 667
TseI	GCWGC	1 cut(s)	463
Tsp45I	GTSAC	2 cut(s)	154, 667
TspDTI	ATGAA	2 cut(s)	375, 426
TspGWI	ACGGA	1 cut(s)	655
TspRI	CASTG	4 cut(s)	36, 221, 376, 441
XapI	RAATTY	1 cut(s)	547
XmiI	GTMKAC	1 cut(s)	589
XspI	CTAG	5 cut(s)	231, 306, 684, 690, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.