Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001947

Physical Location & Seq

Genomic Coordinates Forward (+)

50345991 .. 50346797

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG340700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGCTACCGTGGCTTTGTTTGTTTTCTGTGTTTTCACTCATCTTATCGTTCTTCACTCTGCTGTAGCGACAAGCGAAACAACTTGTCCACCCTACGTCTGTAATGTGAGAGTAGGCAGCATCTACTTCCCCTTCAAAAGCATAACACAGAGTCCTGAATGCGGATTATACACTGTCAACTGTGTTGACCCCCATAATCCGAAGATCCAACTCAAAGATGGAGGATACTGGTTTAAATTCGAAAGCATCAGTCGAACACCCTCCATTTTTATCAATGACGGGGAGCTTCAGAAGCGCATAGAGAACTTAAAAGGAGATACCTGTGATGATGATGTTTTCAATGCTTTAAGTCTTCCAGGCCCTACTCCCATCGTTAATACATCCACAACCAACCTTACACTCTTCAGATGCAACAACACCCAGGAGAAAACTCCTTTCAAGGATCCTAACTTTGCCTGCAAGAGTGTAAATTATATTTATTATACTGTATCAAATGATAGTTTGTGCTCACCCATCCAAATCCCCATACATCCCCATCCACATTCCCGCCCCAATGTCTATAAACTTTCTGCATTGACTGCTAAATTCCCCCTTCTACTGCAATTTACCGAAGAATGTAATCATTGCTATACTAGCAATGGTAAATGCTTGGTTGACAATGGAAAATTCAAATGTGCCAAAGCAGGTAAATGCATCGAAATTTATGTGCATAAAAGTAGATGCTTCCTGCACTTACATCACCGGTTGTCTTGCTCTGTCGTGCCATACTCCAATTCCTTTCCTCCAGCGATATTCCTGAGAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

268

Amino Acids

30.14

Weight (kDa)

8.64

Isoelectric Point (pI)

36.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25390 AT1G25390
fragaria_vesca	FvH4_4g26830 FvH4_4g26840 FvH4_4g26841 FvH4_4g26841
malus_domestica	MD13G1036100.v1.1 MD16G1037800.v1.1 MD16G1038800.v1.1
prunus_persica	Prupe.1G315200_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1 Prupe.1G315900_v2.0.a1
pyrus_communis	pycom13g03150
rosa_chinensis	RchiOBHm_Chr4g0434491 RchiOBHm_Chr4g0434531 RchiOBHm_Chr4g0434541 RchiOBHm_Chr4g0434651
rosa_laevigata	RLG00000006663 RLG00000006664 RLG00000006665
rosa_multiflora	Rmu_co8505535.1_g000001 Rmu_sc0005783.1_g000005 Rmu_sc0005783.1_g000006 Rmu_sc0005783.1_g000008 Rmu_sc0005899.1_g000015 Rmu_sc0008439.1_g000007
rosa_roxburghii	Rroxscaffold_5G00375850
rosa_rugosa	Rorug04G0277200 Rorug04G0277200 Rorug04G0277200
rosa_samantha	Rh4AG333000 Rh4AG333900 Rh4BG340700 Rh4BG340800 Rh4BG341100 Rh4BG341600 Rh4BG341900 Rh4BG342100 Rh4BG342300 Rh4DG336000
rosa_wichuraiana	Rw4G028860 Rw4G028870 Rw4G028880 Rw4G028890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	674
AciI	CCGC	2 cut(s)	162, 547
AclWI	GGATC	3 cut(s)	199, 437, 450
AcsI	RAATTY	4 cut(s)	236, 584, 665, 699
AcuI	CTGAAG	2 cut(s)	272, 388
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgeI	ACCGGT	1 cut(s)	741
AgsI	TTSAA	4 cut(s)	136, 340, 439, 670
AjnI	CCWGG	2 cut(s)	355, 420
AluBI	AGCT	1 cut(s)	286
AluI	AGCT	1 cut(s)	286
Alw21I	GWGCWC	1 cut(s)	509
AlwI	GGATC	3 cut(s)	199, 437, 450
AoxI	GGCC	1 cut(s)	358
ApeKI	GCWGC	1 cut(s)	117
ApoI	RAATTY	4 cut(s)	236, 584, 665, 699
AsiGI	ACCGGT	1 cut(s)	741
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	501, 731
AsuII	TTCGAA	1 cut(s)	240
BamHI	GGATCC	1 cut(s)	442
BbsI	GAAGAC	1 cut(s)	344
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	4 cut(s)	212, 377, 521, 543
BciT130I	CCWGG	2 cut(s)	357, 422
BciVI	GTATCC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	633
BfmI	CTRYAG	1 cut(s)	63
BfuAI	ACCTGC	1 cut(s)	674
BfuI	GTATCC	1 cut(s)	218
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	357, 422
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	2 cut(s)	357, 422
BmsI	GCATC	5 cut(s)	129, 255, 398, 702, 710
BpiI	GAAGAC	1 cut(s)	344
BpmI	CTGGAG	1 cut(s)	768
Bpu14I	TTCGAA	1 cut(s)	240
BsaJI	CCNNGG	2 cut(s)	9, 420
BsaWI	WCCGGW	1 cut(s)	741
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	741
Bse1I	ACTGG	1 cut(s)	233
Bse3DI	GCAATG	2 cut(s)	622, 643
BseBI	CCWGG	2 cut(s)	357, 422
BseDI	CCNNGG	2 cut(s)	9, 420
BseGI	GGATG	4 cut(s)	380, 513, 529, 535
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	2 cut(s)	622, 643
BseMII	CTCAG	1 cut(s)	788
BseNI	ACTGG	1 cut(s)	233
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	713
BshFI	GGCC	1 cut(s)	360
BshTI	ACCGGT	1 cut(s)	741
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	742
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	360
Bsp119I	TTCGAA	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	509
Bsp143I	GATC	2 cut(s)	204, 442
BspACI	CCGC	2 cut(s)	162, 547
BspANI	GGCC	1 cut(s)	360
BspCNI	CTCAG	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	444
BspMI	ACCTGC	1 cut(s)	674
BspPI	GGATC	3 cut(s)	199, 437, 450
BspT104I	TTCGAA	1 cut(s)	240
BsrDI	GCAATG	2 cut(s)	622, 643
BsrFI	RCCGGY	1 cut(s)	741
BsrI	ACTGG	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	741
BssECI	CCNNGG	2 cut(s)	9, 420
BssMI	GATC	2 cut(s)	204, 442
Bst2UI	CCWGG	2 cut(s)	357, 422
Bst4CI	ACNGT	4 cut(s)	10, 175, 182, 487
Bst6I	CTCTTC	1 cut(s)	407
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBI	TTCGAA	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	1 cut(s)	797
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	380, 513, 529, 535
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	2 cut(s)	207, 445
BstMBI	GATC	2 cut(s)	204, 442
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 292, 578, 633
BstNI	CCWGG	2 cut(s)	357, 422
BstSCI	CCNGG	2 cut(s)	355, 420
BstSFI	CTRYAG	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	344
BstX2I	RGATCY	2 cut(s)	204, 442
BstYI	RGATCY	2 cut(s)	204, 442
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	360
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	380, 513, 529, 535
BtsIMutI	CAGTG	1 cut(s)	171
BveI	ACCTGC	1 cut(s)	674
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	359
CspAI	ACCGGT	1 cut(s)	741
CviJI	RGCY	4 cut(s)	5, 14, 286, 360
CviKI_1	RGCY	4 cut(s)	5, 14, 286, 360
DdeI	CTNAG	1 cut(s)	797
DpnI	GATC	2 cut(s)	206, 444
DpnII	GATC	2 cut(s)	204, 442
DraI	TTTAAA	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	407
EarI	CTCTTC	1 cut(s)	407
Eco57I	CTGAAG	2 cut(s)	272, 388
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	2 cut(s)	355, 420
EcoT22I	ATGCAT	1 cut(s)	695
FauI	CCCGC	1 cut(s)	554
Fnu4HI	GCNGC	1 cut(s)	118
FokI	GGATG	4 cut(s)	367, 500, 516, 522
Fsp4HI	GCNGC	1 cut(s)	118
FspBI	CTAG	1 cut(s)	633
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	768
HaeIII	GGCC	1 cut(s)	360
HapII	CCGG	1 cut(s)	742
HhaI	GCGC	1 cut(s)	297
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HincII	GTYRAC	3 cut(s)	178, 187, 655
HindII	GTYRAC	3 cut(s)	178, 187, 655
HinfI	GANTC	1 cut(s)	151
HpaII	CCGG	1 cut(s)	742
HphI	GGTGA	2 cut(s)	501, 731
Hpy166II	GTNNAC	4 cut(s)	89, 178, 187, 655
Hpy188I	TCNGA	3 cut(s)	201, 291, 407
Hpy188III	TCNNGA	2 cut(s)	155, 796
Hpy8I	GTNNAC	4 cut(s)	89, 178, 187, 655
HpyAV	CCTTC	2 cut(s)	142, 602
HpyCH4III	ACNGT	4 cut(s)	10, 175, 182, 487
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	7 cut(s)	411, 459, 572, 601, 693, 709, 730
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 292, 578, 633
HpyF3I	CTNAG	1 cut(s)	797
HpySE526I	ACGT	1 cut(s)	96
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	2 cut(s)	204, 442
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	5 cut(s)	129, 255, 398, 702, 710
MaeI	CTAG	1 cut(s)	633
MaeII	ACGT	1 cut(s)	96
MalI	GATC	2 cut(s)	206, 444
MboI	GATC	2 cut(s)	204, 442
MboII	GAAGA	5 cut(s)	44, 214, 344, 394, 623
MflI	RGATCY	2 cut(s)	204, 442
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	7 cut(s)	236, 469, 584, 602, 665, 699, 772
MlyI	GAGTC	1 cut(s)	160
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	215, 271, 792
Mph1103I	ATGCAT	1 cut(s)	695
MseI	TTAA	4 cut(s)	234, 308, 347, 375
MspI	CCGG	1 cut(s)	742
MspR9I	CCNGG	2 cut(s)	357, 422
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	2 cut(s)	357, 422
MwoI	GCNNNNNNNGC	4 cut(s)	11, 292, 578, 633
NdeII	GATC	2 cut(s)	204, 442
NlaIV	GGNNCC	1 cut(s)	444
NsiI	ATGCAT	1 cut(s)	695
NspV	TTCGAA	1 cut(s)	240
PctI	GAATGC	1 cut(s)	164
PinAI	ACCGGT	1 cut(s)	741
PkrI	GCNGC	1 cut(s)	119
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	355, 420
PspGI	CCWGG	2 cut(s)	355, 420
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	204, 442
SaqAI	TTAA	4 cut(s)	234, 308, 347, 375
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	2 cut(s)	204, 442
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	2 cut(s)	357, 422
SduI	GDGCHC	1 cut(s)	509
SetI	ASST	5 cut(s)	99, 288, 323, 396, 688
SfaNI	GCATC	5 cut(s)	129, 255, 398, 702, 710
SfcI	CTRYAG	1 cut(s)	63
SfuI	TTCGAA	1 cut(s)	240
Sse9I	AATT	7 cut(s)	236, 469, 584, 602, 665, 699, 772
SsiI	CCGC	2 cut(s)	162, 547
SspMI	CTAG	1 cut(s)	633
StyD4I	CCNGG	2 cut(s)	355, 420
TaaI	ACNGT	4 cut(s)	10, 175, 182, 487
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	240, 253, 696
TasI	AATT	7 cut(s)	236, 469, 584, 602, 665, 699, 772
Tru1I	TTAA	4 cut(s)	234, 308, 347, 375
Tru9I	TTAA	4 cut(s)	234, 308, 347, 375
TscAI	CASTG	1 cut(s)	178
TseI	GCWGC	1 cut(s)	117
TspRI	CASTG	1 cut(s)	178
XapI	RAATTY	4 cut(s)	236, 584, 665, 699
XcmI	CCANNNNNNNNNTGG	1 cut(s)	215
XspI	CTAG	1 cut(s)	633
Zsp2I	ATGCAT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.